Wall clock time and date at job start Wed Apr 1 2020 00:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47088 * 2 1 4 4 O 1.21272 * 119.99901 * 359.97438 * 3 2 1 5 5 N 1.34772 * 119.99962 * 179.72459 * 3 2 1 6 6 C 1.46506 * 120.00110 * 180.02562 * 5 3 2 7 7 H 1.09003 * 109.47215 * 34.99585 * 6 5 3 8 8 C 1.53009 * 109.46914 * 275.00053 * 6 5 3 9 9 C 1.50697 * 109.47597 * 154.99981 * 6 5 3 10 10 O 1.21285 * 119.99555 * 9.20092 * 9 6 5 11 11 N 1.34769 * 120.00277 * 189.20109 * 9 6 5 12 12 C 1.46933 * 120.62901 * 2.73917 * 11 9 6 13 13 C 1.53634 * 108.53690 * 126.37329 * 12 11 9 14 14 C 1.53038 * 109.24450 * 54.85682 * 13 12 11 15 15 N 1.46499 * 109.46025 * 178.48903 * 14 13 12 16 16 C 1.36929 * 119.99778 * 60.06637 * 15 14 13 17 17 H 1.07997 * 120.00671 * 322.91301 * 16 15 14 18 18 C 1.38814 * 119.99483 * 142.90677 * 16 15 14 19 19 N 1.31619 * 120.00301 * 338.54278 * 18 16 15 20 20 Si 1.86803 * 119.99891 * 158.54495 * 18 16 15 21 21 H 1.48503 * 109.47238 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47311 * 120.00048 * 20 18 16 23 23 H 1.48499 * 109.47406 * 239.99991 * 20 18 16 24 24 C 1.46503 * 119.99923 * 240.07431 * 15 14 13 25 25 C 1.52987 * 109.47497 * 84.39498 * 24 15 14 26 26 O 1.42898 * 109.47230 * 65.00061 * 25 24 15 27 27 C 1.53037 * 109.53902 * 298.51380 * 14 13 12 28 28 C 1.46924 * 120.63481 * 183.02625 * 11 9 6 29 29 H 1.08996 * 109.47107 * 60.00237 * 1 2 3 30 30 H 1.09003 * 109.46864 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47219 * 299.99738 * 1 2 3 32 32 H 1.09005 * 109.47190 * 240.00315 * 2 1 3 33 33 H 1.08998 * 109.47747 * 120.00149 * 2 1 3 34 34 H 0.97003 * 120.00718 * 0.02562 * 5 3 2 35 35 H 1.08994 * 109.47210 * 182.60915 * 8 6 5 36 36 H 1.09000 * 109.46746 * 302.60759 * 8 6 5 37 37 H 1.09002 * 109.46953 * 62.61054 * 8 6 5 38 38 H 1.08999 * 109.58725 * 246.20288 * 12 11 9 39 39 H 1.08999 * 109.58539 * 6.63709 * 12 11 9 40 40 H 1.08999 * 109.63262 * 294.86502 * 13 12 11 41 41 H 1.08994 * 109.42805 * 174.73019 * 13 12 11 42 42 H 1.09004 * 109.45309 * 58.52932 * 14 13 12 43 43 H 0.96999 * 120.00023 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.46590 * 204.39920 * 24 15 14 45 45 H 1.09005 * 109.46559 * 324.39474 * 24 15 14 46 46 H 1.08999 * 109.47109 * 185.00229 * 25 24 15 47 47 H 1.09008 * 109.47263 * 304.99999 * 25 24 15 48 48 H 0.96702 * 114.00070 * 180.02562 * 26 25 24 49 49 H 1.09007 * 109.49356 * 301.40912 * 27 14 13 50 50 H 1.08996 * 109.52498 * 181.33178 * 27 14 13 51 51 H 1.09006 * 109.58167 * 353.37406 * 28 11 9 52 52 H 1.08996 * 109.58748 * 113.64874 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3573 1.6671 0.0056 6 6 3.8457 3.0484 0.0062 7 1 3.1705 3.6723 0.5918 8 6 3.9035 3.5694 -1.4313 9 6 5.2245 3.0935 0.6127 10 8 5.8157 2.0619 0.8520 11 7 5.8005 4.2801 0.8892 12 6 5.0736 5.5365 0.6608 13 6 5.0884 6.3529 1.9621 14 6 6.5355 6.5394 2.4241 15 7 6.5575 7.3482 3.6454 16 6 5.9066 6.9108 4.7680 17 1 4.9641 6.3912 4.6779 18 6 6.4583 7.1352 6.0218 19 7 7.7482 7.3682 6.1412 20 14 5.3701 7.1063 7.5399 21 1 3.9683 6.8243 7.1388 22 1 5.8418 6.0466 8.4671 23 1 5.4350 8.4245 8.2206 24 6 7.2757 8.6249 3.6657 25 6 6.3716 9.7276 3.1114 26 8 5.2532 9.9092 3.9821 27 6 7.1629 5.1724 2.7064 28 6 7.1695 4.3424 1.4189 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.9877 0.9299 0.0093 35 1 4.3104 4.5805 -1.4351 36 1 4.5423 2.9184 -2.0282 37 1 2.8990 3.5804 -1.8545 38 1 5.5611 6.1014 -0.1338 39 1 4.0443 5.3167 0.3773 40 1 4.5259 5.8249 2.7321 41 1 4.6349 7.3278 1.7837 42 1 7.1034 7.0454 1.6434 43 1 8.1338 7.5246 7.0174 44 1 7.5575 8.8669 4.6904 45 1 8.1725 8.5470 3.0510 46 1 6.9341 10.6587 3.0434 47 1 6.0180 9.4435 2.1201 48 1 4.6359 10.5946 3.6917 49 1 6.5808 4.6556 3.4694 50 1 8.1858 5.3067 3.0580 51 1 7.5236 3.3345 1.6356 52 1 7.8248 4.8096 0.6838 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098376614.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:39 Heat of formation + Delta-G solvation = -102.206635 kcal Electronic energy + Delta-G solvation = -31686.064614 eV Core-core repulsion = 27493.244432 eV Total energy + Delta-G solvation = -4192.820182 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.65872 -39.46683 -37.66851 -36.21097 -35.18812 -34.68003 -33.11710 -32.18651 -31.22798 -30.36869 -29.94951 -27.71869 -25.66342 -24.89565 -23.80432 -23.15254 -22.40100 -20.75632 -20.43970 -19.92190 -18.99962 -17.81200 -16.75692 -16.61091 -16.45770 -16.03946 -15.81436 -15.38177 -14.98449 -14.84618 -14.45390 -14.18231 -13.85712 -13.75755 -13.71320 -13.35806 -13.32213 -12.95057 -12.78264 -12.59821 -12.41140 -12.39418 -12.11869 -11.97658 -11.90311 -11.78704 -11.47448 -11.39094 -11.18786 -10.94438 -10.80150 -10.65643 -10.48839 -10.15022 -10.03425 -9.90824 -9.84634 -9.70272 -9.47715 -9.27864 -9.11220 -8.48104 -8.36207 -6.52182 -5.72105 -3.24877 2.43648 2.60502 2.74816 3.28543 3.44353 3.52290 3.56040 4.31832 4.53729 4.56338 4.82411 4.83294 4.90659 4.94549 5.08795 5.12481 5.24442 5.28088 5.37223 5.43798 5.45352 5.50782 5.55224 5.59760 5.63411 5.69779 5.79491 5.88915 5.94303 5.98198 6.00877 6.05470 6.09389 6.20889 6.23460 6.35329 6.43104 6.58262 6.67716 6.78436 6.80128 7.09522 7.20585 7.34010 7.46953 7.65070 7.91299 8.05286 8.14186 8.44568 8.63228 9.25571 9.89563 10.44407 11.31160 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012812 B = 0.002939 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.870414 B = 9523.754280 C =10103.152996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.514 3.486 4 O -0.542 6.542 5 N -0.715 5.715 6 C 0.123 3.877 7 H 0.113 0.887 8 C -0.160 4.160 9 C 0.513 3.487 10 O -0.548 6.548 11 N -0.595 5.595 12 C 0.102 3.898 13 C -0.141 4.141 14 C 0.177 3.823 15 N -0.571 5.571 16 C -0.235 4.235 17 H 0.056 0.944 18 C 0.016 3.984 19 N -0.893 5.893 20 Si 0.896 3.104 21 H -0.278 1.278 22 H -0.294 1.294 23 H -0.289 1.289 24 C 0.146 3.854 25 C 0.059 3.941 26 O -0.544 6.544 27 C -0.133 4.133 28 C 0.112 3.888 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.410 0.590 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.046 0.954 43 H 0.251 0.749 44 H 0.101 0.899 45 H 0.036 0.964 46 H 0.019 0.981 47 H 0.022 0.978 48 H 0.349 0.651 49 H 0.071 0.929 50 H 0.073 0.927 51 H 0.085 0.915 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.350 -7.284 -16.516 19.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.183 4.183 3 C 0.301 3.699 4 O -0.418 6.418 5 N -0.369 5.369 6 C 0.015 3.985 7 H 0.131 0.869 8 C -0.218 4.218 9 C 0.299 3.701 10 O -0.427 6.427 11 N -0.328 5.328 12 C -0.021 4.021 13 C -0.181 4.181 14 C 0.070 3.930 15 N -0.290 5.290 16 C -0.364 4.364 17 H 0.073 0.927 18 C -0.184 4.184 19 N -0.537 5.537 20 Si 0.726 3.274 21 H -0.203 1.203 22 H -0.222 1.222 23 H -0.216 1.216 24 C 0.019 3.981 25 C -0.021 4.021 26 O -0.345 6.345 27 C -0.173 4.173 28 C -0.010 4.010 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.247 0.753 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.119 0.881 45 H 0.054 0.946 46 H 0.037 0.963 47 H 0.040 0.960 48 H 0.192 0.808 49 H 0.090 0.910 50 H 0.091 0.909 51 H 0.103 0.897 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.162 -7.608 -15.877 18.653 hybrid contribution -0.397 0.353 0.562 0.773 sum -6.559 -7.255 -15.315 18.172 Atomic orbital electron populations 1.21528 0.92913 1.01570 1.03430 1.21622 0.98657 0.93494 1.04548 1.20821 0.81684 0.92097 0.75347 1.90704 1.55240 1.46503 1.49391 1.45847 1.07541 1.08013 1.75473 1.20761 0.93982 0.85387 0.98407 0.86921 1.22179 1.03499 1.01914 0.94243 1.20446 0.87526 0.83751 0.78350 1.90654 1.64856 1.32870 1.54272 1.48077 1.16226 1.05606 1.62865 1.22120 0.96285 0.84593 0.99121 1.22462 1.01170 0.99271 0.95184 1.20302 0.92214 0.90794 0.89732 1.43711 1.60769 1.16420 1.08084 1.18776 0.99755 1.34213 0.83684 0.92653 1.25028 0.94678 1.00687 0.97962 1.69998 1.09509 1.51523 1.22663 0.86352 0.80688 0.77003 0.83361 1.20313 1.22187 1.21606 1.20979 0.90319 0.83613 1.03195 1.23099 0.88618 0.98163 0.92235 1.86853 1.36728 1.59886 1.51080 1.22300 1.02595 0.97147 0.95260 1.21801 0.80953 1.02021 0.96273 0.92002 0.92082 0.91871 0.88866 0.88701 0.75327 0.90550 0.91828 0.90869 0.91330 0.90211 0.91142 0.91261 0.93546 0.93897 0.88102 0.94597 0.96289 0.95997 0.80773 0.91022 0.90865 0.89673 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.20 37.15 0.34 -0.76 16 2 C -0.14 -1.12 6.42 -27.89 -0.18 -1.30 16 3 C 0.51 5.95 7.79 -10.99 -0.09 5.87 16 4 O -0.54 -8.16 15.64 5.56 0.09 -8.07 16 5 N -0.71 -8.07 5.00 -54.93 -0.27 -8.35 16 6 C 0.12 1.50 2.13 -69.08 -0.15 1.35 16 7 H 0.11 1.51 6.49 -51.93 -0.34 1.17 16 8 C -0.16 -1.57 9.13 37.16 0.34 -1.23 16 9 C 0.51 7.43 7.05 -10.99 -0.08 7.36 16 10 O -0.55 -9.30 15.24 5.55 0.08 -9.22 16 11 N -0.60 -8.49 2.97 -172.50 -0.51 -9.00 16 12 C 0.10 1.29 5.08 -3.48 -0.02 1.27 16 13 C -0.14 -2.32 5.32 -26.38 -0.14 -2.47 16 14 C 0.18 3.32 2.59 -67.89 -0.18 3.15 16 15 N -0.57 -13.14 2.32 -165.62 -0.38 -13.53 16 16 C -0.23 -6.19 8.02 -15.06 -0.12 -6.31 16 17 H 0.06 1.51 6.89 -52.49 -0.36 1.15 16 18 C 0.02 0.43 4.90 -17.43 -0.09 0.35 16 19 N -0.89 -25.45 11.53 55.49 0.64 -24.81 16 20 Si 0.90 22.40 29.60 -169.99 -5.03 17.37 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 C 0.15 3.25 5.56 -4.05 -0.02 3.22 16 25 C 0.06 1.11 7.39 37.15 0.27 1.38 16 26 O -0.54 -11.03 13.40 -35.23 -0.47 -11.50 16 27 C -0.13 -2.49 5.30 -26.62 -0.14 -2.63 16 28 C 0.11 1.71 6.43 -3.71 -0.02 1.68 16 29 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.41 4.23 7.72 -40.82 -0.32 3.91 16 35 H 0.08 0.67 6.12 -51.93 -0.32 0.35 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.89 4.99 -51.93 -0.26 0.63 16 40 H 0.07 1.36 7.05 -51.93 -0.37 0.99 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.05 0.81 7.87 -51.93 -0.41 0.40 16 43 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.10 2.66 5.56 -51.93 -0.29 2.37 16 45 H 0.04 0.74 8.04 -51.93 -0.42 0.33 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.02 0.38 8.14 -51.92 -0.42 -0.05 16 48 H 0.35 5.10 9.12 45.56 0.42 5.52 16 49 H 0.07 1.56 7.71 -51.93 -0.40 1.16 16 50 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 51 H 0.08 1.38 7.00 -51.93 -0.36 1.01 16 52 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 407.97 15.07 6.15 6.15 Total: -1.00 -33.42 407.97 -8.02 -41.44 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -8.05 Total: 8.58 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: -0.26 Total: 10.94 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.53 Total: -55.68 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.30 Total: -28.79 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.37 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.42 -8.02 -41.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098376614.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.764 kcal (2) G-P(sol) polarization free energy of solvation -33.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds