Wall clock time and date at job start Wed Apr 1 2020 01:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.50828 * 2 1 4 4 C 1.53098 * 109.54157 * 239.89608 * 2 1 3 5 5 N 1.47020 * 109.26057 * 183.18982 * 4 2 1 6 6 C 1.46890 * 111.00206 * 182.39188 * 5 4 2 7 7 C 1.47018 * 110.74774 * 58.61467 * 5 4 2 8 8 C 1.53100 * 109.25939 * 301.38434 * 7 5 4 9 9 H 1.08994 * 109.50668 * 296.91314 * 8 7 5 10 10 C 1.50698 * 109.50362 * 176.82767 * 8 7 5 11 11 O 1.21286 * 119.99788 * 244.99631 * 10 8 7 12 12 N 1.34775 * 120.00239 * 65.00053 * 10 8 7 13 13 C 1.46496 * 120.00019 * 179.97438 * 12 10 8 14 14 C 1.53003 * 109.47192 * 180.02562 * 13 12 10 15 15 H 1.08998 * 109.40216 * 304.84006 * 14 13 12 16 16 C 1.54289 * 109.40831 * 185.00279 * 14 13 12 17 17 N 1.48180 * 110.69605 * 200.49436 * 16 14 13 18 18 C 1.36934 * 118.51801 * 138.77292 * 17 16 14 19 19 H 1.08000 * 119.99622 * 5.15745 * 18 17 16 20 20 C 1.38803 * 120.00146 * 185.16204 * 18 17 16 21 21 N 1.31617 * 120.00550 * 30.12511 * 20 18 17 22 22 Si 1.86810 * 120.00060 * 210.12495 * 20 18 17 23 23 H 1.48496 * 109.46771 * 94.82620 * 22 20 18 24 24 H 1.48498 * 109.47216 * 214.82566 * 22 20 18 25 25 H 1.48500 * 109.47024 * 334.82995 * 22 20 18 26 26 C 1.44460 * 122.96876 * 318.75000 * 17 16 14 27 27 C 1.54867 * 109.33052 * 88.95643 * 26 17 16 28 28 C 1.47683 * 109.68379 * 290.10028 * 27 26 17 29 29 O 1.40519 * 109.40255 * 64.59530 * 14 13 12 30 30 O 1.43005 * 109.51105 * 120.08908 * 2 1 3 31 31 H 1.09003 * 109.47244 * 299.90708 * 1 2 3 32 32 H 1.09000 * 109.47407 * 59.91115 * 1 2 3 33 33 H 1.09000 * 109.46966 * 179.91179 * 1 2 3 34 34 H 1.09004 * 109.50765 * 63.25991 * 4 2 1 35 35 H 1.08995 * 109.50641 * 303.12525 * 4 2 1 36 36 H 1.09003 * 109.47281 * 292.41468 * 6 5 4 37 37 H 1.08997 * 109.47241 * 172.41482 * 6 5 4 38 38 H 1.08999 * 109.47430 * 52.41189 * 6 5 4 39 39 H 1.08999 * 109.50454 * 61.32317 * 7 5 4 40 40 H 1.08996 * 109.50308 * 181.40627 * 7 5 4 41 41 H 0.96998 * 119.99678 * 359.97438 * 12 10 8 42 42 H 1.09003 * 109.47435 * 300.00075 * 13 12 10 43 43 H 1.09004 * 109.47538 * 60.00573 * 13 12 10 44 44 H 1.09004 * 109.23276 * 320.80836 * 16 14 13 45 45 H 1.08999 * 109.23331 * 80.21934 * 16 14 13 46 46 H 0.96997 * 120.00699 * 180.02562 * 21 20 18 47 47 H 1.09006 * 109.49391 * 208.91779 * 26 17 16 48 48 H 1.08999 * 109.49909 * 328.99759 * 26 17 16 49 49 H 1.09007 * 109.43546 * 50.16927 * 27 26 17 50 50 H 1.09006 * 109.43919 * 170.07406 * 27 26 17 51 51 H 1.09002 * 108.64700 * 181.87958 * 28 27 26 52 52 H 1.08998 * 108.64541 * 299.86075 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0420 -0.7237 -1.2482 5 7 3.5102 -0.7872 -1.2038 6 6 4.0463 -1.4253 -2.4134 7 6 3.9649 -1.4868 0.0066 8 6 3.4335 -0.7554 1.2422 9 1 3.8528 0.2500 1.2784 10 6 3.8308 -1.5113 2.4839 11 8 2.9794 -2.0153 3.1855 12 7 5.1321 -1.6273 2.8149 13 6 5.5183 -2.3616 4.0223 14 6 7.0415 -2.3425 4.1656 15 1 7.4957 -2.7354 3.2559 16 6 7.4546 -3.2204 5.3652 17 7 8.8104 -2.8555 5.8388 18 6 9.0384 -2.7986 7.1879 19 1 8.2644 -3.0973 7.8793 20 6 10.2641 -2.3568 7.6666 21 7 10.9608 -1.4768 6.9792 22 14 10.9250 -3.0114 9.2867 23 1 11.8353 -4.1547 9.0240 24 1 11.6708 -1.9356 9.9878 25 1 9.7940 -3.4641 10.1359 26 6 9.9028 -2.5575 4.9417 27 6 9.8933 -1.0455 4.6068 28 6 8.7290 -0.7322 3.7541 29 8 7.4747 -1.0213 4.3689 30 8 2.0076 -0.6758 1.1663 31 1 -0.3634 0.5124 0.8908 32 1 -0.3634 0.5152 -0.8892 33 1 -0.3633 -1.0277 -0.0016 34 1 1.7281 -0.1795 -2.1390 35 1 1.6347 -1.7342 -1.2758 36 1 3.7651 -2.4784 -2.4238 37 1 5.1329 -1.3394 -2.4184 38 1 3.6387 -0.9318 -3.2957 39 1 3.5882 -2.5096 -0.0010 40 1 5.0545 -1.5004 0.0315 41 1 5.8130 -1.2245 2.2536 42 1 5.0657 -1.8901 4.8947 43 1 5.1731 -3.3928 3.9464 44 1 6.7406 -3.0787 6.1766 45 1 7.4504 -4.2674 5.0623 46 1 11.8175 -1.1684 7.3136 47 1 10.8473 -2.8185 5.4193 48 1 9.7874 -3.1341 4.0239 49 1 9.8320 -0.4699 5.5305 50 1 10.8101 -0.7854 4.0777 51 1 8.7573 0.3278 3.5014 52 1 8.8051 -1.3112 2.8338 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073661073.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:32:45 Heat of formation + Delta-G solvation = -97.724321 kcal Electronic energy + Delta-G solvation = -31391.707595 eV Core-core repulsion = 27199.081781 eV Total energy + Delta-G solvation = -4192.625814 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.53376 -40.49192 -39.70175 -37.08015 -36.79860 -35.90493 -34.19169 -33.56195 -33.03392 -31.02727 -29.89291 -28.02827 -27.25565 -27.10032 -25.81681 -23.94019 -23.48240 -22.38031 -21.85999 -21.56126 -21.13638 -18.75095 -18.36608 -18.02830 -17.73574 -17.20934 -17.01781 -16.76381 -16.45716 -16.24769 -16.18547 -15.76310 -15.42900 -15.30564 -15.19676 -14.77857 -14.36720 -14.25054 -13.93964 -13.83735 -13.71780 -13.57216 -13.39198 -13.30832 -13.16546 -13.07392 -12.84512 -12.71095 -12.68752 -12.33720 -12.21443 -12.08299 -11.90541 -11.78766 -11.74118 -11.38119 -11.10510 -10.90830 -10.71349 -10.40370 -10.19479 -10.18026 -9.51840 -8.79831 -7.78454 -5.06089 1.43829 1.47007 1.51206 1.57777 1.71010 2.54960 2.67642 2.91304 2.94838 3.24629 3.56459 3.59209 3.67246 3.78584 3.93712 4.05129 4.07658 4.11956 4.21481 4.28550 4.32959 4.37540 4.51418 4.55395 4.56453 4.58177 4.60689 4.68558 4.71466 4.72592 4.79745 4.84276 4.85199 5.02011 5.03969 5.05809 5.08251 5.24774 5.25145 5.29570 5.45077 5.64003 5.77223 5.77955 5.88415 6.04335 6.25317 6.35695 6.45952 6.64157 7.11846 7.26619 7.98745 8.29760 9.19184 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024375 B = 0.002251 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.454926 B =12436.639667 C =13041.810458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.079 3.921 3 H 0.075 0.925 4 C 0.023 3.977 5 N -0.545 5.545 6 C 0.023 3.977 7 C 0.035 3.965 8 C 0.084 3.916 9 H 0.108 0.892 10 C 0.519 3.481 11 O -0.570 6.570 12 N -0.702 5.702 13 C 0.134 3.866 14 C 0.077 3.923 15 H 0.079 0.921 16 C 0.124 3.876 17 N -0.606 5.606 18 C -0.263 4.263 19 H 0.065 0.935 20 C -0.046 4.046 21 N -0.905 5.905 22 Si 0.945 3.055 23 H -0.290 1.290 24 H -0.300 1.300 25 H -0.279 1.279 26 C 0.182 3.818 27 C -0.150 4.150 28 C 0.073 3.927 29 O -0.378 6.378 30 O -0.386 6.386 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.055 0.945 34 H 0.112 0.888 35 H 0.036 0.964 36 H 0.027 0.973 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.036 0.964 40 H 0.112 0.888 41 H 0.415 0.585 42 H 0.055 0.945 43 H 0.089 0.911 44 H 0.045 0.955 45 H 0.046 0.954 46 H 0.245 0.755 47 H 0.046 0.954 48 H 0.027 0.973 49 H 0.065 0.935 50 H 0.053 0.947 51 H 0.081 0.919 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.976 2.678 -23.584 27.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.022 3.978 3 H 0.093 0.907 4 C -0.105 4.105 5 N -0.270 5.270 6 C -0.124 4.124 7 C -0.094 4.094 8 C 0.023 3.977 9 H 0.125 0.875 10 C 0.305 3.695 11 O -0.448 6.448 12 N -0.356 5.356 13 C 0.010 3.990 14 C 0.017 3.983 15 H 0.097 0.903 16 C -0.002 4.002 17 N -0.329 5.329 18 C -0.393 4.393 19 H 0.083 0.917 20 C -0.241 4.241 21 N -0.552 5.552 22 Si 0.775 3.225 23 H -0.218 1.218 24 H -0.227 1.227 25 H -0.204 1.204 26 C 0.056 3.944 27 C -0.190 4.190 28 C -0.003 4.003 29 O -0.297 6.297 30 O -0.306 6.306 31 H 0.079 0.921 32 H 0.121 0.879 33 H 0.075 0.925 34 H 0.130 0.870 35 H 0.055 0.945 36 H 0.045 0.955 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.055 0.945 40 H 0.131 0.869 41 H 0.252 0.748 42 H 0.073 0.927 43 H 0.107 0.893 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.054 0.946 47 H 0.064 0.936 48 H 0.045 0.955 49 H 0.084 0.916 50 H 0.072 0.928 51 H 0.099 0.901 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.502 2.903 -22.812 27.187 hybrid contribution 0.976 -0.926 0.982 1.666 sum -13.526 1.977 -21.830 25.757 Atomic orbital electron populations 1.21761 0.91258 1.02975 1.03816 1.22505 0.96151 0.95794 0.83343 0.90658 1.22920 0.87482 1.00254 0.99858 1.62256 1.09429 1.52697 1.02582 1.22477 1.01649 0.96879 0.91429 1.22636 1.02319 0.95299 0.89099 1.21890 0.83682 1.00217 0.91958 0.87476 1.20523 0.82466 0.80036 0.86509 1.90709 1.51148 1.48845 1.54100 1.45669 1.06927 1.55892 1.27071 1.21385 0.93184 0.97248 0.87206 1.22671 0.92649 0.84535 0.98434 0.90299 1.22002 0.86044 0.96331 0.95824 1.44245 1.05859 1.80099 1.02662 1.19519 0.98614 1.37065 0.84121 0.91714 1.25223 0.99514 0.98721 1.00666 1.70473 1.14855 1.28941 1.40916 0.85570 0.78223 0.77730 0.80954 1.21772 1.22716 1.20384 1.20611 0.90922 0.92821 0.90033 1.21974 0.96095 1.00432 1.00542 1.21638 0.83728 1.00679 0.94226 1.87454 1.36602 1.27806 1.77841 1.88096 1.18946 1.79050 1.44463 0.92080 0.87937 0.92544 0.86969 0.94539 0.95483 0.89959 0.89558 0.94527 0.86948 0.74821 0.92683 0.89300 0.93630 0.93578 0.94563 0.93575 0.95483 0.91609 0.92844 0.90087 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.57 71.98 0.69 -1.17 16 2 C 0.08 1.32 3.42 30.62 0.10 1.43 16 3 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 4 C 0.02 0.31 4.94 86.31 0.43 0.73 16 5 N -0.55 -7.65 4.99 -921.44 -4.59 -12.25 16 6 C 0.02 0.23 9.63 127.69 1.23 1.46 16 7 C 0.04 0.58 4.90 86.31 0.42 1.00 16 8 C 0.08 1.81 3.21 29.88 0.10 1.90 16 9 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 10 C 0.52 14.36 7.18 87.66 0.63 14.99 16 11 O -0.57 -21.38 16.51 15.90 0.26 -21.12 16 12 N -0.70 -16.72 5.45 -463.05 -2.53 -19.25 16 13 C 0.13 3.81 5.24 86.38 0.45 4.26 16 14 C 0.08 2.42 2.35 31.03 0.07 2.49 16 15 H 0.08 2.09 7.20 -2.39 -0.02 2.07 16 16 C 0.12 4.81 6.12 86.49 0.53 5.34 16 17 N -0.61 -29.13 2.61 -696.48 -1.82 -30.95 16 18 C -0.26 -14.37 9.55 84.03 0.80 -13.56 16 19 H 0.06 3.56 7.87 -2.91 -0.02 3.54 16 20 C -0.05 -2.51 4.72 84.86 0.40 -2.10 16 21 N -0.91 -50.55 8.38 21.65 0.18 -50.37 16 22 Si 0.95 44.97 29.65 68.60 2.03 47.00 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 24 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 25 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 26 C 0.18 8.28 4.98 87.40 0.44 8.71 16 27 C -0.15 -6.34 5.15 29.57 0.15 -6.19 16 28 C 0.07 2.43 6.05 70.32 0.43 2.85 16 29 O -0.38 -13.74 9.77 -144.87 -1.42 -15.15 16 30 O -0.39 -9.76 9.65 -130.04 -1.26 -11.01 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.11 0.96 8.11 -2.38 -0.02 0.94 16 35 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.03 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.09 0.61 8.08 -2.39 -0.02 0.59 16 39 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.11 1.37 8.01 -2.39 -0.02 1.35 16 41 H 0.41 7.57 8.32 -92.71 -0.77 6.80 16 42 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 44 H 0.05 1.86 7.67 -2.39 -0.02 1.84 16 45 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.24 13.42 8.31 -92.71 -0.77 12.65 16 47 H 0.05 2.41 5.96 -2.38 -0.01 2.40 16 48 H 0.03 1.07 8.10 -2.39 -0.02 1.05 16 49 H 0.07 3.46 6.29 -2.38 -0.01 3.45 16 50 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 51 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 52 H 0.06 1.56 7.26 -2.39 -0.02 1.54 16 Total: -1.00 -71.69 400.52 -2.13 -73.82 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.12 Total: 17.13 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: 6.87 Total: 22.14 kcal Atomic # 7 Polarization: -104.06 SS G_CDS: -8.75 Total: -112.82 kcal Atomic # 8 Polarization: -44.87 SS G_CDS: -2.41 Total: -47.28 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -71.69 -2.13 -73.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073661073.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.905 kcal (2) G-P(sol) polarization free energy of solvation -71.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds