Wall clock time and date at job start Wed Apr 1 2020 01:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.74563 * 2 1 4 4 C 1.53372 * 109.60910 * 239.57926 * 2 1 3 5 5 N 1.46964 * 108.63738 * 190.83162 * 4 2 1 6 6 C 1.34781 * 120.59234 * 235.20198 * 5 4 2 7 7 O 1.21586 * 119.99604 * 185.17252 * 6 5 4 8 8 N 1.34775 * 120.00032 * 5.17459 * 6 5 4 9 9 C 1.46494 * 120.00254 * 174.80913 * 8 6 5 10 10 C 1.52995 * 109.47700 * 180.02562 * 9 8 6 11 11 O 1.42900 * 109.47420 * 64.99103 * 10 9 8 12 12 C 1.42901 * 114.00247 * 180.02562 * 11 10 9 13 13 H 1.09005 * 110.45249 * 27.40437 * 12 11 10 14 14 C 1.54509 * 110.51099 * 150.00268 * 12 11 10 15 15 C 1.54476 * 104.06376 * 118.64581 * 14 12 11 16 16 O 1.44429 * 104.80117 * 23.98245 * 15 14 12 17 17 C 1.44424 * 105.27128 * 319.48442 * 16 15 14 18 18 C 1.46958 * 118.81151 * 55.47275 * 5 4 2 19 19 C 1.53811 * 108.40110 * 304.48439 * 18 5 4 20 20 H 1.08999 * 109.53560 * 169.30473 * 19 18 5 21 21 C 1.53001 * 109.88546 * 289.76863 * 19 18 5 22 22 N 1.46962 * 109.61254 * 120.42988 * 2 1 3 23 23 C 1.36932 * 120.59388 * 354.94848 * 22 2 1 24 24 H 1.08000 * 120.00247 * 123.81513 * 23 22 2 25 25 C 1.38814 * 120.00005 * 303.81260 * 23 22 2 26 26 N 1.31618 * 119.99835 * 155.62663 * 25 23 22 27 27 Si 1.86802 * 120.00245 * 335.63046 * 25 23 22 28 28 H 1.48496 * 109.47332 * 93.71669 * 27 25 23 29 29 H 1.48500 * 109.47135 * 213.72012 * 27 25 23 30 30 H 1.48504 * 109.46815 * 333.72384 * 27 25 23 31 31 H 1.08994 * 109.47042 * 181.47374 * 1 2 3 32 32 H 1.09002 * 109.46954 * 301.46972 * 1 2 3 33 33 H 1.08996 * 109.47583 * 61.47091 * 1 2 3 34 34 H 1.08999 * 109.61267 * 71.08206 * 4 2 1 35 35 H 1.09003 * 109.60496 * 310.57451 * 4 2 1 36 36 H 0.97005 * 120.00060 * 354.80253 * 8 6 5 37 37 H 1.09001 * 109.47604 * 59.99216 * 9 8 6 38 38 H 1.09009 * 109.46818 * 299.99378 * 9 8 6 39 39 H 1.08996 * 109.47696 * 184.99835 * 10 9 8 40 40 H 1.09001 * 109.46534 * 304.99804 * 10 9 8 41 41 H 1.08996 * 110.51227 * 237.29475 * 14 12 11 42 42 H 1.09005 * 110.50908 * 0.02562 * 14 12 11 43 43 H 1.08996 * 110.37439 * 142.81043 * 15 14 12 44 44 H 1.09001 * 110.37298 * 265.14887 * 15 14 12 45 45 H 1.09000 * 110.37667 * 281.68081 * 17 16 15 46 46 H 1.09002 * 110.37364 * 159.34690 * 17 16 15 47 47 H 1.08992 * 109.61391 * 64.26793 * 18 5 4 48 48 H 1.09004 * 109.60838 * 184.78152 * 18 5 4 49 49 H 1.08995 * 109.47578 * 179.24190 * 21 19 18 50 50 H 1.09001 * 109.46902 * 299.23876 * 21 19 18 51 51 H 1.09007 * 109.47015 * 59.23890 * 21 19 18 52 52 H 0.96997 * 120.00164 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0260 0.0000 4 6 2.0447 -0.7316 -1.2459 5 7 3.4908 -0.9488 -1.0991 6 6 4.3491 -0.5132 -2.0424 7 8 5.5323 -0.7802 -1.9577 8 7 3.8960 0.2185 -3.0797 9 6 4.8414 0.7878 -4.0430 10 6 4.0732 1.5671 -5.1122 11 8 3.4248 2.6893 -4.5102 12 6 2.6747 3.4882 -5.4274 13 1 2.3327 2.8837 -6.2675 14 6 1.4753 4.1504 -4.7132 15 6 1.7391 5.6651 -4.8627 16 8 2.5881 5.7788 -6.0255 17 6 3.5212 4.6811 -5.9240 18 6 3.9836 -1.6549 0.0919 19 6 3.4694 -0.9184 1.3404 20 1 3.6602 -1.5249 2.2258 21 6 4.1797 0.4297 1.4788 22 7 2.0233 -0.7012 1.1937 23 6 1.1512 -1.1438 2.1521 24 1 1.1418 -2.1864 2.4336 25 6 0.2793 -0.2523 2.7620 26 7 -0.8424 -0.6891 3.2945 27 14 0.6977 1.5671 2.8269 28 1 0.0767 2.2595 1.6694 29 1 0.1773 2.1499 4.0898 30 1 2.1719 1.7381 2.7733 31 1 -0.3633 -1.0273 0.0264 32 1 -0.3633 0.5365 0.8765 33 1 -0.3634 0.4908 -0.9028 34 1 1.8539 -0.1251 -2.1312 35 1 1.5383 -1.6921 -1.3413 36 1 2.9437 0.3679 -3.1884 37 1 5.4076 -0.0153 -4.5146 38 1 5.5263 1.4601 -3.5259 39 1 4.7673 1.9156 -5.8769 40 1 3.3261 0.9176 -5.5684 41 1 0.5406 3.8754 -5.2016 42 1 1.4548 3.8688 -3.6603 43 1 0.8027 6.1994 -5.0230 44 1 2.2503 6.0502 -3.9804 45 1 4.3058 4.9152 -5.2045 46 1 3.9538 4.4593 -6.8996 47 1 3.6121 -2.6796 0.0895 48 1 5.0736 -1.6583 0.0902 49 1 3.8009 0.9516 2.3575 50 1 5.2518 0.2660 1.5875 51 1 3.9924 1.0320 0.5897 52 1 -1.4515 -0.0663 3.7210 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927528250.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:40 Heat of formation + Delta-G solvation = -75.957445 kcal Electronic energy + Delta-G solvation = -32108.244597 eV Core-core repulsion = 27916.562666 eV Total energy + Delta-G solvation = -4191.681932 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.20894 -39.90580 -37.97959 -37.40708 -34.74197 -34.11749 -32.82403 -31.69130 -31.58299 -29.60692 -28.72011 -28.25413 -26.30928 -25.59497 -23.49064 -23.30700 -22.75494 -21.55615 -21.21346 -20.16790 -18.62685 -18.09861 -17.68040 -16.90738 -16.49106 -16.43168 -15.79182 -15.58380 -15.32388 -15.02947 -14.85059 -14.74714 -14.25283 -13.90556 -13.81878 -13.56600 -13.37450 -13.28347 -12.90677 -12.65259 -12.53513 -12.39716 -12.20823 -12.03883 -11.69260 -11.60927 -11.60805 -11.52832 -11.27473 -11.11724 -11.02583 -10.58564 -10.55982 -10.30157 -10.25194 -10.02762 -9.90918 -9.85310 -9.63966 -9.56391 -9.01773 -8.50967 -8.07253 -6.46615 -6.10981 -3.69790 2.90284 3.08451 3.28638 3.42952 3.50846 3.52282 3.69377 4.09879 4.15951 4.35524 4.45706 4.52207 4.63473 4.81172 4.84123 4.85669 4.90609 4.99180 5.16432 5.25910 5.29708 5.37707 5.45970 5.50953 5.54069 5.59873 5.60064 5.63631 5.72446 5.86949 5.99892 6.07473 6.22119 6.25296 6.29412 6.33491 6.40998 6.50648 6.57668 6.60380 6.72860 6.81152 6.87166 6.94625 7.09409 7.30108 7.33666 8.02257 8.23609 8.50042 8.87783 8.97307 9.60315 10.18318 11.00757 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010984 B = 0.003554 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.492102 B = 7876.208801 C = 9560.264509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.155 3.845 3 H 0.029 0.971 4 C 0.102 3.898 5 N -0.615 5.615 6 C 0.706 3.294 7 O -0.603 6.603 8 N -0.748 5.748 9 C 0.144 3.856 10 C 0.048 3.952 11 O -0.369 6.369 12 C 0.056 3.944 13 H 0.078 0.922 14 C -0.158 4.158 15 C 0.045 3.955 16 O -0.374 6.374 17 C 0.024 3.976 18 C 0.120 3.880 19 C 0.149 3.851 20 H 0.082 0.918 21 C -0.162 4.162 22 N -0.591 5.591 23 C -0.281 4.281 24 H 0.069 0.931 25 C 0.065 3.935 26 N -0.886 5.886 27 Si 0.861 3.139 28 H -0.283 1.283 29 H -0.301 1.301 30 H -0.257 1.257 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.033 0.967 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.398 0.602 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.093 0.907 47 H 0.062 0.938 48 H 0.084 0.916 49 H 0.058 0.942 50 H 0.042 0.958 51 H 0.041 0.959 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.634 7.147 -18.757 20.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.048 3.952 3 H 0.046 0.954 4 C -0.023 4.023 5 N -0.350 5.350 6 C 0.408 3.592 7 O -0.483 6.483 8 N -0.407 5.407 9 C 0.019 3.981 10 C -0.029 4.029 11 O -0.288 6.288 12 C -0.003 4.003 13 H 0.096 0.904 14 C -0.195 4.195 15 C -0.032 4.032 16 O -0.292 6.292 17 C -0.053 4.053 18 C -0.004 4.004 19 C 0.043 3.957 20 H 0.100 0.900 21 C -0.221 4.221 22 N -0.315 5.315 23 C -0.409 4.409 24 H 0.087 0.913 25 C -0.139 4.139 26 N -0.524 5.524 27 Si 0.689 3.311 28 H -0.210 1.210 29 H -0.229 1.229 30 H -0.182 1.182 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.235 0.765 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.104 0.896 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.111 0.889 47 H 0.080 0.920 48 H 0.102 0.898 49 H 0.077 0.923 50 H 0.061 0.939 51 H 0.061 0.939 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.327 7.176 -18.539 20.862 hybrid contribution -0.450 1.055 -0.074 1.149 sum 5.877 8.231 -18.613 21.183 Atomic orbital electron populations 1.21984 0.94244 1.03234 1.00342 1.20968 0.94057 0.93750 0.86401 0.95361 1.22298 0.80219 1.00866 0.98894 1.47139 1.06308 1.60071 1.21496 1.15818 0.84920 0.78756 0.79701 1.90857 1.15155 1.63718 1.78557 1.45170 1.10296 1.56965 1.28299 1.21126 0.91455 0.96208 0.89319 1.22907 0.96496 0.87732 0.95787 1.88059 1.66732 1.39614 1.34373 1.23510 0.91717 0.92571 0.92455 0.90411 1.23053 0.97544 0.95491 1.03432 1.23436 0.95174 0.95555 0.88992 1.89141 1.46881 1.49051 1.44169 1.23941 0.93037 0.86210 1.02158 1.22166 0.99417 0.94857 0.83980 1.21242 0.85232 0.94204 0.95066 0.90005 1.22288 0.98683 0.99673 1.01416 1.44261 1.00297 1.67949 1.18983 1.18455 1.13979 0.93300 1.15215 0.91339 1.25902 0.95569 0.97723 0.94686 1.69932 1.08502 1.35591 1.38389 0.87326 0.80206 0.87262 0.76341 1.20996 1.22870 1.18160 0.91264 0.90888 0.94842 0.92078 0.91181 0.76527 0.90150 0.91009 0.91497 0.92323 0.89631 0.88655 0.88706 0.91752 0.91007 0.88890 0.91979 0.89800 0.92331 0.93909 0.93941 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 7.87 37.16 0.29 -2.54 16 2 C 0.15 3.07 2.11 -67.49 -0.14 2.93 16 3 H 0.03 0.60 7.05 -51.93 -0.37 0.24 16 4 C 0.10 1.68 5.90 -3.60 -0.02 1.66 16 5 N -0.61 -10.65 2.60 -177.95 -0.46 -11.11 16 6 C 0.71 12.15 8.29 -86.92 -0.72 11.43 16 7 O -0.60 -12.13 15.78 5.29 0.08 -12.05 16 8 N -0.75 -9.98 5.42 -65.23 -0.35 -10.33 16 9 C 0.14 1.55 6.06 -4.05 -0.02 1.52 16 10 C 0.05 0.37 5.91 37.15 0.22 0.59 16 11 O -0.37 -3.58 9.92 -35.23 -0.35 -3.93 16 12 C 0.06 0.45 3.61 -25.17 -0.09 0.36 16 13 H 0.08 0.51 7.82 -51.93 -0.41 0.10 16 14 C -0.16 -1.27 6.90 -25.16 -0.17 -1.45 16 15 C 0.05 0.37 7.63 37.93 0.29 0.66 16 16 O -0.37 -3.77 11.65 -35.23 -0.41 -4.18 16 17 C 0.02 0.20 7.38 37.93 0.28 0.48 16 18 C 0.12 2.16 6.00 -3.37 -0.02 2.14 16 19 C 0.15 2.97 3.30 -67.25 -0.22 2.75 16 20 H 0.08 1.64 7.93 -51.93 -0.41 1.22 16 21 C -0.16 -3.15 9.14 37.16 0.34 -2.81 16 22 N -0.59 -13.09 1.84 -156.76 -0.29 -13.38 16 23 C -0.28 -7.27 8.67 -15.06 -0.13 -7.40 16 24 H 0.07 1.96 8.06 -52.49 -0.42 1.54 16 25 C 0.06 1.73 3.74 -17.43 -0.07 1.66 16 26 N -0.89 -25.14 13.97 55.49 0.78 -24.36 16 27 Si 0.86 20.98 25.29 -169.99 -4.30 16.68 16 28 H -0.28 -6.74 6.63 56.52 0.37 -6.36 16 29 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 30 H -0.26 -6.21 5.04 56.52 0.29 -5.92 16 31 H 0.07 1.48 7.84 -51.93 -0.41 1.07 16 32 H 0.07 1.69 3.34 -51.93 -0.17 1.52 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.83 5.55 -51.93 -0.29 0.54 16 35 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 36 H 0.40 4.78 5.92 -40.82 -0.24 4.54 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.39 8.11 -51.93 -0.42 -0.03 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.87 8.00 -51.93 -0.42 0.46 16 43 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 46 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 48 H 0.08 1.51 7.00 -51.93 -0.36 1.15 16 49 H 0.06 1.23 6.10 -51.93 -0.32 0.91 16 50 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 51 H 0.04 0.85 7.04 -51.93 -0.37 0.49 16 52 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 393.44 15.07 5.93 5.93 Total: -1.00 -31.55 393.44 -8.51 -40.07 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -8.95 Total: 4.69 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: -0.19 Total: 11.97 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: -0.33 Total: -59.18 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.68 Total: -20.16 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.30 Total: 16.68 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.55 -8.51 -40.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927528250.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.891 kcal (2) G-P(sol) polarization free energy of solvation -31.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds