Wall clock time and date at job start Wed Apr 1 2020 01:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42897 * 113.99834 * 2 1 4 4 H 1.09009 * 109.54597 * 29.82106 * 3 2 1 5 5 C 1.53176 * 109.54236 * 269.55486 * 3 2 1 6 6 C 1.53097 * 109.16504 * 183.15174 * 5 3 2 7 7 O 1.42897 * 109.41094 * 57.60770 * 6 5 3 8 8 C 1.42912 * 114.15925 * 298.87563 * 7 6 5 9 9 C 1.53089 * 109.40820 * 61.05982 * 8 7 6 10 10 H 1.08997 * 109.52521 * 62.43326 * 9 8 7 11 11 N 1.46506 * 109.52179 * 182.55833 * 9 8 7 12 12 C 1.34778 * 119.99568 * 274.87857 * 11 9 8 13 13 O 1.21591 * 120.00238 * 4.94639 * 12 11 9 14 14 N 1.34778 * 119.99789 * 184.95420 * 12 11 9 15 15 C 1.46961 * 120.59299 * 354.88943 * 14 12 11 16 16 C 1.53374 * 108.63635 * 235.20443 * 15 14 12 17 17 H 1.08999 * 109.60915 * 70.32197 * 16 15 14 18 18 C 1.52998 * 109.60864 * 190.83462 * 16 15 14 19 19 N 1.46960 * 108.63281 * 310.57726 * 16 15 14 20 20 C 1.36934 * 120.59755 * 235.20011 * 19 16 15 21 21 H 1.07999 * 120.00692 * 126.17837 * 20 19 16 22 22 C 1.38812 * 119.99995 * 306.19178 * 20 19 16 23 23 N 1.31619 * 120.00519 * 159.69316 * 22 20 19 24 24 Si 1.86805 * 119.99853 * 339.68601 * 22 20 19 25 25 H 1.48496 * 109.47123 * 275.06902 * 24 22 20 26 26 H 1.48506 * 109.46680 * 35.06733 * 24 22 20 27 27 H 1.48499 * 109.47095 * 155.06413 * 24 22 20 28 28 C 1.46967 * 118.81406 * 55.47884 * 19 16 15 29 29 H 1.09002 * 109.60970 * 64.26087 * 28 19 16 30 30 C 1.52995 * 109.61248 * 184.77885 * 28 19 16 31 31 C 1.46960 * 120.59357 * 174.86670 * 14 12 11 32 32 H 1.09006 * 109.47047 * 300.00039 * 1 2 3 33 33 H 1.08994 * 109.46969 * 60.00527 * 1 2 3 34 34 H 1.09003 * 109.46849 * 180.02562 * 1 2 3 35 35 H 1.08995 * 109.52805 * 303.06043 * 5 3 2 36 36 H 1.09007 * 109.52281 * 63.18760 * 5 3 2 37 37 H 1.08996 * 109.47897 * 177.59096 * 6 5 3 38 38 H 1.09006 * 109.47872 * 297.61575 * 6 5 3 39 39 H 1.09003 * 109.42294 * 301.11402 * 8 7 6 40 40 H 1.08994 * 109.53977 * 181.07613 * 8 7 6 41 41 H 0.96995 * 119.99984 * 94.87161 * 11 9 8 42 42 H 1.09010 * 109.61041 * 115.45921 * 15 14 12 43 43 H 1.08998 * 109.75414 * 355.03751 * 15 14 12 44 44 H 1.09006 * 109.46592 * 179.14760 * 18 16 15 45 45 H 1.09001 * 109.47208 * 299.13897 * 18 16 15 46 46 H 1.09000 * 109.47509 * 59.14857 * 18 16 15 47 47 H 0.96993 * 120.00314 * 180.02562 * 23 22 20 48 48 H 1.08994 * 109.47849 * 64.05551 * 30 28 19 49 49 H 1.09002 * 109.47737 * 184.05994 * 30 28 19 50 50 H 1.09006 * 109.47186 * 304.05659 * 30 28 19 51 51 H 1.08999 * 109.61148 * 244.54055 * 31 14 12 52 52 H 1.09000 * 109.61283 * 4.87906 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3444 2.0011 0.5109 5 6 2.2289 1.7690 -1.4435 6 6 2.9233 3.1334 -1.4335 7 8 4.1576 3.0329 -0.7206 8 6 4.0128 2.6483 0.6482 9 6 3.3607 1.2652 0.7217 10 1 4.0083 0.5312 0.2422 11 7 3.1554 0.8947 2.1242 12 6 4.1531 0.3157 2.8212 13 8 5.2506 0.1826 2.3152 14 7 3.9341 -0.1159 4.0791 15 6 2.6480 0.1375 4.7436 16 6 2.9155 0.8596 6.0700 17 1 3.2540 1.8764 5.8712 18 6 1.6327 0.8952 6.9030 19 7 3.9584 0.1267 6.8015 20 6 3.7361 -0.3117 8.0796 21 1 3.8881 -1.3517 8.3279 22 6 3.3149 0.5805 9.0560 23 7 2.7251 0.1344 10.1449 24 14 3.5854 2.4143 8.8248 25 1 4.9509 2.7750 9.2837 26 1 3.4390 2.7589 7.3877 27 1 2.5813 3.1668 9.6190 28 6 5.2466 -0.1218 6.1391 29 1 5.7472 0.8268 5.9451 30 6 6.1251 -0.9960 7.0361 31 6 4.9770 -0.8487 4.8106 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 2.8539 1.0460 -1.9676 36 1 1.2667 1.8527 -1.9489 37 1 3.1199 3.4486 -2.4582 38 1 2.2797 3.8652 -0.9451 39 1 3.3845 3.3743 1.1642 40 1 4.9934 2.6135 1.1228 41 1 2.3014 1.0662 2.5511 42 1 2.1436 -0.8092 4.9376 43 1 2.0212 0.7621 4.1070 44 1 1.8292 1.3954 7.8514 45 1 0.8609 1.4392 6.3585 46 1 1.2942 -0.1234 7.0928 47 1 2.4306 0.7579 10.8270 48 1 5.6576 -1.9725 7.1622 49 1 7.1054 -1.1193 6.5758 50 1 6.2384 -0.5191 8.0098 51 1 4.6385 -1.8656 5.0094 52 1 5.8900 -0.8768 4.2159 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898077019.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:57 Heat of formation + Delta-G solvation = -93.438835 kcal Electronic energy + Delta-G solvation = -32631.273502 eV Core-core repulsion = 28438.833521 eV Total energy + Delta-G solvation = -4192.439982 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.75328 -40.60486 -39.15700 -38.41178 -35.96136 -35.84319 -34.63522 -33.51378 -33.00670 -30.92827 -29.68081 -27.81682 -27.76211 -27.40370 -25.38778 -25.18804 -24.14659 -22.27029 -21.78422 -21.63015 -20.80101 -19.41352 -18.36078 -17.90383 -17.75456 -17.33339 -17.08023 -16.75583 -16.60109 -16.31885 -16.09912 -15.97757 -15.47528 -15.34367 -15.31753 -14.79403 -14.58590 -14.28964 -14.17884 -14.10320 -13.90524 -13.84199 -13.44665 -13.08091 -12.89956 -12.85046 -12.83412 -12.53157 -12.33029 -12.26509 -12.10951 -11.95090 -11.92052 -11.79191 -11.71517 -11.57327 -11.42626 -11.13227 -11.00075 -10.58760 -10.52739 -10.15912 -9.60412 -8.32403 -8.14097 -5.71109 1.34560 1.44819 1.50574 1.54138 2.08455 2.43624 2.58179 2.73174 3.01478 3.08269 3.28725 3.53015 3.75181 3.86475 3.91152 4.01554 4.10875 4.14295 4.21601 4.31584 4.38637 4.39751 4.41645 4.49915 4.51755 4.56583 4.64434 4.66560 4.70163 4.74210 4.80608 4.81522 4.88773 4.89767 4.93429 4.95398 5.09108 5.12220 5.26211 5.33220 5.38070 5.39375 5.59867 5.63302 5.93829 6.04665 6.15238 6.19659 6.39479 6.91017 7.10699 7.50554 7.63348 8.21357 9.01390 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015985 B = 0.003231 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.237044 B = 8663.193046 C = 8928.428715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.401 6.401 3 C 0.084 3.916 4 H 0.091 0.909 5 C -0.168 4.168 6 C 0.053 3.947 7 O -0.396 6.396 8 C 0.061 3.939 9 C 0.139 3.861 10 H 0.069 0.931 11 N -0.722 5.722 12 C 0.706 3.294 13 O -0.630 6.630 14 N -0.621 5.621 15 C 0.113 3.887 16 C 0.145 3.855 17 H 0.034 0.966 18 C -0.131 4.131 19 N -0.607 5.607 20 C -0.251 4.251 21 H 0.037 0.963 22 C 0.021 3.979 23 N -0.938 5.938 24 Si 0.915 3.085 25 H -0.308 1.308 26 H -0.237 1.237 27 H -0.300 1.300 28 C 0.149 3.851 29 H 0.023 0.977 30 C -0.122 4.122 31 C 0.129 3.871 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.117 0.883 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.407 0.593 42 H 0.071 0.929 43 H 0.099 0.901 44 H 0.039 0.961 45 H 0.079 0.921 46 H 0.052 0.948 47 H 0.262 0.738 48 H 0.049 0.951 49 H 0.071 0.929 50 H 0.044 0.956 51 H 0.064 0.936 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.501 5.759 -23.199 25.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.320 6.320 3 C 0.026 3.974 4 H 0.109 0.891 5 C -0.206 4.206 6 C -0.023 4.023 7 O -0.314 6.314 8 C -0.017 4.017 9 C 0.033 3.967 10 H 0.087 0.913 11 N -0.381 5.381 12 C 0.408 3.592 13 O -0.512 6.512 14 N -0.355 5.355 15 C -0.011 4.011 16 C 0.039 3.961 17 H 0.051 0.949 18 C -0.189 4.189 19 N -0.334 5.334 20 C -0.381 4.381 21 H 0.055 0.945 22 C -0.178 4.178 23 N -0.580 5.580 24 Si 0.744 3.256 25 H -0.236 1.236 26 H -0.161 1.161 27 H -0.228 1.228 28 C 0.043 3.957 29 H 0.041 0.959 30 C -0.180 4.180 31 C 0.004 3.996 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.124 0.876 37 H 0.135 0.865 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.245 0.755 42 H 0.089 0.911 43 H 0.117 0.883 44 H 0.057 0.943 45 H 0.097 0.903 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.068 0.932 49 H 0.090 0.910 50 H 0.064 0.936 51 H 0.083 0.917 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.531 5.536 -23.521 25.030 hybrid contribution -0.461 0.783 1.163 1.476 sum -6.992 6.319 -22.357 24.262 Atomic orbital electron populations 1.23013 0.79249 1.03752 1.01292 1.87997 1.21570 1.27292 1.95141 1.22468 0.92867 0.85888 0.96188 0.89092 1.22698 1.03434 0.98453 0.96027 1.22882 0.85250 0.95572 0.98584 1.87981 1.31827 1.88827 1.22726 1.22884 1.01798 0.93624 0.83398 1.21520 0.97252 0.97493 0.80474 0.91292 1.44936 1.15617 1.65630 1.11934 1.15949 0.84148 0.78133 0.81003 1.90858 1.24668 1.64949 1.70741 1.47191 1.16952 1.58833 1.12573 1.22194 0.83995 1.01048 0.93904 1.21279 0.89836 0.93702 0.91240 0.94891 1.21861 0.95971 1.02058 0.99014 1.44531 1.09801 1.66681 1.12346 1.18138 1.43214 0.92114 0.84639 0.94531 1.26263 0.96473 1.00646 0.94398 1.69965 1.40827 1.36094 1.11132 0.86572 0.75846 0.83471 0.79669 1.23637 1.16118 1.22775 1.21179 0.87134 0.95823 0.91564 0.95911 1.21584 0.98180 0.99172 0.99016 1.21998 0.90877 0.94377 0.92336 0.92764 0.92323 0.89247 0.91291 0.87573 0.86475 0.90878 0.90839 0.90147 0.75467 0.91116 0.88259 0.94263 0.90269 0.92896 0.92872 0.93159 0.91016 0.93640 0.91747 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.83 113.37 1.23 1.49 16 2 O -0.40 -7.53 10.28 -148.98 -1.53 -9.06 16 3 C 0.08 1.33 2.20 30.71 0.07 1.40 16 4 H 0.09 1.00 7.79 -2.38 -0.02 0.98 16 5 C -0.17 -2.09 5.76 30.69 0.18 -1.92 16 6 C 0.05 0.65 6.85 72.01 0.49 1.15 16 7 O -0.40 -8.35 10.76 -148.98 -1.60 -9.95 16 8 C 0.06 1.34 6.43 72.01 0.46 1.81 16 9 C 0.14 3.17 2.29 45.08 0.10 3.27 16 10 H 0.07 2.07 7.66 -2.39 -0.02 2.05 16 11 N -0.72 -17.87 4.92 -457.37 -2.25 -20.12 16 12 C 0.71 23.48 8.26 179.05 1.48 24.96 16 13 O -0.63 -25.46 15.47 -4.00 -0.06 -25.52 16 14 N -0.62 -20.63 2.95 -835.13 -2.46 -23.09 16 15 C 0.11 3.37 5.87 86.42 0.51 3.88 16 16 C 0.15 5.44 2.42 45.03 0.11 5.55 16 17 H 0.03 1.30 6.48 -2.39 -0.02 1.28 16 18 C -0.13 -4.93 7.66 71.98 0.55 -4.38 16 19 N -0.61 -26.63 2.19 -649.89 -1.42 -28.05 16 20 C -0.25 -13.07 7.19 84.03 0.60 -12.47 16 21 H 0.04 2.16 7.47 -2.91 -0.02 2.14 16 22 C 0.02 1.12 3.92 84.86 0.33 1.45 16 23 N -0.94 -54.81 13.97 21.65 0.30 -54.50 16 24 Si 0.92 43.64 25.21 68.60 1.73 45.37 16 25 H -0.31 -15.38 7.11 99.48 0.71 -14.67 16 26 H -0.24 -10.34 4.69 99.48 0.47 -9.87 16 27 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 28 C 0.15 5.89 3.67 45.18 0.17 6.06 16 29 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 30 C -0.12 -4.56 8.20 71.98 0.59 -3.97 16 31 C 0.13 4.58 5.93 86.57 0.51 5.09 16 32 H 0.05 0.49 8.09 -2.38 -0.02 0.47 16 33 H 0.06 0.45 7.99 -2.39 -0.02 0.43 16 34 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.11 0.79 7.99 -2.38 -0.02 0.77 16 37 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 0.62 8.14 -2.38 -0.02 0.61 16 39 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.41 7.99 6.08 -92.71 -0.56 7.43 16 42 H 0.07 2.16 8.12 -2.38 -0.02 2.14 16 43 H 0.10 2.17 5.62 -2.39 -0.01 2.16 16 44 H 0.04 1.71 2.94 -2.38 -0.01 1.71 16 45 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.05 2.14 7.91 -2.39 -0.02 2.12 16 47 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 48 H 0.05 1.92 7.71 -2.39 -0.02 1.90 16 49 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 50 H 0.04 1.91 7.52 -2.38 -0.02 1.89 16 51 H 0.06 2.27 8.11 -2.39 -0.02 2.25 16 52 H 0.08 3.00 6.99 -2.39 -0.02 2.99 16 Total: -1.00 -70.84 388.17 0.20 -70.64 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.11 Total: 20.92 kcal Atomic # 6 Polarization: 25.98 SS G_CDS: 7.38 Total: 33.36 kcal Atomic # 7 Polarization: -119.93 SS G_CDS: -5.83 Total: -125.76 kcal Atomic # 8 Polarization: -41.34 SS G_CDS: -3.20 Total: -44.54 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.73 Total: 45.37 kcal Total: -70.84 0.20 -70.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898077019.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.797 kcal (2) G-P(sol) polarization free energy of solvation -70.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds