Wall clock time and date at job start Wed Apr 1 2020 01:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.74426 * 2 1 4 4 C 1.53371 * 109.61150 * 239.57880 * 2 1 3 5 5 N 1.46966 * 108.63301 * 190.83292 * 4 2 1 6 6 C 1.34780 * 120.58929 * 235.20016 * 5 4 2 7 7 O 1.21584 * 119.99835 * 184.93372 * 6 5 4 8 8 N 1.34771 * 120.00307 * 4.93777 * 6 5 4 9 9 C 1.46501 * 120.00223 * 175.15955 * 8 6 5 10 10 C 1.53001 * 109.47149 * 179.97438 * 9 8 6 11 11 O 1.42900 * 109.46959 * 65.00566 * 10 9 8 12 12 C 1.42892 * 114.00335 * 179.97438 * 11 10 9 13 13 H 1.09001 * 110.56496 * 332.67693 * 12 11 10 14 14 C 1.54513 * 110.51197 * 210.00073 * 12 11 10 15 15 C 1.54486 * 104.05958 * 241.35304 * 14 12 11 16 16 O 1.44420 * 104.80711 * 23.97819 * 15 14 12 17 17 C 1.44430 * 105.27248 * 319.48841 * 16 15 14 18 18 C 1.46961 * 118.81597 * 55.46939 * 5 4 2 19 19 C 1.53806 * 108.40179 * 304.48792 * 18 5 4 20 20 H 1.09000 * 109.53501 * 169.30077 * 19 18 5 21 21 C 1.53005 * 109.74255 * 289.84748 * 19 18 5 22 22 N 1.46964 * 108.57992 * 49.63360 * 19 18 5 23 23 C 1.36937 * 120.59685 * 124.66600 * 22 19 18 24 24 H 1.08001 * 120.00430 * 218.61024 * 23 22 19 25 25 C 1.38817 * 119.99711 * 38.61847 * 23 22 19 26 26 N 1.31625 * 119.99714 * 0.48676 * 25 23 22 27 27 Si 1.86794 * 120.00154 * 180.48980 * 25 23 22 28 28 H 1.48506 * 109.47277 * 89.99717 * 27 25 23 29 29 H 1.48499 * 109.47172 * 209.99841 * 27 25 23 30 30 H 1.48501 * 109.47170 * 329.99758 * 27 25 23 31 31 H 1.09003 * 109.46884 * 180.42286 * 1 2 3 32 32 H 1.08993 * 109.47804 * 300.42424 * 1 2 3 33 33 H 1.08999 * 109.47521 * 60.42837 * 1 2 3 34 34 H 1.08990 * 109.61295 * 71.08293 * 4 2 1 35 35 H 1.09003 * 109.60467 * 310.56991 * 4 2 1 36 36 H 0.97000 * 119.99977 * 355.16401 * 8 6 5 37 37 H 1.09001 * 109.46532 * 60.00247 * 9 8 6 38 38 H 1.08991 * 109.47094 * 300.00191 * 9 8 6 39 39 H 1.08999 * 109.47789 * 305.00872 * 10 9 8 40 40 H 1.08997 * 109.46919 * 185.00047 * 10 9 8 41 41 H 1.08992 * 110.51407 * 359.97438 * 14 12 11 42 42 H 1.09007 * 110.51190 * 122.71215 * 14 12 11 43 43 H 1.08999 * 110.36742 * 142.81553 * 15 14 12 44 44 H 1.08999 * 110.37214 * 265.03263 * 15 14 12 45 45 H 1.08992 * 110.37093 * 281.67924 * 17 16 15 46 46 H 1.08997 * 110.37124 * 159.33957 * 17 16 15 47 47 H 1.09003 * 109.60660 * 64.27156 * 18 5 4 48 48 H 1.09001 * 109.61293 * 184.78067 * 18 5 4 49 49 H 1.09000 * 109.47124 * 179.15862 * 21 19 18 50 50 H 1.08997 * 109.46411 * 299.15330 * 21 19 18 51 51 H 1.08999 * 109.46991 * 59.15246 * 21 19 18 52 52 H 0.97003 * 119.99505 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0260 0.0000 4 6 2.0447 -0.7315 -1.2458 5 7 3.4908 -0.9488 -1.0988 6 6 4.3492 -0.5131 -2.0422 7 8 5.5330 -0.7763 -1.9551 8 7 3.8954 0.2144 -3.0820 9 6 4.8401 0.7775 -4.0498 10 6 4.0710 1.5520 -5.1220 11 8 3.4252 2.6783 -4.5249 12 6 2.6756 3.4738 -5.4451 13 1 3.0910 3.3912 -6.4495 14 6 2.6507 4.9500 -4.9894 15 6 1.1520 5.2470 -4.7608 16 8 0.5547 3.9569 -4.5065 17 6 1.1890 3.0537 -5.4380 18 6 3.9836 -1.6547 0.0922 19 6 3.4693 -0.9182 1.3406 20 1 3.6601 -1.5247 2.2260 21 6 4.1800 0.4301 1.4747 22 7 2.0233 -0.7011 1.1937 23 6 1.1511 -1.1438 2.1521 24 1 0.1987 -1.5633 1.8632 25 6 1.4910 -1.0532 3.4950 26 7 2.6475 -0.5330 3.8474 27 14 0.3071 -1.6696 4.8017 28 1 0.5831 -3.1011 5.0843 29 1 0.4849 -0.8765 6.0445 30 1 -1.0882 -1.5212 4.3153 31 1 -0.3633 -1.0277 0.0076 32 1 -0.3634 0.5204 0.8861 33 1 -0.3634 0.5071 -0.8938 34 1 1.8540 -0.1251 -2.1311 35 1 1.5384 -1.6921 -1.3413 36 1 2.9433 0.3652 -3.1896 37 1 5.4038 -0.0290 -4.5187 38 1 5.5272 1.4508 -3.5373 39 1 3.3223 0.9012 -5.5736 40 1 4.7644 1.8956 -5.8896 41 1 3.2098 5.0729 -4.0619 42 1 3.0538 5.5972 -5.7685 43 1 1.0221 5.9018 -3.8992 44 1 0.7150 5.7006 -5.6504 45 1 0.7573 3.1691 -6.4321 46 1 1.0876 2.0236 -5.0966 47 1 3.6122 -2.6795 0.0897 48 1 5.0736 -1.6581 0.0906 49 1 3.8016 0.9546 2.3521 50 1 5.2521 0.2663 1.5836 51 1 3.9926 1.0297 0.5840 52 1 2.8852 -0.4700 4.7857 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927528251.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:42 Heat of formation + Delta-G solvation = -101.518623 kcal Electronic energy + Delta-G solvation = -32117.895231 eV Core-core repulsion = 27925.104884 eV Total energy + Delta-G solvation = -4192.790347 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.41512 -40.56613 -39.12307 -38.20303 -35.82353 -35.56803 -34.19621 -33.16514 -32.31115 -30.36168 -29.68814 -29.27936 -27.73207 -26.86610 -25.41253 -24.10213 -23.37522 -22.44387 -22.11353 -21.60826 -20.34957 -19.32362 -18.27643 -17.84839 -17.45972 -17.35270 -16.94863 -16.75529 -16.56196 -16.05689 -15.80783 -15.74482 -15.46099 -15.22917 -15.02213 -14.83576 -14.54421 -14.34020 -13.83093 -13.67203 -13.55725 -13.45693 -13.03236 -12.88214 -12.84056 -12.75779 -12.59452 -12.46753 -12.43690 -12.32252 -12.26925 -12.24608 -11.96028 -11.75062 -11.66174 -11.56061 -11.45660 -11.07550 -10.96773 -10.41319 -10.32078 -10.19178 -9.49398 -8.34026 -7.76622 -5.36176 1.50365 1.52303 1.59641 1.72160 2.21545 2.55192 2.60135 2.98750 3.06747 3.39164 3.56354 3.61011 3.90615 3.94902 4.12343 4.17440 4.21195 4.22565 4.24765 4.31781 4.44305 4.45948 4.49128 4.57322 4.65095 4.67582 4.73419 4.74954 4.79440 4.83562 4.84196 4.86802 4.91692 4.95040 4.98199 5.11334 5.13483 5.19882 5.37739 5.42859 5.54527 5.58611 5.76400 5.79461 5.82337 5.84532 6.09855 6.31552 6.55283 7.03163 7.26872 7.60268 7.90676 8.49662 9.26522 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012920 B = 0.003186 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.582350 B = 8787.621630 C =10130.815342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.151 3.849 3 H 0.009 0.991 4 C 0.111 3.889 5 N -0.616 5.616 6 C 0.700 3.300 7 O -0.639 6.639 8 N -0.733 5.733 9 C 0.139 3.861 10 C 0.055 3.945 11 O -0.395 6.395 12 C 0.053 3.947 13 H 0.109 0.891 14 C -0.155 4.155 15 C 0.039 3.961 16 O -0.404 6.404 17 C 0.019 3.981 18 C 0.123 3.877 19 C 0.184 3.816 20 H 0.073 0.927 21 C -0.116 4.116 22 N -0.594 5.594 23 C -0.254 4.254 24 H 0.071 0.929 25 C -0.038 4.038 26 N -0.923 5.923 27 Si 0.960 3.040 28 H -0.288 1.288 29 H -0.301 1.301 30 H -0.269 1.269 31 H 0.057 0.943 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.405 0.595 37 H 0.086 0.914 38 H 0.050 0.950 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.069 0.931 42 H 0.112 0.888 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.058 0.942 48 H 0.070 0.930 49 H 0.045 0.955 50 H 0.030 0.970 51 H 0.018 0.982 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.991 8.102 -24.831 26.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.044 3.956 3 H 0.027 0.973 4 C -0.013 4.013 5 N -0.351 5.351 6 C 0.402 3.598 7 O -0.522 6.522 8 N -0.392 5.392 9 C 0.015 3.985 10 C -0.022 4.022 11 O -0.315 6.315 12 C -0.005 4.005 13 H 0.127 0.873 14 C -0.192 4.192 15 C -0.037 4.037 16 O -0.323 6.323 17 C -0.058 4.058 18 C -0.002 4.002 19 C 0.077 3.923 20 H 0.091 0.909 21 C -0.175 4.175 22 N -0.318 5.318 23 C -0.385 4.385 24 H 0.089 0.911 25 C -0.235 4.235 26 N -0.568 5.568 27 Si 0.789 3.211 28 H -0.215 1.215 29 H -0.228 1.228 30 H -0.194 1.194 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.244 0.756 37 H 0.104 0.896 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.114 0.886 41 H 0.088 0.912 42 H 0.130 0.870 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.108 0.892 46 H 0.111 0.889 47 H 0.077 0.923 48 H 0.089 0.911 49 H 0.064 0.936 50 H 0.049 0.951 51 H 0.037 0.963 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.256 7.956 -24.271 25.572 hybrid contribution -0.481 -0.101 1.152 1.252 sum -1.737 7.856 -23.119 24.479 Atomic orbital electron populations 1.21640 0.93462 1.01814 1.01214 1.20946 0.94660 0.92891 0.87106 0.97291 1.22244 0.79398 1.00949 0.98757 1.47149 1.06938 1.59953 1.21089 1.16036 0.84420 0.79006 0.80355 1.90821 1.16657 1.65174 1.79526 1.45118 1.11134 1.55859 1.27073 1.21317 0.91464 0.96461 0.89281 1.22922 0.96975 0.87616 0.94665 1.88078 1.67032 1.40190 1.36227 1.23707 0.91612 0.90885 0.94293 0.87335 1.23125 0.97509 0.94963 1.03624 1.23585 0.91672 0.86043 1.02444 1.89164 1.63673 1.20124 1.59382 1.24144 0.91999 0.95331 0.94339 1.22122 0.98666 0.94805 0.84636 1.20634 0.83531 0.94129 0.94025 0.90922 1.21733 0.97519 0.99333 0.98942 1.44212 1.01588 1.65040 1.20940 1.19331 1.00014 1.33403 0.85717 0.91115 1.26036 0.98341 0.99445 0.99638 1.70089 1.22417 1.48819 1.15479 0.85396 0.79708 0.77102 0.78896 1.21519 1.22754 1.19379 0.92441 0.93955 0.90600 0.88808 0.90863 0.75643 0.89556 0.93117 0.90538 0.88645 0.91230 0.86993 0.89279 0.89995 0.89232 0.88949 0.92331 0.91121 0.93607 0.95123 0.96331 0.94410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.28 8.05 71.98 0.58 -3.70 16 2 C 0.15 6.02 3.23 45.03 0.15 6.17 16 3 H 0.01 0.42 7.40 -2.38 -0.02 0.40 16 4 C 0.11 3.63 5.90 86.41 0.51 4.14 16 5 N -0.62 -23.21 2.58 -835.17 -2.16 -25.37 16 6 C 0.70 25.97 8.30 179.06 1.49 27.46 16 7 O -0.64 -28.19 15.77 -3.98 -0.06 -28.26 16 8 N -0.73 -20.14 5.42 -478.55 -2.59 -22.73 16 9 C 0.14 3.03 6.06 86.38 0.52 3.55 16 10 C 0.05 0.74 5.91 71.98 0.43 1.16 16 11 O -0.40 -7.36 9.92 -148.98 -1.48 -8.84 16 12 C 0.05 0.67 3.61 31.61 0.11 0.79 16 13 H 0.11 0.68 7.82 -2.39 -0.02 0.66 16 14 C -0.15 -2.00 6.90 31.61 0.22 -1.78 16 15 C 0.04 0.57 7.63 72.49 0.55 1.12 16 16 O -0.40 -8.66 11.65 -148.98 -1.74 -10.40 16 17 C 0.02 0.26 7.38 72.49 0.53 0.80 16 18 C 0.12 5.22 5.99 86.56 0.52 5.74 16 19 C 0.18 8.94 2.32 45.18 0.10 9.05 16 20 H 0.07 4.02 6.26 -2.39 -0.01 4.00 16 21 C -0.12 -5.71 8.93 71.98 0.64 -5.07 16 22 N -0.59 -28.67 2.66 -649.87 -1.73 -30.40 16 23 C -0.25 -13.21 8.32 84.03 0.70 -12.51 16 24 H 0.07 3.54 6.48 -2.91 -0.02 3.52 16 25 C -0.04 -2.06 5.22 84.86 0.44 -1.62 16 26 N -0.92 -52.91 9.75 21.65 0.21 -52.70 16 27 Si 0.96 44.04 29.55 68.60 2.03 46.07 16 28 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 29 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 30 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 31 H 0.06 1.95 7.30 -2.39 -0.02 1.94 16 32 H 0.04 1.65 7.75 -2.39 -0.02 1.63 16 33 H 0.08 2.06 8.14 -2.39 -0.02 2.05 16 34 H 0.09 2.43 5.55 -2.39 -0.01 2.41 16 35 H 0.07 2.30 8.12 -2.39 -0.02 2.28 16 36 H 0.41 9.63 5.92 -92.71 -0.55 9.08 16 37 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.10 0.77 8.11 -2.39 -0.02 0.75 16 41 H 0.07 1.22 8.00 -2.39 -0.02 1.20 16 42 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.09 1.34 8.09 -2.39 -0.02 1.32 16 47 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 48 H 0.07 3.12 7.00 -2.39 -0.02 3.10 16 49 H 0.04 2.49 6.98 -2.39 -0.02 2.48 16 50 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 51 H 0.02 0.87 7.02 -2.39 -0.02 0.85 16 52 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -72.50 399.90 0.34 -72.16 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 0.36 Total: 25.16 kcal Atomic # 6 Polarization: 27.79 SS G_CDS: 7.50 Total: 35.29 kcal Atomic # 7 Polarization: -124.92 SS G_CDS: -6.27 Total: -131.19 kcal Atomic # 8 Polarization: -44.21 SS G_CDS: -3.28 Total: -47.49 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -72.50 0.34 -72.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927528251.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.355 kcal (2) G-P(sol) polarization free energy of solvation -72.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds