Wall clock time and date at job start Wed Apr 1 2020 01:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 113.99832 * 2 1 4 4 H 1.08997 * 109.61780 * 29.77211 * 3 2 1 5 5 C 1.53184 * 109.54161 * 269.55410 * 3 2 1 6 6 C 1.53093 * 109.16214 * 183.15588 * 5 3 2 7 7 O 1.42903 * 109.41493 * 57.60462 * 6 5 3 8 8 C 1.42894 * 114.10088 * 298.84176 * 7 6 5 9 9 C 1.53092 * 109.41390 * 61.15746 * 8 7 6 10 10 H 1.08998 * 109.51984 * 62.36510 * 9 8 7 11 11 N 1.46503 * 109.52454 * 182.48251 * 9 8 7 12 12 C 1.34776 * 120.00412 * 275.00732 * 11 9 8 13 13 O 1.21585 * 119.99670 * 4.71619 * 12 11 9 14 14 N 1.34777 * 120.00302 * 184.72296 * 12 11 9 15 15 C 1.46968 * 120.59262 * 355.09199 * 14 12 11 16 16 C 1.53810 * 108.39989 * 124.75759 * 15 14 12 17 17 H 1.08995 * 109.74341 * 289.85078 * 16 15 14 18 18 C 1.52997 * 109.53402 * 169.30303 * 16 15 14 19 19 N 1.46967 * 108.57410 * 49.63780 * 16 15 14 20 20 C 1.36942 * 120.59205 * 124.67183 * 19 16 15 21 21 H 1.08000 * 119.99599 * 323.53874 * 20 19 16 22 22 C 1.38809 * 120.00139 * 143.54342 * 20 19 16 23 23 N 1.31621 * 120.00155 * 358.44534 * 22 20 19 24 24 Si 1.86801 * 120.00173 * 178.44987 * 22 20 19 25 25 H 1.48499 * 109.46845 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.46983 * 119.99446 * 24 22 20 27 27 H 1.48494 * 109.47237 * 239.99788 * 24 22 20 28 28 C 1.46960 * 118.81293 * 304.64311 * 19 16 15 29 29 H 1.09003 * 109.60872 * 174.97445 * 28 19 16 30 30 C 1.52998 * 109.61433 * 295.48274 * 28 19 16 31 31 C 1.46957 * 120.59640 * 175.37258 * 14 12 11 32 32 H 1.09003 * 109.47151 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47340 * 299.99867 * 1 2 3 34 34 H 1.09000 * 109.46909 * 60.00737 * 1 2 3 35 35 H 1.08996 * 109.52285 * 63.24995 * 5 3 2 36 36 H 1.08996 * 109.52199 * 303.05721 * 5 3 2 37 37 H 1.09000 * 109.47787 * 297.62250 * 6 5 3 38 38 H 1.08995 * 109.48857 * 177.59834 * 6 5 3 39 39 H 1.09001 * 109.48446 * 301.17533 * 8 7 6 40 40 H 1.09001 * 109.49208 * 181.14893 * 8 7 6 41 41 H 0.96998 * 119.99680 * 95.00173 * 11 9 8 42 42 H 1.09003 * 109.60843 * 244.54653 * 15 14 12 43 43 H 1.09008 * 109.60747 * 5.04922 * 15 14 12 44 44 H 1.09002 * 109.47422 * 296.48985 * 18 16 15 45 45 H 1.08995 * 109.47027 * 56.48761 * 18 16 15 46 46 H 1.08993 * 109.46874 * 176.49110 * 18 16 15 47 47 H 0.96994 * 120.00537 * 185.00491 * 23 22 20 48 48 H 1.08999 * 109.47160 * 179.13997 * 30 28 19 49 49 H 1.08993 * 109.47218 * 299.14846 * 30 28 19 50 50 H 1.09003 * 109.46569 * 59.14902 * 30 28 19 51 51 H 1.09006 * 109.61050 * 354.94547 * 31 14 12 52 52 H 1.09003 * 109.60862 * 115.45384 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 2.0022 0.5098 5 6 2.2289 1.7690 -1.4436 6 6 2.9233 3.1333 -1.4335 7 8 4.1577 3.0328 -0.7205 8 6 4.0114 2.6489 0.6481 9 6 3.3606 1.2651 0.7217 10 1 4.0091 0.5318 0.2425 11 7 3.1553 0.8946 2.1242 12 6 4.1542 0.3191 2.8224 13 8 5.2514 0.1854 2.3159 14 7 3.9368 -0.1084 4.0819 15 6 2.6494 0.1421 4.7451 16 6 2.0779 -1.2045 5.2202 17 1 1.7643 -1.7956 4.3598 18 6 0.8812 -0.9562 6.1406 19 7 3.1262 -1.9240 5.9573 20 6 2.9053 -2.3584 7.2371 21 1 2.3158 -1.7601 7.9162 22 6 3.4390 -3.5674 7.6617 23 7 4.1316 -4.3109 6.8251 24 14 3.1741 -4.1392 9.4201 25 1 2.3682 -3.1298 10.1528 26 1 2.4550 -5.4385 9.4151 27 1 4.4889 -4.3037 10.0905 28 6 4.4154 -2.1697 5.2962 29 1 5.1067 -2.6302 6.0021 30 6 4.2090 -3.0958 4.0960 31 6 4.9849 -0.8279 4.8190 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3633 0.5137 -0.8901 35 1 1.2667 1.8537 -1.9486 36 1 2.8540 1.0460 -1.9675 37 1 2.2799 3.8650 -0.9450 38 1 3.1199 3.4488 -2.4581 39 1 3.3822 3.3743 1.1639 40 1 4.9918 2.6153 1.1232 41 1 2.3005 1.0636 2.5503 42 1 2.8005 0.8007 5.6004 43 1 1.9591 0.6061 4.0405 44 1 1.2134 -0.4274 7.0340 45 1 0.1389 -0.3540 5.6169 46 1 0.4388 -1.9104 6.4267 47 1 4.4427 -5.1879 7.0990 48 1 5.1640 -3.2642 3.5984 49 1 3.8043 -4.0485 4.4376 50 1 3.5115 -2.6345 3.3969 51 1 5.8375 -1.0049 4.1633 52 1 5.2985 -0.2368 5.6795 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898077017.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:53 Heat of formation + Delta-G solvation = -99.539976 kcal Electronic energy + Delta-G solvation = -32779.733710 eV Core-core repulsion = 28587.029163 eV Total energy + Delta-G solvation = -4192.704547 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.71357 -40.56319 -38.94975 -38.39893 -35.91009 -35.61344 -34.21344 -33.27346 -32.86758 -30.73526 -29.67438 -27.79419 -27.71951 -26.96083 -25.48389 -25.18291 -24.33479 -22.52916 -21.78558 -21.50188 -20.31255 -19.37337 -17.99148 -17.89089 -17.59731 -17.30774 -16.97316 -16.75280 -16.26213 -16.19784 -15.90613 -15.73720 -15.51706 -15.27842 -15.10422 -14.77018 -14.68940 -14.39767 -14.12340 -13.85671 -13.60379 -13.46337 -13.08409 -12.97042 -12.88266 -12.84638 -12.79232 -12.44740 -12.31701 -12.25393 -12.23043 -11.97644 -11.90506 -11.74379 -11.56644 -11.52780 -11.45328 -11.09224 -10.97520 -10.56934 -10.41565 -10.12318 -9.52590 -8.34876 -7.78514 -5.33146 1.49172 1.52571 1.58877 1.61094 2.17492 2.54901 2.61628 2.80155 3.05770 3.39022 3.54061 3.57193 3.77055 3.89758 3.92784 4.13428 4.17302 4.24049 4.29922 4.33494 4.42563 4.48068 4.51666 4.57656 4.63419 4.67638 4.71086 4.72713 4.75052 4.82920 4.84612 4.90157 4.90733 4.97174 4.99012 5.12766 5.14487 5.20535 5.37091 5.42822 5.44062 5.60290 5.76609 5.79969 5.83507 6.06213 6.17913 6.23018 6.55087 7.00433 7.25983 7.57763 7.91537 8.48140 9.27049 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020213 B = 0.003047 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.882394 B = 9186.727161 C = 9701.518380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.404 6.404 3 C 0.084 3.916 4 H 0.096 0.904 5 C -0.169 4.169 6 C 0.055 3.945 7 O -0.397 6.397 8 C 0.064 3.936 9 C 0.137 3.863 10 H 0.060 0.940 11 N -0.721 5.721 12 C 0.704 3.296 13 O -0.636 6.636 14 N -0.614 5.614 15 C 0.109 3.891 16 C 0.150 3.850 17 H 0.014 0.986 18 C -0.125 4.125 19 N -0.596 5.596 20 C -0.248 4.248 21 H 0.075 0.925 22 C -0.041 4.041 23 N -0.926 5.926 24 Si 0.958 3.042 25 H -0.264 1.264 26 H -0.298 1.298 27 H -0.298 1.298 28 C 0.183 3.817 29 H 0.076 0.924 30 C -0.115 4.115 31 C 0.123 3.877 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.106 0.894 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.117 0.883 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.407 0.593 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.055 0.945 45 H 0.082 0.918 46 H 0.041 0.959 47 H 0.246 0.754 48 H 0.027 0.973 49 H 0.043 0.957 50 H 0.019 0.981 51 H 0.068 0.932 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.011 17.031 -13.807 24.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C 0.026 3.974 4 H 0.114 0.886 5 C -0.207 4.207 6 C -0.021 4.021 7 O -0.315 6.315 8 C -0.014 4.014 9 C 0.031 3.969 10 H 0.079 0.921 11 N -0.380 5.380 12 C 0.406 3.594 13 O -0.518 6.518 14 N -0.349 5.349 15 C -0.016 4.016 16 C 0.043 3.957 17 H 0.031 0.969 18 C -0.183 4.183 19 N -0.319 5.319 20 C -0.378 4.378 21 H 0.092 0.908 22 C -0.237 4.237 23 N -0.572 5.572 24 Si 0.787 3.213 25 H -0.189 1.189 26 H -0.225 1.225 27 H -0.226 1.226 28 C 0.075 3.925 29 H 0.094 0.906 30 C -0.174 4.174 31 C -0.002 4.002 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.125 0.875 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.134 0.866 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.246 0.754 42 H 0.093 0.907 43 H 0.116 0.884 44 H 0.074 0.926 45 H 0.100 0.900 46 H 0.060 0.940 47 H 0.056 0.944 48 H 0.046 0.954 49 H 0.062 0.938 50 H 0.038 0.962 51 H 0.086 0.914 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.846 16.689 -14.194 24.019 hybrid contribution -0.401 -1.181 1.220 1.745 sum -10.247 15.507 -12.974 22.667 Atomic orbital electron populations 1.22999 0.79262 1.03556 1.01412 1.88026 1.21624 1.27553 1.95138 1.22486 0.92880 0.85817 0.96204 0.88647 1.22712 1.03408 0.98566 0.96055 1.22874 0.85250 0.95401 0.98615 1.87984 1.31856 1.88788 1.22835 1.22869 1.01820 0.93360 0.83367 1.21526 0.97219 0.97591 0.80595 0.92127 1.44876 1.15300 1.66048 1.11778 1.15982 0.84162 0.78195 0.81097 1.90847 1.25159 1.65019 1.70735 1.47139 1.16547 1.58621 1.12596 1.22398 0.83649 0.98152 0.97372 1.21062 0.89696 0.91075 0.93880 0.96854 1.21663 0.96142 1.01223 0.99225 1.44255 1.09480 1.65821 1.12341 1.19432 1.29872 1.00131 0.88414 0.90769 1.25968 1.00225 0.96743 1.00766 1.70060 1.40534 1.10605 1.35993 0.85349 0.76821 0.77784 0.81342 1.18872 1.22531 1.22589 1.20587 0.88745 0.90275 0.92850 0.90586 1.21728 0.98071 1.00294 0.97341 1.22041 0.89805 0.93958 0.94422 0.89766 0.92494 0.92131 0.87531 0.91726 0.90495 0.86554 0.90236 0.90170 0.75447 0.90748 0.88368 0.92627 0.89962 0.93984 0.94440 0.95413 0.93752 0.96162 0.91355 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.83 113.37 1.23 1.55 16 2 O -0.40 -8.83 10.28 -148.98 -1.53 -10.36 16 3 C 0.08 1.47 2.19 30.71 0.07 1.54 16 4 H 0.10 1.09 7.79 -2.39 -0.02 1.07 16 5 C -0.17 -2.36 5.76 30.69 0.18 -2.18 16 6 C 0.05 0.70 6.84 72.01 0.49 1.19 16 7 O -0.40 -8.57 10.76 -148.98 -1.60 -10.17 16 8 C 0.06 1.42 6.42 72.01 0.46 1.88 16 9 C 0.14 3.39 2.30 45.08 0.10 3.49 16 10 H 0.06 2.03 7.66 -2.39 -0.02 2.01 16 11 N -0.72 -19.17 4.92 -457.39 -2.25 -21.42 16 12 C 0.70 25.51 8.26 179.05 1.48 26.99 16 13 O -0.64 -28.17 15.48 -3.98 -0.06 -28.23 16 14 N -0.61 -22.20 2.60 -835.14 -2.17 -24.37 16 15 C 0.11 3.25 5.93 86.56 0.51 3.76 16 16 C 0.15 5.54 3.24 45.17 0.15 5.69 16 17 H 0.01 0.56 7.38 -2.39 -0.02 0.54 16 18 C -0.12 -3.89 8.07 71.98 0.58 -3.30 16 19 N -0.60 -27.70 2.67 -649.90 -1.74 -29.44 16 20 C -0.25 -12.52 8.48 84.03 0.71 -11.81 16 21 H 0.07 3.59 6.30 -2.91 -0.02 3.57 16 22 C -0.04 -2.19 5.21 84.86 0.44 -1.75 16 23 N -0.93 -52.42 9.70 21.65 0.21 -52.21 16 24 Si 0.96 43.34 29.56 68.60 2.03 45.36 16 25 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 26 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 27 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 28 C 0.18 8.71 2.32 45.03 0.10 8.82 16 29 H 0.08 4.17 6.11 -2.39 -0.01 4.16 16 30 C -0.12 -5.59 8.93 71.98 0.64 -4.94 16 31 C 0.12 5.13 5.95 86.42 0.51 5.65 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 0.61 8.09 -2.39 -0.02 0.59 16 34 H 0.06 0.57 7.99 -2.39 -0.02 0.55 16 35 H 0.11 0.92 7.99 -2.39 -0.02 0.90 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.41 8.43 6.05 -92.71 -0.56 7.87 16 42 H 0.07 2.15 8.12 -2.39 -0.02 2.13 16 43 H 0.10 2.13 5.55 -2.38 -0.01 2.12 16 44 H 0.05 1.76 7.07 -2.39 -0.02 1.74 16 45 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.04 1.48 7.90 -2.39 -0.02 1.46 16 47 H 0.25 13.78 8.32 -92.71 -0.77 13.00 16 48 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.04 2.37 7.05 -2.39 -0.02 2.36 16 50 H 0.02 0.93 7.00 -2.39 -0.02 0.92 16 51 H 0.07 3.01 6.99 -2.38 -0.02 2.99 16 52 H 0.06 2.38 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -70.88 394.67 0.90 -69.99 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.35 Total: 24.29 kcal Atomic # 6 Polarization: 28.91 SS G_CDS: 7.67 Total: 36.57 kcal Atomic # 7 Polarization: -121.49 SS G_CDS: -5.95 Total: -127.44 kcal Atomic # 8 Polarization: -45.57 SS G_CDS: -3.20 Total: -48.77 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -70.88 0.90 -69.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898077017.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.552 kcal (2) G-P(sol) polarization free energy of solvation -70.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds