Wall clock time and date at job start Wed Apr 1 2020 01:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.60531 * 2 1 4 4 C 1.53369 * 109.74906 * 239.57458 * 2 1 3 5 5 N 1.46970 * 108.63153 * 190.74656 * 4 2 1 6 6 C 1.34770 * 120.59426 * 235.24676 * 5 4 2 7 7 O 1.21586 * 119.99902 * 174.84634 * 6 5 4 8 8 N 1.34778 * 120.00031 * 354.85110 * 6 5 4 9 9 C 1.46504 * 119.99833 * 184.96220 * 8 6 5 10 10 C 1.53001 * 109.46997 * 179.97438 * 9 8 6 11 11 O 1.42903 * 109.46807 * 64.99803 * 10 9 8 12 12 C 1.42900 * 113.99888 * 179.97438 * 11 10 9 13 13 H 1.08994 * 110.46014 * 27.39545 * 12 11 10 14 14 C 1.54508 * 110.50988 * 150.00414 * 12 11 10 15 15 C 1.54486 * 104.06484 * 118.64667 * 14 12 11 16 16 O 1.44422 * 104.79930 * 23.97788 * 15 14 12 17 17 C 1.44426 * 105.27949 * 319.48512 * 16 15 14 18 18 C 1.46971 * 118.80948 * 55.22795 * 5 4 2 19 19 C 1.53815 * 108.57681 * 304.64441 * 18 5 4 20 20 H 1.08997 * 109.75845 * 289.95019 * 19 18 5 21 21 C 1.53001 * 109.69207 * 169.29272 * 19 18 5 22 22 N 1.46962 * 109.60560 * 120.34286 * 2 1 3 23 23 C 1.36935 * 120.60096 * 355.11987 * 22 2 1 24 24 H 1.07990 * 120.00184 * 126.11923 * 23 22 2 25 25 C 1.38816 * 119.99578 * 306.12263 * 23 22 2 26 26 N 1.31616 * 119.99526 * 159.72240 * 25 23 22 27 27 Si 1.86800 * 120.00344 * 339.71898 * 25 23 22 28 28 H 1.48493 * 109.47195 * 275.06146 * 27 25 23 29 29 H 1.48511 * 109.46884 * 35.06240 * 27 25 23 30 30 H 1.48501 * 109.47075 * 155.05544 * 27 25 23 31 31 H 1.09000 * 109.47100 * 299.65667 * 1 2 3 32 32 H 1.09004 * 109.47030 * 59.65679 * 1 2 3 33 33 H 1.08998 * 109.46897 * 179.65579 * 1 2 3 34 34 H 1.08994 * 109.61021 * 310.48873 * 4 2 1 35 35 H 1.09002 * 109.61115 * 70.83328 * 4 2 1 36 36 H 0.97000 * 119.99992 * 4.95510 * 8 6 5 37 37 H 1.08994 * 109.46987 * 299.99365 * 9 8 6 38 38 H 1.08997 * 109.47001 * 59.99763 * 9 8 6 39 39 H 1.09001 * 109.47340 * 184.99555 * 10 9 8 40 40 H 1.08997 * 109.47434 * 305.00130 * 10 9 8 41 41 H 1.09001 * 110.51239 * 237.28818 * 14 12 11 42 42 H 1.08996 * 110.51161 * 359.86180 * 14 12 11 43 43 H 1.08999 * 110.37021 * 142.80612 * 15 14 12 44 44 H 1.09004 * 110.36749 * 265.03600 * 15 14 12 45 45 H 1.08997 * 110.37484 * 281.69086 * 17 16 15 46 46 H 1.08996 * 110.37328 * 159.34809 * 17 16 15 47 47 H 1.08997 * 109.61001 * 64.51627 * 18 5 4 48 48 H 1.09002 * 109.60638 * 184.86074 * 18 5 4 49 49 H 1.09000 * 109.47151 * 305.15620 * 21 19 18 50 50 H 1.09004 * 109.47127 * 65.15878 * 21 19 18 51 51 H 1.09002 * 109.46976 * 185.15864 * 21 19 18 52 52 H 0.97010 * 119.99581 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0483 -0.7310 -1.2447 5 7 3.4947 -0.9446 -1.0956 6 6 4.3535 -0.5066 -2.0374 7 8 5.5523 -0.6049 -1.8600 8 7 3.8833 0.0405 -3.1759 9 6 4.8112 0.4168 -4.2454 10 6 4.0257 1.0094 -5.4170 11 8 3.4067 2.2302 -5.0065 12 6 2.6445 2.8691 -6.0326 13 1 2.2743 2.1332 -6.7463 14 6 1.4716 3.6660 -5.4190 15 6 1.7507 5.1268 -5.8372 16 8 2.5723 5.0212 -7.0203 17 6 3.4936 3.9426 -6.7489 18 6 3.9879 -1.6440 0.0992 19 6 3.4700 -0.9080 1.3466 20 1 3.9707 0.0556 1.4403 21 6 3.7389 -1.7536 2.5930 22 7 2.0232 -0.6994 1.1948 23 6 1.1508 -1.1436 2.1522 24 1 1.1689 -2.1783 2.4609 25 6 0.2432 -0.2639 2.7260 26 7 -0.8333 -0.7270 3.3251 27 14 0.5496 1.5772 2.6478 28 1 1.4345 1.9797 3.7703 29 1 1.2017 1.9161 1.3573 30 1 -0.7437 2.2992 2.7534 31 1 -0.3633 0.5085 0.8930 32 1 -0.3633 0.5192 -0.8869 33 1 -0.3633 -1.0276 -0.0062 34 1 1.5445 -1.6928 -1.3404 35 1 1.8546 -0.1268 -2.1310 36 1 2.9306 0.1849 -3.2873 37 1 5.5176 1.1570 -3.8697 38 1 5.3547 -0.4660 -4.5822 39 1 4.7046 1.2073 -6.2466 40 1 3.2594 0.3026 -5.7353 41 1 0.5216 3.3257 -5.8312 42 1 1.4717 3.5707 -4.3332 43 1 0.8174 5.6403 -6.0679 44 1 2.2867 5.6519 -5.0465 45 1 4.2985 4.2856 -6.0988 46 1 3.8992 3.5467 -7.6799 47 1 3.6221 -2.6707 0.0992 48 1 5.0780 -1.6439 0.0993 49 1 3.3037 -2.7442 2.4608 50 1 4.8144 -1.8464 2.7440 51 1 3.2901 -1.2727 3.4621 52 1 -1.4674 -0.1122 3.7264 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927528252.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:46 Heat of formation + Delta-G solvation = -71.761382 kcal Electronic energy + Delta-G solvation = -31749.466641 eV Core-core repulsion = 27557.966664 eV Total energy + Delta-G solvation = -4191.499977 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.19903 -39.90119 -37.98388 -37.43446 -34.75461 -34.20668 -33.08391 -31.74114 -31.54635 -29.64566 -28.73132 -27.95325 -26.29394 -25.77874 -23.64813 -23.32163 -22.58573 -21.57515 -20.63520 -20.16987 -19.33873 -18.03713 -17.67040 -16.92765 -16.53900 -16.33731 -15.81889 -15.55765 -15.30522 -15.07024 -14.95330 -14.89421 -14.34672 -14.06027 -13.68131 -13.62458 -13.34752 -13.28754 -12.73755 -12.64251 -12.46244 -12.34515 -12.14040 -12.04898 -11.79853 -11.68360 -11.62497 -11.39491 -11.28755 -11.13519 -10.86996 -10.55087 -10.41004 -10.31783 -10.17034 -10.06904 -10.02852 -9.93171 -9.77521 -9.42246 -9.03251 -8.52064 -8.09815 -6.47731 -6.06880 -3.65481 2.89207 3.06635 3.32327 3.42690 3.48494 3.49667 3.67689 4.08488 4.14593 4.33840 4.45599 4.50475 4.61914 4.80002 4.82062 4.83986 4.88910 4.97716 5.19855 5.24435 5.28151 5.35646 5.43520 5.50271 5.52064 5.56615 5.57908 5.65406 5.79106 5.89387 5.96371 6.04301 6.23163 6.27625 6.28463 6.31196 6.40381 6.46359 6.56220 6.61027 6.78696 6.81626 6.90340 6.97349 7.17209 7.24819 7.31320 8.04877 8.21687 8.49317 8.85932 8.97330 9.63283 10.18527 11.05631 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011849 B = 0.003227 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.422707 B = 8675.285504 C =10410.297914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.151 3.849 3 H 0.038 0.962 4 C 0.102 3.898 5 N -0.618 5.618 6 C 0.706 3.294 7 O -0.603 6.603 8 N -0.747 5.747 9 C 0.143 3.857 10 C 0.048 3.952 11 O -0.369 6.369 12 C 0.056 3.944 13 H 0.078 0.922 14 C -0.157 4.157 15 C 0.045 3.955 16 O -0.373 6.373 17 C 0.024 3.976 18 C 0.119 3.881 19 C 0.152 3.848 20 H 0.031 0.969 21 C -0.129 4.129 22 N -0.596 5.596 23 C -0.273 4.273 24 H 0.072 0.928 25 C 0.058 3.942 26 N -0.894 5.894 27 Si 0.865 3.135 28 H -0.292 1.292 29 H -0.257 1.257 30 H -0.298 1.298 31 H 0.067 0.933 32 H 0.035 0.965 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.398 0.602 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.093 0.907 47 H 0.063 0.937 48 H 0.083 0.917 49 H 0.055 0.945 50 H 0.040 0.960 51 H 0.070 0.930 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.444 5.159 -19.879 21.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.045 3.955 3 H 0.055 0.945 4 C -0.023 4.023 5 N -0.353 5.353 6 C 0.407 3.593 7 O -0.482 6.482 8 N -0.407 5.407 9 C 0.019 3.981 10 C -0.029 4.029 11 O -0.288 6.288 12 C -0.003 4.003 13 H 0.096 0.904 14 C -0.195 4.195 15 C -0.031 4.031 16 O -0.292 6.292 17 C -0.054 4.054 18 C -0.006 4.006 19 C 0.045 3.955 20 H 0.048 0.952 21 C -0.187 4.187 22 N -0.322 5.322 23 C -0.402 4.402 24 H 0.090 0.910 25 C -0.144 4.144 26 N -0.534 5.534 27 Si 0.694 3.306 28 H -0.219 1.219 29 H -0.183 1.183 30 H -0.225 1.225 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.235 0.765 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.104 0.896 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.111 0.889 47 H 0.081 0.919 48 H 0.101 0.899 49 H 0.074 0.926 50 H 0.059 0.941 51 H 0.089 0.911 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.154 5.284 -19.659 21.267 hybrid contribution -0.534 0.991 -0.073 1.129 sum 5.619 6.275 -19.732 21.455 Atomic orbital electron populations 1.21920 0.94387 1.02886 1.00035 1.21153 0.94027 0.94195 0.86163 0.94468 1.22291 0.80169 1.00850 0.98978 1.47189 1.06333 1.60178 1.21584 1.15832 0.85089 0.78320 0.80034 1.90860 1.13697 1.63891 1.79798 1.45169 1.10600 1.68181 1.16711 1.21133 0.91769 0.99387 0.85859 1.22911 0.96801 0.86083 0.97124 1.88055 1.67148 1.37161 1.36443 1.23512 0.91641 0.95020 0.90101 0.90392 1.23050 0.97771 0.95150 1.03541 1.23428 0.95579 0.96180 0.87961 1.89141 1.48926 1.53601 1.37547 1.23945 0.93222 0.87450 1.00734 1.22222 0.99399 0.95040 0.83912 1.21091 0.86145 0.95866 0.92360 0.95154 1.21674 0.98556 1.00300 0.98184 1.44379 1.00457 1.68205 1.19160 1.18416 1.12367 0.94182 1.15224 0.91019 1.25881 0.96060 0.97700 0.94798 1.69878 1.09999 1.35117 1.38368 0.87372 0.76869 0.87266 0.79075 1.21898 1.18269 1.22497 0.91463 0.94612 0.91261 0.91269 0.92009 0.76512 0.90836 0.90258 0.91473 0.92297 0.89642 0.88684 0.88721 0.91759 0.90996 0.88873 0.91908 0.89872 0.92560 0.94102 0.91142 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 7.67 37.16 0.29 -2.41 16 2 C 0.15 3.04 2.42 -67.48 -0.16 2.88 16 3 H 0.04 0.81 6.48 -51.93 -0.34 0.48 16 4 C 0.10 1.69 5.87 -3.59 -0.02 1.67 16 5 N -0.62 -10.89 2.95 -177.94 -0.52 -11.41 16 6 C 0.71 12.30 8.29 -86.92 -0.72 11.58 16 7 O -0.60 -12.32 15.76 5.29 0.08 -12.23 16 8 N -0.75 -9.97 5.41 -65.23 -0.35 -10.32 16 9 C 0.14 1.53 6.06 -4.04 -0.02 1.50 16 10 C 0.05 0.36 5.91 37.16 0.22 0.58 16 11 O -0.37 -3.51 9.92 -35.23 -0.35 -3.86 16 12 C 0.06 0.44 3.61 -25.16 -0.09 0.34 16 13 H 0.08 0.50 7.82 -51.93 -0.41 0.09 16 14 C -0.16 -1.22 6.90 -25.16 -0.17 -1.39 16 15 C 0.05 0.36 7.63 37.94 0.29 0.65 16 16 O -0.37 -3.67 11.65 -35.23 -0.41 -4.08 16 17 C 0.02 0.19 7.38 37.94 0.28 0.47 16 18 C 0.12 2.16 5.93 -3.36 -0.02 2.14 16 19 C 0.15 3.07 3.67 -67.25 -0.25 2.82 16 20 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 21 C -0.13 -2.42 8.20 37.16 0.30 -2.12 16 22 N -0.60 -13.34 2.18 -156.76 -0.34 -13.68 16 23 C -0.27 -7.02 7.19 -15.06 -0.11 -7.13 16 24 H 0.07 2.03 7.47 -52.49 -0.39 1.63 16 25 C 0.06 1.55 3.93 -17.43 -0.07 1.48 16 26 N -0.89 -25.54 13.97 55.49 0.78 -24.76 16 27 Si 0.87 21.23 25.20 -169.99 -4.28 16.94 16 28 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 29 H -0.26 -6.05 4.69 56.52 0.27 -5.79 16 30 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 31 H 0.07 1.53 2.93 -51.93 -0.15 1.38 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.45 7.91 -51.93 -0.41 1.04 16 34 H 0.07 1.14 8.12 -51.93 -0.42 0.72 16 35 H 0.06 0.84 5.62 -51.93 -0.29 0.55 16 36 H 0.40 4.75 5.95 -40.82 -0.24 4.51 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.38 8.11 -51.93 -0.42 -0.04 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.09 0.82 8.00 -51.93 -0.42 0.41 16 43 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 46 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.06 1.12 8.11 -51.93 -0.42 0.70 16 48 H 0.08 1.52 6.99 -51.93 -0.36 1.16 16 49 H 0.06 1.06 7.71 -51.93 -0.40 0.66 16 50 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 51 H 0.07 1.46 7.52 -51.93 -0.39 1.07 16 52 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 393.17 15.07 5.92 5.92 Total: -1.00 -32.04 393.17 -8.72 -40.77 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -8.98 Total: 3.65 kcal Atomic # 6 Polarization: 13.32 SS G_CDS: -0.26 Total: 13.06 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -0.44 Total: -60.18 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.68 Total: -20.17 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.28 Total: 16.94 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.04 -8.72 -40.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927528252.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.995 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds