Wall clock time and date at job start Wed Apr 1 2020 01:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.74563 * 2 1 4 4 C 1.53372 * 109.60910 * 239.57926 * 2 1 3 5 5 N 1.46964 * 108.63738 * 190.83162 * 4 2 1 6 6 C 1.34781 * 120.59234 * 235.20198 * 5 4 2 7 7 O 1.21586 * 119.99604 * 185.17252 * 6 5 4 8 8 N 1.34775 * 120.00032 * 5.17459 * 6 5 4 9 9 C 1.46494 * 120.00254 * 174.80913 * 8 6 5 10 10 C 1.52995 * 109.47700 * 180.02562 * 9 8 6 11 11 O 1.42900 * 109.47420 * 64.99103 * 10 9 8 12 12 C 1.42901 * 114.00247 * 180.02562 * 11 10 9 13 13 H 1.09005 * 110.45249 * 27.40437 * 12 11 10 14 14 C 1.54509 * 110.51099 * 150.00268 * 12 11 10 15 15 C 1.54476 * 104.06376 * 118.64581 * 14 12 11 16 16 O 1.44429 * 104.80117 * 23.98245 * 15 14 12 17 17 C 1.44424 * 105.27128 * 319.48442 * 16 15 14 18 18 C 1.46958 * 118.81151 * 55.47275 * 5 4 2 19 19 C 1.53811 * 108.40110 * 304.48439 * 18 5 4 20 20 H 1.08999 * 109.53560 * 169.30473 * 19 18 5 21 21 C 1.53001 * 109.88546 * 289.76863 * 19 18 5 22 22 N 1.46962 * 109.61254 * 120.42988 * 2 1 3 23 23 C 1.36932 * 120.59388 * 354.94848 * 22 2 1 24 24 H 1.08000 * 120.00247 * 123.81513 * 23 22 2 25 25 C 1.38814 * 120.00005 * 303.81260 * 23 22 2 26 26 N 1.31618 * 119.99835 * 155.62663 * 25 23 22 27 27 Si 1.86802 * 120.00245 * 335.63046 * 25 23 22 28 28 H 1.48496 * 109.47332 * 93.71669 * 27 25 23 29 29 H 1.48500 * 109.47135 * 213.72012 * 27 25 23 30 30 H 1.48504 * 109.46815 * 333.72384 * 27 25 23 31 31 H 1.08994 * 109.47042 * 181.47374 * 1 2 3 32 32 H 1.09002 * 109.46954 * 301.46972 * 1 2 3 33 33 H 1.08996 * 109.47583 * 61.47091 * 1 2 3 34 34 H 1.08999 * 109.61267 * 71.08206 * 4 2 1 35 35 H 1.09003 * 109.60496 * 310.57451 * 4 2 1 36 36 H 0.97005 * 120.00060 * 354.80253 * 8 6 5 37 37 H 1.09001 * 109.47604 * 59.99216 * 9 8 6 38 38 H 1.09009 * 109.46818 * 299.99378 * 9 8 6 39 39 H 1.08996 * 109.47696 * 184.99835 * 10 9 8 40 40 H 1.09001 * 109.46534 * 304.99804 * 10 9 8 41 41 H 1.08996 * 110.51227 * 237.29475 * 14 12 11 42 42 H 1.09005 * 110.50908 * 0.02562 * 14 12 11 43 43 H 1.08996 * 110.37439 * 142.81043 * 15 14 12 44 44 H 1.09001 * 110.37298 * 265.14887 * 15 14 12 45 45 H 1.09000 * 110.37667 * 281.68081 * 17 16 15 46 46 H 1.09002 * 110.37364 * 159.34690 * 17 16 15 47 47 H 1.08992 * 109.61391 * 64.26793 * 18 5 4 48 48 H 1.09004 * 109.60838 * 184.78152 * 18 5 4 49 49 H 1.08995 * 109.47578 * 179.24190 * 21 19 18 50 50 H 1.09001 * 109.46902 * 299.23876 * 21 19 18 51 51 H 1.09007 * 109.47015 * 59.23890 * 21 19 18 52 52 H 0.96997 * 120.00164 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0260 0.0000 4 6 2.0447 -0.7316 -1.2459 5 7 3.4908 -0.9488 -1.0991 6 6 4.3491 -0.5132 -2.0424 7 8 5.5323 -0.7802 -1.9577 8 7 3.8960 0.2185 -3.0797 9 6 4.8414 0.7878 -4.0430 10 6 4.0732 1.5671 -5.1122 11 8 3.4248 2.6893 -4.5102 12 6 2.6747 3.4882 -5.4274 13 1 2.3327 2.8837 -6.2675 14 6 1.4753 4.1504 -4.7132 15 6 1.7391 5.6651 -4.8627 16 8 2.5881 5.7788 -6.0255 17 6 3.5212 4.6811 -5.9240 18 6 3.9836 -1.6549 0.0919 19 6 3.4694 -0.9184 1.3404 20 1 3.6602 -1.5249 2.2258 21 6 4.1797 0.4297 1.4788 22 7 2.0233 -0.7012 1.1937 23 6 1.1512 -1.1438 2.1521 24 1 1.1418 -2.1864 2.4336 25 6 0.2793 -0.2523 2.7620 26 7 -0.8424 -0.6891 3.2945 27 14 0.6977 1.5671 2.8269 28 1 0.0767 2.2595 1.6694 29 1 0.1773 2.1499 4.0898 30 1 2.1719 1.7381 2.7733 31 1 -0.3633 -1.0273 0.0264 32 1 -0.3633 0.5365 0.8765 33 1 -0.3634 0.4908 -0.9028 34 1 1.8539 -0.1251 -2.1312 35 1 1.5383 -1.6921 -1.3413 36 1 2.9437 0.3679 -3.1884 37 1 5.4076 -0.0153 -4.5146 38 1 5.5263 1.4601 -3.5259 39 1 4.7673 1.9156 -5.8769 40 1 3.3261 0.9176 -5.5684 41 1 0.5406 3.8754 -5.2016 42 1 1.4548 3.8688 -3.6603 43 1 0.8027 6.1994 -5.0230 44 1 2.2503 6.0502 -3.9804 45 1 4.3058 4.9152 -5.2045 46 1 3.9538 4.4593 -6.8996 47 1 3.6121 -2.6796 0.0895 48 1 5.0736 -1.6583 0.0902 49 1 3.8009 0.9516 2.3575 50 1 5.2518 0.2660 1.5875 51 1 3.9924 1.0320 0.5897 52 1 -1.4515 -0.0663 3.7210 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927528250.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:39 Heat of formation + Delta-G solvation = -97.972957 kcal Electronic energy + Delta-G solvation = -32109.199262 eV Core-core repulsion = 27916.562666 eV Total energy + Delta-G solvation = -4192.636596 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.47744 -40.62012 -39.29264 -38.33055 -35.85980 -35.75632 -34.32132 -33.50674 -32.36423 -30.51427 -29.98243 -29.33848 -27.79754 -27.08532 -25.15936 -24.05458 -23.61461 -22.72938 -22.15846 -21.53285 -20.26436 -19.49335 -18.40386 -18.16221 -17.66223 -17.40939 -16.94080 -16.64971 -16.60486 -16.27567 -16.00333 -15.77523 -15.39752 -15.37292 -15.18129 -14.97422 -14.49188 -14.44224 -14.23099 -13.98893 -13.91071 -13.67015 -13.27138 -13.22970 -13.11461 -12.84768 -12.70693 -12.68580 -12.41009 -12.29360 -12.21590 -12.18329 -11.89577 -11.75021 -11.68931 -11.60455 -11.42488 -11.09377 -10.92792 -10.51532 -10.50297 -10.18985 -9.54256 -8.32682 -8.14614 -5.75844 1.32421 1.43208 1.54480 1.68618 2.18642 2.43472 2.46652 2.93270 3.04607 3.10482 3.31149 3.55496 3.77041 3.94068 3.98452 4.06222 4.07975 4.20971 4.23831 4.24858 4.31872 4.36051 4.45467 4.49684 4.51885 4.64426 4.66057 4.68776 4.72180 4.77923 4.79474 4.81623 4.86853 4.89034 4.93219 4.98157 5.02371 5.05276 5.15334 5.27494 5.37200 5.52042 5.55524 5.67929 5.68761 5.96810 6.06924 6.22600 6.38098 6.98830 7.12636 7.57679 7.60928 8.21970 8.96355 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010984 B = 0.003554 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.492102 B = 7876.208801 C = 9560.264509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.152 3.848 3 H 0.023 0.977 4 C 0.113 3.887 5 N -0.619 5.619 6 C 0.704 3.296 7 O -0.634 6.634 8 N -0.735 5.735 9 C 0.140 3.860 10 C 0.053 3.947 11 O -0.391 6.391 12 C 0.057 3.943 13 H 0.099 0.901 14 C -0.158 4.158 15 C 0.040 3.960 16 O -0.393 6.393 17 C 0.021 3.979 18 C 0.130 3.870 19 C 0.146 3.854 20 H 0.074 0.926 21 C -0.149 4.149 22 N -0.600 5.600 23 C -0.267 4.267 24 H 0.032 0.968 25 C 0.032 3.968 26 N -0.928 5.928 27 Si 0.909 3.091 28 H -0.271 1.271 29 H -0.312 1.312 30 H -0.254 1.254 31 H 0.050 0.950 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.406 0.594 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.108 0.892 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.112 0.888 47 H 0.063 0.937 48 H 0.085 0.915 49 H 0.040 0.960 50 H 0.061 0.939 51 H 0.036 0.964 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.121 8.038 -21.677 23.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.046 3.954 3 H 0.041 0.959 4 C -0.012 4.012 5 N -0.354 5.354 6 C 0.405 3.595 7 O -0.516 6.516 8 N -0.394 5.394 9 C 0.016 3.984 10 C -0.023 4.023 11 O -0.310 6.310 12 C -0.001 4.001 13 H 0.117 0.883 14 C -0.195 4.195 15 C -0.036 4.036 16 O -0.313 6.313 17 C -0.056 4.056 18 C 0.005 3.995 19 C 0.039 3.961 20 H 0.092 0.908 21 C -0.208 4.208 22 N -0.325 5.325 23 C -0.397 4.397 24 H 0.049 0.951 25 C -0.168 4.168 26 N -0.568 5.568 27 Si 0.737 3.263 28 H -0.197 1.197 29 H -0.241 1.241 30 H -0.179 1.179 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.090 0.910 36 H 0.244 0.756 37 H 0.105 0.895 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.118 0.882 42 H 0.101 0.899 43 H 0.126 0.874 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.130 0.870 47 H 0.082 0.918 48 H 0.104 0.896 49 H 0.059 0.941 50 H 0.080 0.920 51 H 0.055 0.945 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.821 8.092 -21.511 23.974 hybrid contribution -0.555 0.745 0.805 1.229 sum 6.266 8.836 -20.706 23.369 Atomic orbital electron populations 1.21898 0.94420 1.02073 1.00920 1.21046 0.93954 0.93557 0.86852 0.95884 1.22175 0.79530 1.01100 0.98362 1.47135 1.06680 1.60158 1.21417 1.15969 0.84366 0.78884 0.80257 1.90837 1.16494 1.64919 1.79385 1.45153 1.11188 1.55578 1.27439 1.21299 0.91363 0.96365 0.89335 1.22942 0.97223 0.87346 0.94837 1.88027 1.67192 1.40280 1.35544 1.23583 0.91283 0.92500 0.92720 0.88304 1.23072 0.98432 0.95143 1.02881 1.23537 0.95484 0.96185 0.88388 1.89119 1.47446 1.49963 1.44739 1.24045 0.92633 0.85943 1.02983 1.21937 0.99368 0.94661 0.83494 1.21295 0.84041 0.94693 0.96032 0.90750 1.22140 0.99723 0.98789 1.00144 1.44349 1.00835 1.68024 1.19302 1.18203 1.14128 0.91704 1.15671 0.95082 1.26248 0.95332 1.00501 0.94702 1.70017 1.09716 1.36685 1.40407 0.86549 0.79940 0.83771 0.76068 1.19686 1.24074 1.17853 0.93056 0.93916 0.90803 0.88469 0.91036 0.75567 0.89504 0.92701 0.89021 0.90417 0.88190 0.89873 0.87414 0.92467 0.92082 0.87015 0.91841 0.89630 0.94093 0.91988 0.94532 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.25 7.87 71.98 0.57 -4.69 16 2 C 0.15 5.76 2.11 45.03 0.09 5.85 16 3 H 0.02 0.93 7.05 -2.38 -0.02 0.91 16 4 C 0.11 3.39 5.90 86.42 0.51 3.90 16 5 N -0.62 -20.10 2.60 -835.16 -2.17 -22.27 16 6 C 0.70 22.56 8.29 179.05 1.49 24.05 16 7 O -0.63 -24.44 15.78 -3.99 -0.06 -24.50 16 8 N -0.73 -17.38 5.42 -478.54 -2.59 -19.97 16 9 C 0.14 2.63 6.06 86.38 0.52 3.16 16 10 C 0.05 0.63 5.91 71.98 0.43 1.05 16 11 O -0.39 -6.39 9.92 -148.98 -1.48 -7.87 16 12 C 0.06 0.74 3.61 31.61 0.11 0.86 16 13 H 0.10 0.87 7.82 -2.38 -0.02 0.86 16 14 C -0.16 -2.17 6.90 31.61 0.22 -1.95 16 15 C 0.04 0.61 7.63 72.48 0.55 1.16 16 16 O -0.39 -7.26 11.65 -148.98 -1.74 -9.00 16 17 C 0.02 0.30 7.38 72.48 0.53 0.83 16 18 C 0.13 4.52 6.00 86.57 0.52 5.04 16 19 C 0.15 5.71 3.30 45.18 0.15 5.86 16 20 H 0.07 2.99 7.93 -2.39 -0.02 2.97 16 21 C -0.15 -5.63 9.14 71.98 0.66 -4.97 16 22 N -0.60 -26.35 1.84 -649.87 -1.19 -27.54 16 23 C -0.27 -14.10 8.67 84.03 0.73 -13.37 16 24 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 25 C 0.03 1.75 3.74 84.86 0.32 2.07 16 26 N -0.93 -53.92 13.97 21.65 0.30 -53.62 16 27 Si 0.91 43.54 25.29 68.60 1.73 45.28 16 28 H -0.27 -12.33 6.63 99.48 0.66 -11.67 16 29 H -0.31 -15.46 7.11 99.48 0.71 -14.75 16 30 H -0.25 -11.94 5.04 99.48 0.50 -11.44 16 31 H 0.05 2.15 7.84 -2.39 -0.02 2.13 16 32 H 0.04 1.93 3.34 -2.39 -0.01 1.92 16 33 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.10 2.23 5.55 -2.39 -0.01 2.21 16 35 H 0.07 2.18 8.12 -2.39 -0.02 2.16 16 36 H 0.41 8.16 5.92 -92.70 -0.55 7.61 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.09 0.67 8.14 -2.39 -0.02 0.66 16 40 H 0.08 0.66 8.11 -2.39 -0.02 0.65 16 41 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.08 1.35 8.00 -2.38 -0.02 1.33 16 43 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.06 0.98 8.08 -2.39 -0.02 0.96 16 46 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 48 H 0.09 2.98 7.00 -2.39 -0.02 2.96 16 49 H 0.04 1.67 6.10 -2.39 -0.01 1.66 16 50 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 51 H 0.04 1.40 7.04 -2.38 -0.02 1.38 16 52 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -69.26 393.44 0.31 -68.95 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.11 Total: 21.70 kcal Atomic # 6 Polarization: 21.45 SS G_CDS: 7.40 Total: 28.85 kcal Atomic # 7 Polarization: -117.75 SS G_CDS: -5.65 Total: -123.40 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -3.28 Total: -41.37 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.73 Total: 45.28 kcal Total: -69.26 0.31 -68.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927528250.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.024 kcal (2) G-P(sol) polarization free energy of solvation -69.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds