Wall clock time and date at job start Wed Apr 1 2020 01:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42897 * 113.99834 * 2 1 4 4 H 1.09009 * 109.54597 * 29.82106 * 3 2 1 5 5 C 1.53176 * 109.54236 * 269.55486 * 3 2 1 6 6 C 1.53097 * 109.16504 * 183.15174 * 5 3 2 7 7 O 1.42897 * 109.41094 * 57.60770 * 6 5 3 8 8 C 1.42912 * 114.15925 * 298.87563 * 7 6 5 9 9 C 1.53089 * 109.40820 * 61.05982 * 8 7 6 10 10 H 1.08997 * 109.52521 * 62.43326 * 9 8 7 11 11 N 1.46506 * 109.52179 * 182.55833 * 9 8 7 12 12 C 1.34778 * 119.99568 * 274.87857 * 11 9 8 13 13 O 1.21591 * 120.00238 * 4.94639 * 12 11 9 14 14 N 1.34778 * 119.99789 * 184.95420 * 12 11 9 15 15 C 1.46961 * 120.59299 * 354.88943 * 14 12 11 16 16 C 1.53374 * 108.63635 * 235.20443 * 15 14 12 17 17 H 1.08999 * 109.60915 * 70.32197 * 16 15 14 18 18 C 1.52998 * 109.60864 * 190.83462 * 16 15 14 19 19 N 1.46960 * 108.63281 * 310.57726 * 16 15 14 20 20 C 1.36934 * 120.59755 * 235.20011 * 19 16 15 21 21 H 1.07999 * 120.00692 * 126.17837 * 20 19 16 22 22 C 1.38812 * 119.99995 * 306.19178 * 20 19 16 23 23 N 1.31619 * 120.00519 * 159.69316 * 22 20 19 24 24 Si 1.86805 * 119.99853 * 339.68601 * 22 20 19 25 25 H 1.48496 * 109.47123 * 275.06902 * 24 22 20 26 26 H 1.48506 * 109.46680 * 35.06733 * 24 22 20 27 27 H 1.48499 * 109.47095 * 155.06413 * 24 22 20 28 28 C 1.46967 * 118.81406 * 55.47884 * 19 16 15 29 29 H 1.09002 * 109.60970 * 64.26087 * 28 19 16 30 30 C 1.52995 * 109.61248 * 184.77885 * 28 19 16 31 31 C 1.46960 * 120.59357 * 174.86670 * 14 12 11 32 32 H 1.09006 * 109.47047 * 300.00039 * 1 2 3 33 33 H 1.08994 * 109.46969 * 60.00527 * 1 2 3 34 34 H 1.09003 * 109.46849 * 180.02562 * 1 2 3 35 35 H 1.08995 * 109.52805 * 303.06043 * 5 3 2 36 36 H 1.09007 * 109.52281 * 63.18760 * 5 3 2 37 37 H 1.08996 * 109.47897 * 177.59096 * 6 5 3 38 38 H 1.09006 * 109.47872 * 297.61575 * 6 5 3 39 39 H 1.09003 * 109.42294 * 301.11402 * 8 7 6 40 40 H 1.08994 * 109.53977 * 181.07613 * 8 7 6 41 41 H 0.96995 * 119.99984 * 94.87161 * 11 9 8 42 42 H 1.09010 * 109.61041 * 115.45921 * 15 14 12 43 43 H 1.08998 * 109.75414 * 355.03751 * 15 14 12 44 44 H 1.09006 * 109.46592 * 179.14760 * 18 16 15 45 45 H 1.09001 * 109.47208 * 299.13897 * 18 16 15 46 46 H 1.09000 * 109.47509 * 59.14857 * 18 16 15 47 47 H 0.96993 * 120.00314 * 180.02562 * 23 22 20 48 48 H 1.08994 * 109.47849 * 64.05551 * 30 28 19 49 49 H 1.09002 * 109.47737 * 184.05994 * 30 28 19 50 50 H 1.09006 * 109.47186 * 304.05659 * 30 28 19 51 51 H 1.08999 * 109.61148 * 244.54055 * 31 14 12 52 52 H 1.09000 * 109.61283 * 4.87906 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3444 2.0011 0.5109 5 6 2.2289 1.7690 -1.4435 6 6 2.9233 3.1334 -1.4335 7 8 4.1576 3.0329 -0.7206 8 6 4.0128 2.6483 0.6482 9 6 3.3607 1.2652 0.7217 10 1 4.0083 0.5312 0.2422 11 7 3.1554 0.8947 2.1242 12 6 4.1531 0.3157 2.8212 13 8 5.2506 0.1826 2.3152 14 7 3.9341 -0.1159 4.0791 15 6 2.6480 0.1375 4.7436 16 6 2.9155 0.8596 6.0700 17 1 3.2540 1.8764 5.8712 18 6 1.6327 0.8952 6.9030 19 7 3.9584 0.1267 6.8015 20 6 3.7361 -0.3117 8.0796 21 1 3.8881 -1.3517 8.3279 22 6 3.3149 0.5805 9.0560 23 7 2.7251 0.1344 10.1449 24 14 3.5854 2.4143 8.8248 25 1 4.9509 2.7750 9.2837 26 1 3.4390 2.7589 7.3877 27 1 2.5813 3.1668 9.6190 28 6 5.2466 -0.1218 6.1391 29 1 5.7472 0.8268 5.9451 30 6 6.1251 -0.9960 7.0361 31 6 4.9770 -0.8487 4.8106 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 2.8539 1.0460 -1.9676 36 1 1.2667 1.8527 -1.9489 37 1 3.1199 3.4486 -2.4582 38 1 2.2797 3.8652 -0.9451 39 1 3.3845 3.3743 1.1642 40 1 4.9934 2.6135 1.1228 41 1 2.3014 1.0662 2.5511 42 1 2.1436 -0.8092 4.9376 43 1 2.0212 0.7621 4.1070 44 1 1.8292 1.3954 7.8514 45 1 0.8609 1.4392 6.3585 46 1 1.2942 -0.1234 7.0928 47 1 2.4306 0.7579 10.8270 48 1 5.6576 -1.9725 7.1622 49 1 7.1054 -1.1193 6.5758 50 1 6.2384 -0.5191 8.0098 51 1 4.6385 -1.8656 5.0094 52 1 5.8900 -0.8768 4.2159 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898077019.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:58 Heat of formation + Delta-G solvation = -70.572723 kcal Electronic energy + Delta-G solvation = -32630.281953 eV Core-core repulsion = 28438.833521 eV Total energy + Delta-G solvation = -4191.448433 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.62488 -39.53050 -37.68965 -37.63455 -34.78883 -34.23026 -33.11889 -32.29776 -31.60074 -29.90521 -28.00852 -27.18835 -26.31757 -25.85321 -24.50311 -23.93381 -23.00766 -21.01804 -20.62271 -20.10105 -19.31074 -18.13026 -17.19566 -16.86561 -16.52461 -16.28735 -15.93919 -15.54092 -15.18667 -15.01185 -14.88996 -14.87743 -14.57653 -14.04792 -13.84347 -13.63582 -13.39555 -13.18953 -12.87435 -12.69586 -12.36322 -12.28303 -12.16677 -12.15117 -11.81861 -11.58330 -11.45484 -11.30494 -11.27485 -10.88712 -10.79971 -10.56464 -10.42231 -10.21268 -10.17655 -10.09196 -10.05501 -9.97812 -9.75720 -9.43979 -9.01127 -8.53553 -8.11697 -6.49258 -6.07790 -3.66441 2.76224 3.27139 3.30617 3.40964 3.44018 3.47413 3.63701 4.04971 4.27963 4.43734 4.44682 4.55402 4.65458 4.80571 4.87597 4.95654 5.00028 5.05275 5.11855 5.18687 5.29819 5.38918 5.39470 5.48213 5.54704 5.58753 5.71089 5.74542 5.82775 5.88314 5.95286 6.03841 6.21493 6.27682 6.29723 6.38486 6.44757 6.47563 6.59802 6.76810 6.81219 6.87991 6.91104 6.96287 7.16060 7.23079 7.28477 8.03675 8.18102 8.48475 8.83307 8.96094 9.62152 10.17108 11.04747 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015985 B = 0.003231 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.237044 B = 8663.193046 C = 8928.428715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.373 6.373 3 C 0.080 3.920 4 H 0.066 0.934 5 C -0.174 4.174 6 C 0.059 3.941 7 O -0.374 6.374 8 C 0.054 3.946 9 C 0.139 3.861 10 H 0.103 0.897 11 N -0.739 5.739 12 C 0.708 3.292 13 O -0.597 6.597 14 N -0.616 5.616 15 C 0.103 3.897 16 C 0.151 3.849 17 H 0.038 0.962 18 C -0.135 4.135 19 N -0.596 5.596 20 C -0.273 4.273 21 H 0.073 0.927 22 C 0.058 3.942 23 N -0.894 5.894 24 Si 0.866 3.134 25 H -0.291 1.291 26 H -0.258 1.258 27 H -0.298 1.298 28 C 0.152 3.848 29 H 0.031 0.969 30 C -0.129 4.129 31 C 0.119 3.881 32 H 0.043 0.957 33 H 0.040 0.960 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.110 0.890 41 H 0.395 0.605 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.034 0.966 46 H 0.069 0.931 47 H 0.264 0.736 48 H 0.055 0.945 49 H 0.040 0.960 50 H 0.070 0.930 51 H 0.063 0.937 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.630 4.150 -20.486 21.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.291 6.291 3 C 0.022 3.978 4 H 0.084 0.916 5 C -0.212 4.212 6 C -0.018 4.018 7 O -0.292 6.292 8 C -0.024 4.024 9 C 0.032 3.968 10 H 0.121 0.879 11 N -0.397 5.397 12 C 0.410 3.590 13 O -0.476 6.476 14 N -0.351 5.351 15 C -0.023 4.023 16 C 0.044 3.956 17 H 0.055 0.945 18 C -0.193 4.193 19 N -0.322 5.322 20 C -0.402 4.402 21 H 0.090 0.910 22 C -0.144 4.144 23 N -0.533 5.533 24 Si 0.695 3.305 25 H -0.219 1.219 26 H -0.183 1.183 27 H -0.225 1.225 28 C 0.046 3.954 29 H 0.049 0.951 30 C -0.187 4.187 31 C -0.006 4.006 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.118 0.882 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.128 0.872 41 H 0.232 0.768 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.053 0.947 46 H 0.088 0.912 47 H 0.074 0.926 48 H 0.074 0.926 49 H 0.059 0.941 50 H 0.089 0.911 51 H 0.081 0.919 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.620 3.908 -20.752 21.617 hybrid contribution -1.051 1.348 0.414 1.759 sum -5.671 5.257 -20.338 21.758 Atomic orbital electron populations 1.22832 0.80962 1.03084 0.99867 1.88028 1.19625 1.26537 1.94922 1.22459 0.94341 0.85626 0.95422 0.91580 1.22733 1.02403 0.99007 0.97101 1.22603 0.86244 0.95105 0.97824 1.88007 1.29404 1.88832 1.22914 1.23092 1.03059 0.93494 0.82765 1.21460 0.95651 0.98191 0.81470 0.87886 1.45068 1.16165 1.66916 1.11592 1.15808 0.83938 0.78138 0.81119 1.90877 1.22993 1.63673 1.70091 1.47175 1.16788 1.58814 1.12338 1.22299 0.84087 1.00703 0.95162 1.21164 0.90628 0.93945 0.89834 0.94490 1.21923 0.94767 1.02793 0.99780 1.44374 1.08164 1.66579 1.13051 1.18420 1.44976 0.93712 0.83077 0.90997 1.25881 0.96202 0.97722 0.94644 1.69871 1.38496 1.35075 1.09906 0.87368 0.77300 0.87149 0.78726 1.21871 1.18340 1.22515 1.21096 0.87947 0.95786 0.90608 0.95122 1.21672 0.96679 1.00112 1.00254 1.22234 0.90340 0.94556 0.93437 0.93868 0.94133 0.89374 0.89586 0.90252 0.88223 0.92978 0.92893 0.87232 0.76836 0.91175 0.92234 0.91426 0.94657 0.91219 0.92626 0.92554 0.94074 0.91147 0.91869 0.89788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.83 101.05 1.09 1.31 16 2 O -0.37 -4.00 10.28 -35.23 -0.36 -4.37 16 3 C 0.08 0.76 2.20 -26.55 -0.06 0.70 16 4 H 0.07 0.52 7.79 -51.92 -0.40 0.12 16 5 C -0.17 -1.35 5.76 -26.59 -0.15 -1.51 16 6 C 0.06 0.46 6.85 37.21 0.25 0.71 16 7 O -0.37 -4.26 10.76 -35.23 -0.38 -4.64 16 8 C 0.05 0.63 6.43 37.20 0.24 0.87 16 9 C 0.14 1.70 2.29 -67.79 -0.16 1.54 16 10 H 0.10 1.53 7.66 -51.93 -0.40 1.13 16 11 N -0.74 -10.00 4.92 -58.54 -0.29 -10.29 16 12 C 0.71 12.29 8.26 -86.92 -0.72 11.57 16 13 O -0.60 -12.12 15.47 5.29 0.08 -12.04 16 14 N -0.62 -10.79 2.95 -177.94 -0.52 -11.31 16 15 C 0.10 1.68 5.87 -3.60 -0.02 1.66 16 16 C 0.15 2.99 2.42 -67.49 -0.16 2.83 16 17 H 0.04 0.78 6.48 -51.93 -0.34 0.45 16 18 C -0.14 -2.67 7.66 37.16 0.28 -2.39 16 19 N -0.60 -13.21 2.19 -156.77 -0.34 -13.55 16 20 C -0.27 -6.98 7.19 -15.06 -0.11 -7.09 16 21 H 0.07 2.03 7.47 -52.49 -0.39 1.64 16 22 C 0.06 1.54 3.92 -17.43 -0.07 1.47 16 23 N -0.89 -25.46 13.97 55.49 0.78 -24.68 16 24 Si 0.87 21.04 25.21 -169.99 -4.28 16.75 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.26 -5.97 4.69 56.52 0.27 -5.70 16 27 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 28 C 0.15 3.04 3.67 -67.25 -0.25 2.79 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 30 C -0.13 -2.41 8.20 37.16 0.30 -2.11 16 31 C 0.12 2.16 5.93 -3.37 -0.02 2.14 16 32 H 0.04 0.29 8.09 -51.93 -0.42 -0.13 16 33 H 0.04 0.24 7.99 -51.93 -0.42 -0.18 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.47 7.99 -51.93 -0.42 0.05 16 37 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.40 4.65 6.08 -40.82 -0.25 4.40 16 42 H 0.07 1.17 8.12 -51.92 -0.42 0.75 16 43 H 0.06 0.79 5.62 -51.93 -0.29 0.50 16 44 H 0.07 1.53 2.94 -51.93 -0.15 1.38 16 45 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 1.45 7.91 -51.93 -0.41 1.04 16 47 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 48 H 0.06 1.06 7.71 -51.93 -0.40 0.66 16 49 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.07 1.45 7.52 -51.93 -0.39 1.06 16 51 H 0.06 1.14 8.11 -51.93 -0.42 0.72 16 52 H 0.08 1.53 6.99 -51.93 -0.36 1.17 16 LS Contribution 388.17 15.07 5.85 5.85 Total: -1.00 -31.35 388.17 -7.97 -39.32 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -8.96 Total: 4.47 kcal Atomic # 6 Polarization: 14.02 SS G_CDS: 0.46 Total: 14.49 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: -0.38 Total: -59.84 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.66 Total: -21.04 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.28 Total: 16.75 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.35 -7.97 -39.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898077019.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.256 kcal (2) G-P(sol) polarization free energy of solvation -31.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds