Wall clock time and date at job start Wed Apr 1 2020 01:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 113.99832 * 2 1 4 4 H 1.08997 * 109.61780 * 29.77211 * 3 2 1 5 5 C 1.53184 * 109.54161 * 269.55410 * 3 2 1 6 6 C 1.53093 * 109.16214 * 183.15588 * 5 3 2 7 7 O 1.42903 * 109.41493 * 57.60462 * 6 5 3 8 8 C 1.42894 * 114.10088 * 298.84176 * 7 6 5 9 9 C 1.53092 * 109.41390 * 61.15746 * 8 7 6 10 10 H 1.08998 * 109.51984 * 62.36510 * 9 8 7 11 11 N 1.46503 * 109.52454 * 182.48251 * 9 8 7 12 12 C 1.34776 * 120.00412 * 275.00732 * 11 9 8 13 13 O 1.21585 * 119.99670 * 4.71619 * 12 11 9 14 14 N 1.34777 * 120.00302 * 184.72296 * 12 11 9 15 15 C 1.46968 * 120.59262 * 355.09199 * 14 12 11 16 16 C 1.53810 * 108.39989 * 124.75759 * 15 14 12 17 17 H 1.08995 * 109.74341 * 289.85078 * 16 15 14 18 18 C 1.52997 * 109.53402 * 169.30303 * 16 15 14 19 19 N 1.46967 * 108.57410 * 49.63780 * 16 15 14 20 20 C 1.36942 * 120.59205 * 124.67183 * 19 16 15 21 21 H 1.08000 * 119.99599 * 323.53874 * 20 19 16 22 22 C 1.38809 * 120.00139 * 143.54342 * 20 19 16 23 23 N 1.31621 * 120.00155 * 358.44534 * 22 20 19 24 24 Si 1.86801 * 120.00173 * 178.44987 * 22 20 19 25 25 H 1.48499 * 109.46845 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.46983 * 119.99446 * 24 22 20 27 27 H 1.48494 * 109.47237 * 239.99788 * 24 22 20 28 28 C 1.46960 * 118.81293 * 304.64311 * 19 16 15 29 29 H 1.09003 * 109.60872 * 174.97445 * 28 19 16 30 30 C 1.52998 * 109.61433 * 295.48274 * 28 19 16 31 31 C 1.46957 * 120.59640 * 175.37258 * 14 12 11 32 32 H 1.09003 * 109.47151 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47340 * 299.99867 * 1 2 3 34 34 H 1.09000 * 109.46909 * 60.00737 * 1 2 3 35 35 H 1.08996 * 109.52285 * 63.24995 * 5 3 2 36 36 H 1.08996 * 109.52199 * 303.05721 * 5 3 2 37 37 H 1.09000 * 109.47787 * 297.62250 * 6 5 3 38 38 H 1.08995 * 109.48857 * 177.59834 * 6 5 3 39 39 H 1.09001 * 109.48446 * 301.17533 * 8 7 6 40 40 H 1.09001 * 109.49208 * 181.14893 * 8 7 6 41 41 H 0.96998 * 119.99680 * 95.00173 * 11 9 8 42 42 H 1.09003 * 109.60843 * 244.54653 * 15 14 12 43 43 H 1.09008 * 109.60747 * 5.04922 * 15 14 12 44 44 H 1.09002 * 109.47422 * 296.48985 * 18 16 15 45 45 H 1.08995 * 109.47027 * 56.48761 * 18 16 15 46 46 H 1.08993 * 109.46874 * 176.49110 * 18 16 15 47 47 H 0.96994 * 120.00537 * 185.00491 * 23 22 20 48 48 H 1.08999 * 109.47160 * 179.13997 * 30 28 19 49 49 H 1.08993 * 109.47218 * 299.14846 * 30 28 19 50 50 H 1.09003 * 109.46569 * 59.14902 * 30 28 19 51 51 H 1.09006 * 109.61050 * 354.94547 * 31 14 12 52 52 H 1.09003 * 109.60862 * 115.45384 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 2.0022 0.5098 5 6 2.2289 1.7690 -1.4436 6 6 2.9233 3.1333 -1.4335 7 8 4.1577 3.0328 -0.7205 8 6 4.0114 2.6489 0.6481 9 6 3.3606 1.2651 0.7217 10 1 4.0091 0.5318 0.2425 11 7 3.1553 0.8946 2.1242 12 6 4.1542 0.3191 2.8224 13 8 5.2514 0.1854 2.3159 14 7 3.9368 -0.1084 4.0819 15 6 2.6494 0.1421 4.7451 16 6 2.0779 -1.2045 5.2202 17 1 1.7643 -1.7956 4.3598 18 6 0.8812 -0.9562 6.1406 19 7 3.1262 -1.9240 5.9573 20 6 2.9053 -2.3584 7.2371 21 1 2.3158 -1.7601 7.9162 22 6 3.4390 -3.5674 7.6617 23 7 4.1316 -4.3109 6.8251 24 14 3.1741 -4.1392 9.4201 25 1 2.3682 -3.1298 10.1528 26 1 2.4550 -5.4385 9.4151 27 1 4.4889 -4.3037 10.0905 28 6 4.4154 -2.1697 5.2962 29 1 5.1067 -2.6302 6.0021 30 6 4.2090 -3.0958 4.0960 31 6 4.9849 -0.8279 4.8190 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3633 0.5137 -0.8901 35 1 1.2667 1.8537 -1.9486 36 1 2.8540 1.0460 -1.9675 37 1 2.2799 3.8650 -0.9450 38 1 3.1199 3.4488 -2.4581 39 1 3.3822 3.3743 1.1639 40 1 4.9918 2.6153 1.1232 41 1 2.3005 1.0636 2.5503 42 1 2.8005 0.8007 5.6004 43 1 1.9591 0.6061 4.0405 44 1 1.2134 -0.4274 7.0340 45 1 0.1389 -0.3540 5.6169 46 1 0.4388 -1.9104 6.4267 47 1 4.4427 -5.1879 7.0990 48 1 5.1640 -3.2642 3.5984 49 1 3.8043 -4.0485 4.4376 50 1 3.5115 -2.6345 3.3969 51 1 5.8375 -1.0049 4.1633 52 1 5.2985 -0.2368 5.6795 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898077017.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:54 Heat of formation + Delta-G solvation = -78.484890 kcal Electronic energy + Delta-G solvation = -32778.820693 eV Core-core repulsion = 28587.029163 eV Total energy + Delta-G solvation = -4191.791530 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.52407 -39.41409 -37.61086 -37.36482 -34.65060 -33.95638 -32.61862 -32.24566 -31.30739 -29.63333 -27.86275 -27.09404 -26.25642 -25.35077 -24.43670 -23.76750 -23.27246 -21.04612 -20.73014 -20.05604 -18.66256 -18.02018 -17.09222 -16.67727 -16.45795 -16.04575 -15.76887 -15.36886 -15.11753 -14.87500 -14.78821 -14.59332 -14.04304 -13.79681 -13.71000 -13.56123 -13.31710 -13.09688 -12.97239 -12.75090 -12.21340 -12.13966 -11.91486 -11.69193 -11.53403 -11.47591 -11.21337 -11.20896 -10.93996 -10.81318 -10.70822 -10.59234 -10.54822 -10.14999 -10.11676 -9.99550 -9.90306 -9.73849 -9.70820 -9.37997 -8.88571 -8.43889 -8.00582 -6.47834 -5.81297 -3.34620 2.89943 3.34488 3.37039 3.42693 3.43765 3.59415 3.72713 4.18272 4.35647 4.45049 4.51476 4.61731 4.72337 4.91998 5.03268 5.07438 5.12071 5.16199 5.19619 5.36162 5.38039 5.44088 5.49728 5.62739 5.66024 5.68277 5.78663 5.82712 5.89656 6.07788 6.17908 6.28250 6.31885 6.42545 6.51276 6.59452 6.71673 6.85816 6.91154 6.92171 6.95443 7.00539 7.09066 7.14136 7.37167 7.71052 7.75304 7.86131 8.35681 8.50737 9.00520 9.22053 9.79420 10.40343 11.26061 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020213 B = 0.003047 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.882394 B = 9186.727161 C = 9701.518380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.370 6.370 3 C 0.081 3.919 4 H 0.065 0.935 5 C -0.175 4.175 6 C 0.060 3.940 7 O -0.375 6.375 8 C 0.055 3.945 9 C 0.139 3.861 10 H 0.103 0.897 11 N -0.740 5.740 12 C 0.707 3.293 13 O -0.598 6.598 14 N -0.610 5.610 15 C 0.101 3.899 16 C 0.156 3.844 17 H 0.031 0.969 18 C -0.134 4.134 19 N -0.581 5.581 20 C -0.253 4.253 21 H 0.067 0.933 22 C 0.012 3.988 23 N -0.898 5.898 24 Si 0.899 3.101 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.179 3.821 29 H 0.110 0.890 30 C -0.135 4.135 31 C 0.109 3.891 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.039 0.961 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.099 0.901 39 H 0.051 0.949 40 H 0.109 0.891 41 H 0.393 0.607 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.037 0.963 46 H 0.063 0.937 47 H 0.254 0.746 48 H 0.027 0.973 49 H 0.072 0.928 50 H 0.020 0.980 51 H 0.080 0.920 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.073 14.016 -13.297 20.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.289 6.289 3 C 0.022 3.978 4 H 0.083 0.917 5 C -0.213 4.213 6 C -0.017 4.017 7 O -0.292 6.292 8 C -0.023 4.023 9 C 0.032 3.968 10 H 0.121 0.879 11 N -0.399 5.399 12 C 0.409 3.591 13 O -0.477 6.477 14 N -0.346 5.346 15 C -0.025 4.025 16 C 0.048 3.952 17 H 0.049 0.951 18 C -0.192 4.192 19 N -0.304 5.304 20 C -0.383 4.383 21 H 0.085 0.915 22 C -0.187 4.187 23 N -0.541 5.541 24 Si 0.729 3.271 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.217 1.217 28 C 0.072 3.928 29 H 0.128 0.872 30 C -0.194 4.194 31 C -0.015 4.015 32 H 0.107 0.893 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.069 0.931 38 H 0.117 0.883 39 H 0.070 0.930 40 H 0.127 0.873 41 H 0.230 0.770 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.056 0.944 46 H 0.082 0.918 47 H 0.065 0.935 48 H 0.046 0.954 49 H 0.091 0.909 50 H 0.039 0.961 51 H 0.098 0.902 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.836 13.623 -13.669 20.474 hybrid contribution -1.273 -0.260 1.164 1.744 sum -8.109 13.363 -12.505 20.018 Atomic orbital electron populations 1.22824 0.81021 1.03157 0.99675 1.88060 1.19566 1.26357 1.94874 1.22441 0.94355 0.85689 0.95314 0.91721 1.22740 1.02364 0.98966 0.97246 1.22595 0.86220 0.95129 0.97770 1.88008 1.29403 1.88849 1.22936 1.23080 1.02953 0.93542 0.82720 1.21436 0.95632 0.98036 0.81706 0.87919 1.45057 1.15938 1.67381 1.11486 1.15824 0.83907 0.78129 0.81264 1.90870 1.23234 1.63569 1.70011 1.47181 1.16231 1.58765 1.12389 1.22372 0.84235 0.99758 0.96094 1.20850 0.89617 0.90417 0.94311 0.95091 1.21747 0.96427 1.01615 0.99393 1.44058 1.08519 1.65427 1.12424 1.19138 1.31269 1.00510 0.87339 0.91547 1.25319 0.99538 0.96112 0.97699 1.69882 1.39051 1.10678 1.34536 0.86282 0.77522 0.78486 0.84852 1.20341 1.21696 1.21687 1.20827 0.88782 0.89255 0.93915 0.87215 1.21945 0.98460 1.01666 0.97315 1.22434 0.89643 0.95013 0.94370 0.89323 0.93949 0.94240 0.90300 0.89560 0.93060 0.88286 0.93045 0.87315 0.77024 0.91789 0.92445 0.92398 0.94403 0.91824 0.93519 0.95427 0.90939 0.96052 0.90158 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.83 101.05 1.09 1.35 16 2 O -0.37 -4.43 10.28 -35.23 -0.36 -4.80 16 3 C 0.08 0.82 2.19 -26.55 -0.06 0.76 16 4 H 0.06 0.54 7.79 -51.93 -0.40 0.13 16 5 C -0.17 -1.46 5.76 -26.59 -0.15 -1.61 16 6 C 0.06 0.48 6.84 37.21 0.25 0.73 16 7 O -0.37 -4.33 10.76 -35.23 -0.38 -4.71 16 8 C 0.06 0.65 6.42 37.20 0.24 0.89 16 9 C 0.14 1.79 2.30 -67.79 -0.16 1.63 16 10 H 0.10 1.65 7.66 -51.93 -0.40 1.26 16 11 N -0.74 -10.50 4.92 -58.54 -0.29 -10.79 16 12 C 0.71 12.99 8.26 -86.92 -0.72 12.27 16 13 O -0.60 -12.93 15.48 5.29 0.08 -12.85 16 14 N -0.61 -11.32 2.60 -177.94 -0.46 -11.78 16 15 C 0.10 1.66 5.93 -3.37 -0.02 1.64 16 16 C 0.16 3.01 3.24 -67.26 -0.22 2.80 16 17 H 0.03 0.66 7.38 -51.93 -0.38 0.28 16 18 C -0.13 -2.28 8.07 37.16 0.30 -1.98 16 19 N -0.58 -13.51 2.67 -156.77 -0.42 -13.93 16 20 C -0.25 -6.39 8.48 -15.06 -0.13 -6.52 16 21 H 0.07 1.65 6.30 -52.49 -0.33 1.32 16 22 C 0.01 0.32 5.21 -17.43 -0.09 0.23 16 23 N -0.90 -24.49 9.70 55.49 0.54 -23.96 16 24 Si 0.90 20.78 29.56 -169.99 -5.02 15.75 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 C 0.18 4.15 2.32 -67.49 -0.16 3.99 16 29 H 0.11 2.87 6.11 -51.93 -0.32 2.56 16 30 C -0.13 -3.14 8.93 37.16 0.33 -2.81 16 31 C 0.11 2.25 5.95 -3.60 -0.02 2.23 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.04 0.32 8.09 -51.93 -0.42 -0.10 16 34 H 0.04 0.26 7.99 -51.93 -0.42 -0.15 16 35 H 0.08 0.51 7.99 -51.93 -0.42 0.09 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.11 1.49 8.14 -51.93 -0.42 1.06 16 41 H 0.39 4.80 6.05 -40.82 -0.25 4.56 16 42 H 0.06 1.04 8.12 -51.93 -0.42 0.62 16 43 H 0.06 0.76 5.55 -51.92 -0.29 0.47 16 44 H 0.06 1.01 7.07 -51.93 -0.37 0.64 16 45 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.06 1.18 7.90 -51.93 -0.41 0.77 16 47 H 0.25 6.82 8.32 -40.82 -0.34 6.48 16 48 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.07 1.86 7.05 -51.93 -0.37 1.50 16 50 H 0.02 0.48 7.00 -51.93 -0.36 0.12 16 51 H 0.08 1.71 6.99 -51.93 -0.36 1.34 16 52 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 394.67 15.07 5.95 5.95 Total: -1.00 -30.74 394.67 -8.72 -39.46 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -8.85 Total: 6.05 kcal Atomic # 6 Polarization: 15.10 SS G_CDS: 0.50 Total: 15.60 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -0.63 Total: -60.46 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.66 Total: -22.36 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.74 -8.72 -39.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898077017.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.026 kcal (2) G-P(sol) polarization free energy of solvation -30.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds