Wall clock time and date at job start Wed Apr 1 2020 01:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.60531 * 2 1 4 4 C 1.53369 * 109.74906 * 239.57458 * 2 1 3 5 5 N 1.46970 * 108.63153 * 190.74656 * 4 2 1 6 6 C 1.34770 * 120.59426 * 235.24676 * 5 4 2 7 7 O 1.21586 * 119.99902 * 174.84634 * 6 5 4 8 8 N 1.34778 * 120.00031 * 354.85110 * 6 5 4 9 9 C 1.46504 * 119.99833 * 184.96220 * 8 6 5 10 10 C 1.53001 * 109.46997 * 179.97438 * 9 8 6 11 11 O 1.42903 * 109.46807 * 64.99803 * 10 9 8 12 12 C 1.42900 * 113.99888 * 179.97438 * 11 10 9 13 13 H 1.08994 * 110.46014 * 27.39545 * 12 11 10 14 14 C 1.54508 * 110.50988 * 150.00414 * 12 11 10 15 15 C 1.54486 * 104.06484 * 118.64667 * 14 12 11 16 16 O 1.44422 * 104.79930 * 23.97788 * 15 14 12 17 17 C 1.44426 * 105.27949 * 319.48512 * 16 15 14 18 18 C 1.46971 * 118.80948 * 55.22795 * 5 4 2 19 19 C 1.53815 * 108.57681 * 304.64441 * 18 5 4 20 20 H 1.08997 * 109.75845 * 289.95019 * 19 18 5 21 21 C 1.53001 * 109.69207 * 169.29272 * 19 18 5 22 22 N 1.46962 * 109.60560 * 120.34286 * 2 1 3 23 23 C 1.36935 * 120.60096 * 355.11987 * 22 2 1 24 24 H 1.07990 * 120.00184 * 126.11923 * 23 22 2 25 25 C 1.38816 * 119.99578 * 306.12263 * 23 22 2 26 26 N 1.31616 * 119.99526 * 159.72240 * 25 23 22 27 27 Si 1.86800 * 120.00344 * 339.71898 * 25 23 22 28 28 H 1.48493 * 109.47195 * 275.06146 * 27 25 23 29 29 H 1.48511 * 109.46884 * 35.06240 * 27 25 23 30 30 H 1.48501 * 109.47075 * 155.05544 * 27 25 23 31 31 H 1.09000 * 109.47100 * 299.65667 * 1 2 3 32 32 H 1.09004 * 109.47030 * 59.65679 * 1 2 3 33 33 H 1.08998 * 109.46897 * 179.65579 * 1 2 3 34 34 H 1.08994 * 109.61021 * 310.48873 * 4 2 1 35 35 H 1.09002 * 109.61115 * 70.83328 * 4 2 1 36 36 H 0.97000 * 119.99992 * 4.95510 * 8 6 5 37 37 H 1.08994 * 109.46987 * 299.99365 * 9 8 6 38 38 H 1.08997 * 109.47001 * 59.99763 * 9 8 6 39 39 H 1.09001 * 109.47340 * 184.99555 * 10 9 8 40 40 H 1.08997 * 109.47434 * 305.00130 * 10 9 8 41 41 H 1.09001 * 110.51239 * 237.28818 * 14 12 11 42 42 H 1.08996 * 110.51161 * 359.86180 * 14 12 11 43 43 H 1.08999 * 110.37021 * 142.80612 * 15 14 12 44 44 H 1.09004 * 110.36749 * 265.03600 * 15 14 12 45 45 H 1.08997 * 110.37484 * 281.69086 * 17 16 15 46 46 H 1.08996 * 110.37328 * 159.34809 * 17 16 15 47 47 H 1.08997 * 109.61001 * 64.51627 * 18 5 4 48 48 H 1.09002 * 109.60638 * 184.86074 * 18 5 4 49 49 H 1.09000 * 109.47151 * 305.15620 * 21 19 18 50 50 H 1.09004 * 109.47127 * 65.15878 * 21 19 18 51 51 H 1.09002 * 109.46976 * 185.15864 * 21 19 18 52 52 H 0.97010 * 119.99581 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0483 -0.7310 -1.2447 5 7 3.4947 -0.9446 -1.0956 6 6 4.3535 -0.5066 -2.0374 7 8 5.5523 -0.6049 -1.8600 8 7 3.8833 0.0405 -3.1759 9 6 4.8112 0.4168 -4.2454 10 6 4.0257 1.0094 -5.4170 11 8 3.4067 2.2302 -5.0065 12 6 2.6445 2.8691 -6.0326 13 1 2.2743 2.1332 -6.7463 14 6 1.4716 3.6660 -5.4190 15 6 1.7507 5.1268 -5.8372 16 8 2.5723 5.0212 -7.0203 17 6 3.4936 3.9426 -6.7489 18 6 3.9879 -1.6440 0.0992 19 6 3.4700 -0.9080 1.3466 20 1 3.9707 0.0556 1.4403 21 6 3.7389 -1.7536 2.5930 22 7 2.0232 -0.6994 1.1948 23 6 1.1508 -1.1436 2.1522 24 1 1.1689 -2.1783 2.4609 25 6 0.2432 -0.2639 2.7260 26 7 -0.8333 -0.7270 3.3251 27 14 0.5496 1.5772 2.6478 28 1 1.4345 1.9797 3.7703 29 1 1.2017 1.9161 1.3573 30 1 -0.7437 2.2992 2.7534 31 1 -0.3633 0.5085 0.8930 32 1 -0.3633 0.5192 -0.8869 33 1 -0.3633 -1.0276 -0.0062 34 1 1.5445 -1.6928 -1.3404 35 1 1.8546 -0.1268 -2.1310 36 1 2.9306 0.1849 -3.2873 37 1 5.5176 1.1570 -3.8697 38 1 5.3547 -0.4660 -4.5822 39 1 4.7046 1.2073 -6.2466 40 1 3.2594 0.3026 -5.7353 41 1 0.5216 3.3257 -5.8312 42 1 1.4717 3.5707 -4.3332 43 1 0.8174 5.6403 -6.0679 44 1 2.2867 5.6519 -5.0465 45 1 4.2985 4.2856 -6.0988 46 1 3.8992 3.5467 -7.6799 47 1 3.6221 -2.6707 0.0992 48 1 5.0780 -1.6439 0.0993 49 1 3.3037 -2.7442 2.4608 50 1 4.8144 -1.8464 2.7440 51 1 3.2901 -1.2727 3.4621 52 1 -1.4674 -0.1122 3.7264 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927528252.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:45 Heat of formation + Delta-G solvation = -94.824902 kcal Electronic energy + Delta-G solvation = -31750.466750 eV Core-core repulsion = 27557.966664 eV Total energy + Delta-G solvation = -4192.500086 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.45360 -40.61506 -39.32862 -38.34038 -35.88546 -35.81585 -34.60258 -33.50418 -32.37499 -30.50845 -29.71396 -29.30524 -27.77102 -27.32715 -25.19735 -24.00580 -23.45506 -22.22698 -22.15406 -21.67267 -20.88555 -19.36956 -18.40406 -18.13116 -17.69266 -17.42190 -16.96300 -16.66329 -16.60854 -16.50863 -16.01309 -15.90024 -15.39477 -15.32789 -15.31165 -14.67235 -14.53295 -14.39458 -14.09914 -13.98406 -13.89826 -13.63781 -13.44186 -13.20206 -12.93307 -12.83505 -12.70410 -12.52168 -12.33485 -12.28791 -12.20538 -12.11263 -11.91707 -11.78906 -11.71169 -11.68425 -11.42052 -11.10400 -10.92466 -10.53234 -10.50696 -10.21934 -9.57108 -8.32241 -8.14728 -5.71373 1.33582 1.43377 1.50049 1.67141 2.13398 2.42953 2.46708 2.92220 3.08048 3.10865 3.28799 3.55778 3.77248 3.93874 3.98609 4.02301 4.14615 4.21787 4.24042 4.25219 4.32305 4.38809 4.40612 4.46429 4.52648 4.63541 4.66025 4.69676 4.72745 4.77745 4.80069 4.81335 4.87835 4.88843 4.93043 4.95410 5.02940 5.09362 5.26565 5.33917 5.40035 5.50933 5.60474 5.63598 5.68633 5.97505 6.06465 6.22513 6.39300 6.96232 7.10483 7.54954 7.63179 8.21530 9.00651 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011849 B = 0.003227 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.422707 B = 8675.285504 C =10410.297914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.146 3.854 3 H 0.028 0.972 4 C 0.114 3.886 5 N -0.623 5.623 6 C 0.702 3.298 7 O -0.636 6.636 8 N -0.733 5.733 9 C 0.139 3.861 10 C 0.053 3.947 11 O -0.391 6.391 12 C 0.057 3.943 13 H 0.099 0.901 14 C -0.157 4.157 15 C 0.040 3.960 16 O -0.393 6.393 17 C 0.021 3.979 18 C 0.129 3.871 19 C 0.148 3.852 20 H 0.019 0.981 21 C -0.122 4.122 22 N -0.607 5.607 23 C -0.251 4.251 24 H 0.040 0.960 25 C 0.022 3.978 26 N -0.937 5.937 27 Si 0.913 3.087 28 H -0.308 1.308 29 H -0.240 1.240 30 H -0.300 1.300 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.407 0.593 37 H 0.055 0.945 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.111 0.889 47 H 0.067 0.933 48 H 0.084 0.916 49 H 0.051 0.949 50 H 0.071 0.929 51 H 0.044 0.956 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.816 5.495 -22.924 24.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.040 3.960 3 H 0.045 0.955 4 C -0.011 4.011 5 N -0.358 5.358 6 C 0.403 3.597 7 O -0.518 6.518 8 N -0.392 5.392 9 C 0.016 3.984 10 C -0.023 4.023 11 O -0.311 6.311 12 C -0.001 4.001 13 H 0.117 0.883 14 C -0.195 4.195 15 C -0.036 4.036 16 O -0.313 6.313 17 C -0.056 4.056 18 C 0.004 3.996 19 C 0.042 3.958 20 H 0.037 0.963 21 C -0.179 4.179 22 N -0.334 5.334 23 C -0.380 4.380 24 H 0.057 0.943 25 C -0.177 4.177 26 N -0.579 5.579 27 Si 0.742 3.258 28 H -0.236 1.236 29 H -0.165 1.165 30 H -0.227 1.227 31 H 0.057 0.943 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.245 0.755 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.118 0.882 42 H 0.102 0.898 43 H 0.126 0.874 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.129 0.871 47 H 0.085 0.915 48 H 0.102 0.898 49 H 0.070 0.930 50 H 0.090 0.910 51 H 0.063 0.937 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.528 5.640 -22.766 24.346 hybrid contribution -0.582 0.869 0.841 1.342 sum 5.946 6.510 -21.925 23.631 Atomic orbital electron populations 1.21855 0.94214 1.02143 1.00628 1.21251 0.94242 0.93779 0.86767 0.95476 1.22168 0.79370 1.01211 0.98331 1.47217 1.06800 1.60258 1.21551 1.16005 0.84539 0.78337 0.80773 1.90838 1.15150 1.65231 1.80594 1.45147 1.11489 1.66654 1.15879 1.21319 0.91688 0.99455 0.85979 1.22945 0.97516 0.85809 0.96060 1.88024 1.67615 1.37907 1.37530 1.23589 0.91251 0.95252 0.90034 0.88323 1.23069 0.98609 0.94921 1.02902 1.23534 0.95894 0.96729 0.87438 1.89119 1.49474 1.54384 1.38302 1.24047 0.92804 0.87224 1.01540 1.21987 0.99312 0.94931 0.83328 1.21189 0.84770 0.95804 0.94067 0.96333 1.21587 1.00415 0.99396 0.96545 1.44540 1.01018 1.68230 1.19582 1.18152 1.12010 0.92656 1.15199 0.94290 1.26245 0.95996 1.00377 0.95037 1.69964 1.11260 1.36056 1.40609 0.86611 0.76218 0.83885 0.79056 1.23650 1.16483 1.22712 0.94335 0.90423 0.92703 0.90806 0.88370 0.75489 0.92668 0.89448 0.88990 0.90358 0.88214 0.89775 0.87419 0.92406 0.92073 0.87054 0.91450 0.89792 0.92967 0.90978 0.93732 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.99 7.67 71.98 0.55 -4.44 16 2 C 0.15 5.57 2.42 45.03 0.11 5.68 16 3 H 0.03 1.12 6.48 -2.39 -0.02 1.11 16 4 C 0.11 3.41 5.87 86.41 0.51 3.92 16 5 N -0.62 -20.57 2.95 -835.13 -2.46 -23.03 16 6 C 0.70 22.88 8.29 179.06 1.49 24.37 16 7 O -0.64 -25.06 15.76 -3.99 -0.06 -25.12 16 8 N -0.73 -17.34 5.41 -478.54 -2.59 -19.93 16 9 C 0.14 2.60 6.06 86.38 0.52 3.12 16 10 C 0.05 0.61 5.91 71.98 0.43 1.04 16 11 O -0.39 -6.24 9.92 -148.98 -1.48 -7.72 16 12 C 0.06 0.71 3.61 31.61 0.11 0.83 16 13 H 0.10 0.84 7.82 -2.39 -0.02 0.82 16 14 C -0.16 -2.06 6.90 31.61 0.22 -1.84 16 15 C 0.04 0.58 7.63 72.49 0.55 1.13 16 16 O -0.39 -7.08 11.65 -148.98 -1.74 -8.81 16 17 C 0.02 0.29 7.38 72.49 0.53 0.82 16 18 C 0.13 4.53 5.93 86.56 0.51 5.04 16 19 C 0.15 5.87 3.67 45.18 0.17 6.04 16 20 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 21 C -0.12 -4.54 8.20 71.98 0.59 -3.95 16 22 N -0.61 -26.85 2.18 -649.88 -1.42 -28.27 16 23 C -0.25 -13.05 7.19 84.03 0.60 -12.45 16 24 H 0.04 2.29 7.47 -2.92 -0.02 2.27 16 25 C 0.02 1.20 3.93 84.86 0.33 1.53 16 26 N -0.94 -54.82 13.97 21.65 0.30 -54.52 16 27 Si 0.91 44.26 25.20 68.60 1.73 45.99 16 28 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 29 H -0.24 -10.84 4.69 99.48 0.47 -10.38 16 30 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 31 H 0.04 1.71 2.93 -2.39 -0.01 1.70 16 32 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 33 H 0.05 2.23 7.91 -2.39 -0.02 2.21 16 34 H 0.07 2.21 8.12 -2.39 -0.02 2.19 16 35 H 0.10 2.24 5.62 -2.39 -0.01 2.22 16 36 H 0.41 8.09 5.95 -92.71 -0.55 7.54 16 37 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.08 0.64 8.11 -2.39 -0.02 0.62 16 41 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.08 1.29 8.00 -2.39 -0.02 1.27 16 43 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 45 H 0.06 0.95 8.08 -2.39 -0.02 0.94 16 46 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.07 2.30 8.11 -2.39 -0.02 2.28 16 48 H 0.08 2.96 6.99 -2.39 -0.02 2.94 16 49 H 0.05 1.96 7.71 -2.39 -0.02 1.95 16 50 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 51 H 0.04 1.87 7.52 -2.39 -0.02 1.85 16 52 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 Total: -1.00 -70.78 393.17 -0.37 -71.15 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.12 Total: 19.43 kcal Atomic # 6 Polarization: 23.61 SS G_CDS: 7.23 Total: 30.84 kcal Atomic # 7 Polarization: -119.59 SS G_CDS: -6.17 Total: -125.75 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -3.28 Total: -41.66 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.73 Total: 45.99 kcal Total: -70.78 -0.37 -71.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927528252.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.676 kcal (2) G-P(sol) polarization free energy of solvation -70.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds