Wall clock time and date at job start Wed Apr 1 2020 00:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47088 * 2 1 4 4 O 1.21272 * 119.99901 * 359.97438 * 3 2 1 5 5 N 1.34772 * 119.99962 * 179.72459 * 3 2 1 6 6 C 1.46506 * 120.00110 * 180.02562 * 5 3 2 7 7 H 1.09003 * 109.47215 * 34.99585 * 6 5 3 8 8 C 1.53009 * 109.46914 * 275.00053 * 6 5 3 9 9 C 1.50697 * 109.47597 * 154.99981 * 6 5 3 10 10 O 1.21285 * 119.99555 * 9.20092 * 9 6 5 11 11 N 1.34769 * 120.00277 * 189.20109 * 9 6 5 12 12 C 1.46933 * 120.62901 * 2.73917 * 11 9 6 13 13 C 1.53634 * 108.53690 * 126.37329 * 12 11 9 14 14 C 1.53038 * 109.24450 * 54.85682 * 13 12 11 15 15 N 1.46499 * 109.46025 * 178.48903 * 14 13 12 16 16 C 1.36929 * 119.99778 * 60.06637 * 15 14 13 17 17 H 1.07997 * 120.00671 * 322.91301 * 16 15 14 18 18 C 1.38814 * 119.99483 * 142.90677 * 16 15 14 19 19 N 1.31619 * 120.00301 * 338.54278 * 18 16 15 20 20 Si 1.86803 * 119.99891 * 158.54495 * 18 16 15 21 21 H 1.48503 * 109.47238 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47311 * 120.00048 * 20 18 16 23 23 H 1.48499 * 109.47406 * 239.99991 * 20 18 16 24 24 C 1.46503 * 119.99923 * 240.07431 * 15 14 13 25 25 C 1.52987 * 109.47497 * 84.39498 * 24 15 14 26 26 O 1.42898 * 109.47230 * 65.00061 * 25 24 15 27 27 C 1.53037 * 109.53902 * 298.51380 * 14 13 12 28 28 C 1.46924 * 120.63481 * 183.02625 * 11 9 6 29 29 H 1.08996 * 109.47107 * 60.00237 * 1 2 3 30 30 H 1.09003 * 109.46864 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47219 * 299.99738 * 1 2 3 32 32 H 1.09005 * 109.47190 * 240.00315 * 2 1 3 33 33 H 1.08998 * 109.47747 * 120.00149 * 2 1 3 34 34 H 0.97003 * 120.00718 * 0.02562 * 5 3 2 35 35 H 1.08994 * 109.47210 * 182.60915 * 8 6 5 36 36 H 1.09000 * 109.46746 * 302.60759 * 8 6 5 37 37 H 1.09002 * 109.46953 * 62.61054 * 8 6 5 38 38 H 1.08999 * 109.58725 * 246.20288 * 12 11 9 39 39 H 1.08999 * 109.58539 * 6.63709 * 12 11 9 40 40 H 1.08999 * 109.63262 * 294.86502 * 13 12 11 41 41 H 1.08994 * 109.42805 * 174.73019 * 13 12 11 42 42 H 1.09004 * 109.45309 * 58.52932 * 14 13 12 43 43 H 0.96999 * 120.00023 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.46590 * 204.39920 * 24 15 14 45 45 H 1.09005 * 109.46559 * 324.39474 * 24 15 14 46 46 H 1.08999 * 109.47109 * 185.00229 * 25 24 15 47 47 H 1.09008 * 109.47263 * 304.99999 * 25 24 15 48 48 H 0.96702 * 114.00070 * 180.02562 * 26 25 24 49 49 H 1.09007 * 109.49356 * 301.40912 * 27 14 13 50 50 H 1.08996 * 109.52498 * 181.33178 * 27 14 13 51 51 H 1.09006 * 109.58167 * 353.37406 * 28 11 9 52 52 H 1.08996 * 109.58748 * 113.64874 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3573 1.6671 0.0056 6 6 3.8457 3.0484 0.0062 7 1 3.1705 3.6723 0.5918 8 6 3.9035 3.5694 -1.4313 9 6 5.2245 3.0935 0.6127 10 8 5.8157 2.0619 0.8520 11 7 5.8005 4.2801 0.8892 12 6 5.0736 5.5365 0.6608 13 6 5.0884 6.3529 1.9621 14 6 6.5355 6.5394 2.4241 15 7 6.5575 7.3482 3.6454 16 6 5.9066 6.9108 4.7680 17 1 4.9641 6.3912 4.6779 18 6 6.4583 7.1352 6.0218 19 7 7.7482 7.3682 6.1412 20 14 5.3701 7.1063 7.5399 21 1 3.9683 6.8243 7.1388 22 1 5.8418 6.0466 8.4671 23 1 5.4350 8.4245 8.2206 24 6 7.2757 8.6249 3.6657 25 6 6.3716 9.7276 3.1114 26 8 5.2532 9.9092 3.9821 27 6 7.1629 5.1724 2.7064 28 6 7.1695 4.3424 1.4189 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.9877 0.9299 0.0093 35 1 4.3104 4.5805 -1.4351 36 1 4.5423 2.9184 -2.0282 37 1 2.8990 3.5804 -1.8545 38 1 5.5611 6.1014 -0.1338 39 1 4.0443 5.3167 0.3773 40 1 4.5259 5.8249 2.7321 41 1 4.6349 7.3278 1.7837 42 1 7.1034 7.0454 1.6434 43 1 8.1338 7.5246 7.0174 44 1 7.5575 8.8669 4.6904 45 1 8.1725 8.5470 3.0510 46 1 6.9341 10.6587 3.0434 47 1 6.0180 9.4435 2.1201 48 1 4.6359 10.5946 3.6917 49 1 6.5808 4.6556 3.4694 50 1 8.1858 5.3067 3.0580 51 1 7.5236 3.3345 1.6356 52 1 7.8248 4.8096 0.6838 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098376614.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:38 Heat of formation + Delta-G solvation = -127.512475 kcal Electronic energy + Delta-G solvation = -31687.161958 eV Core-core repulsion = 27493.244432 eV Total energy + Delta-G solvation = -4193.917525 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.74726 -40.51073 -39.11462 -37.67858 -36.28133 -36.16385 -34.01271 -33.70269 -32.55109 -31.88403 -31.04287 -29.39594 -26.89665 -26.08904 -25.11798 -24.43190 -23.62531 -22.23688 -21.54923 -21.26788 -20.24519 -18.86694 -18.17158 -18.07078 -17.77432 -17.25889 -16.77542 -16.73704 -16.38026 -16.16232 -15.95274 -15.60339 -15.20326 -14.96393 -14.80773 -14.79270 -14.39645 -14.27428 -14.07697 -13.80184 -13.60137 -13.42864 -13.19531 -13.10946 -13.03706 -12.93661 -12.78890 -12.68657 -12.62994 -12.56246 -12.34643 -12.10762 -12.02358 -11.83131 -11.63056 -11.49852 -11.13885 -10.99026 -10.86517 -10.60214 -10.39396 -10.23885 -9.68961 -8.45730 -7.76379 -5.30899 1.39960 1.40516 1.44845 1.52541 1.60074 1.75682 2.31272 2.54419 3.25962 3.34465 3.56447 3.75206 3.85485 3.92832 4.00518 4.06140 4.14178 4.21334 4.22814 4.28126 4.35030 4.44868 4.58887 4.60683 4.62477 4.70781 4.72361 4.77722 4.79098 4.83123 4.89134 4.93462 5.00191 5.06931 5.09644 5.12139 5.15418 5.20022 5.27844 5.38754 5.44534 5.61288 5.63981 5.75442 5.84360 6.31934 6.47450 6.54521 6.97386 7.18948 7.22876 7.29719 7.98533 8.45809 9.21223 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012812 B = 0.002939 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.870414 B = 9523.754280 C =10103.152996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.138 4.138 3 C 0.509 3.491 4 O -0.581 6.581 5 N -0.712 5.712 6 C 0.126 3.874 7 H 0.100 0.900 8 C -0.151 4.151 9 C 0.511 3.489 10 O -0.576 6.576 11 N -0.597 5.597 12 C 0.109 3.891 13 C -0.131 4.131 14 C 0.173 3.827 15 N -0.584 5.584 16 C -0.219 4.219 17 H 0.040 0.960 18 C -0.034 4.034 19 N -0.919 5.919 20 Si 0.939 3.061 21 H -0.277 1.277 22 H -0.297 1.297 23 H -0.293 1.293 24 C 0.139 3.861 25 C 0.068 3.932 26 O -0.578 6.578 27 C -0.122 4.122 28 C 0.124 3.876 29 H 0.051 0.949 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.122 0.878 33 H 0.110 0.890 34 H 0.416 0.584 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.033 0.967 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.245 0.755 44 H 0.058 0.942 45 H 0.048 0.952 46 H 0.044 0.956 47 H 0.045 0.955 48 H 0.375 0.625 49 H 0.028 0.972 50 H 0.052 0.948 51 H 0.073 0.927 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.977 -7.395 -19.579 22.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.177 4.177 3 C 0.298 3.702 4 O -0.461 6.461 5 N -0.367 5.367 6 C 0.017 3.983 7 H 0.118 0.882 8 C -0.209 4.209 9 C 0.299 3.701 10 O -0.456 6.456 11 N -0.329 5.329 12 C -0.013 4.013 13 C -0.171 4.171 14 C 0.067 3.933 15 N -0.304 5.304 16 C -0.350 4.350 17 H 0.058 0.942 18 C -0.230 4.230 19 N -0.565 5.565 20 Si 0.770 3.230 21 H -0.202 1.202 22 H -0.225 1.225 23 H -0.221 1.221 24 C 0.013 3.987 25 C -0.011 4.011 26 O -0.383 6.383 27 C -0.162 4.162 28 C 0.001 3.999 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.140 0.860 33 H 0.128 0.872 34 H 0.253 0.747 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.124 0.876 39 H 0.117 0.883 40 H 0.052 0.948 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.054 0.946 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.062 0.938 47 H 0.064 0.936 48 H 0.221 0.779 49 H 0.047 0.953 50 H 0.071 0.929 51 H 0.092 0.908 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.806 -7.712 -18.974 21.583 hybrid contribution -0.213 0.385 1.494 1.558 sum -7.019 -7.327 -17.479 20.211 Atomic orbital electron populations 1.21534 0.93187 1.02702 1.01973 1.21702 0.98310 0.91146 1.06590 1.21528 0.81248 0.93296 0.74171 1.90684 1.56082 1.48026 1.51317 1.45905 1.07760 1.07897 1.75089 1.20754 0.91903 0.86007 0.99649 0.88190 1.22136 1.03748 1.02809 0.92239 1.20850 0.88088 0.83281 0.77841 1.90642 1.65718 1.33813 1.55419 1.48133 1.15903 1.06307 1.62540 1.22219 0.97856 0.83537 0.97693 1.22284 0.98704 0.99894 0.96171 1.20532 0.94081 0.90118 0.88618 1.43886 1.60485 1.17546 1.08442 1.18766 0.99003 1.32256 0.84988 0.94248 1.25504 0.95470 1.02182 0.99836 1.70096 1.10383 1.53673 1.22387 0.85656 0.79572 0.76436 0.81370 1.20221 1.22496 1.22052 1.20950 0.91797 0.84620 1.01320 1.22888 0.88021 0.97824 0.92386 1.86772 1.37802 1.61393 1.52346 1.22116 1.00427 0.97620 0.96056 1.21607 0.82285 1.00864 0.95170 0.92956 0.89599 0.93867 0.86003 0.87223 0.74655 0.88985 0.91050 0.90976 0.87638 0.88318 0.94796 0.90592 0.90871 0.94575 0.92344 0.93348 0.93763 0.93638 0.77884 0.95304 0.92946 0.90827 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.20 71.98 0.66 -1.35 16 2 C -0.14 -1.87 6.42 29.85 0.19 -1.68 16 3 C 0.51 11.20 7.79 87.66 0.68 11.89 16 4 O -0.58 -17.29 15.64 -3.00 -0.05 -17.34 16 5 N -0.71 -15.11 5.00 -446.08 -2.23 -17.34 16 6 C 0.13 2.85 2.13 44.25 0.09 2.95 16 7 H 0.10 2.57 6.49 -2.39 -0.02 2.56 16 8 C -0.15 -2.53 9.13 71.99 0.66 -1.87 16 9 C 0.51 14.06 7.05 87.66 0.62 14.68 16 10 O -0.58 -19.02 15.24 -3.05 -0.05 -19.07 16 11 N -0.60 -15.80 2.97 -818.05 -2.43 -18.23 16 12 C 0.11 2.41 5.08 86.51 0.44 2.85 16 13 C -0.13 -4.10 5.32 30.82 0.16 -3.94 16 14 C 0.17 6.28 2.59 45.02 0.12 6.39 16 15 N -0.58 -26.90 2.32 -677.91 -1.57 -28.48 16 16 C -0.22 -11.85 8.02 84.04 0.67 -11.18 16 17 H 0.04 2.24 6.89 -2.91 -0.02 2.22 16 18 C -0.03 -1.92 4.90 84.86 0.42 -1.51 16 19 N -0.92 -54.21 11.53 21.65 0.25 -53.96 16 20 Si 0.94 47.38 29.60 68.60 2.03 49.41 16 21 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 22 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 23 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 24 C 0.14 6.14 5.56 86.37 0.48 6.62 16 25 C 0.07 2.41 7.39 71.98 0.53 2.94 16 26 O -0.58 -22.57 13.40 -148.98 -2.00 -24.56 16 27 C -0.12 -4.60 5.30 30.67 0.16 -4.44 16 28 C 0.12 3.59 6.43 86.36 0.56 4.14 16 29 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 30 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.04 0.80 8.10 -2.39 -0.02 0.78 16 32 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.42 7.92 7.72 -92.71 -0.72 7.21 16 35 H 0.09 1.24 6.12 -2.39 -0.01 1.23 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.10 1.89 4.99 -2.39 -0.01 1.87 16 40 H 0.03 1.30 7.05 -2.39 -0.02 1.29 16 41 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.07 2.30 7.87 -2.38 -0.02 2.28 16 43 H 0.24 14.19 8.31 -92.71 -0.77 13.41 16 44 H 0.06 3.14 5.56 -2.39 -0.01 3.12 16 45 H 0.05 1.95 8.04 -2.38 -0.02 1.93 16 46 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 48 H 0.37 10.12 9.12 -74.06 -0.68 9.44 16 49 H 0.03 1.30 7.71 -2.38 -0.02 1.28 16 50 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 51 H 0.07 2.34 7.00 -2.38 -0.02 2.33 16 52 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -76.44 407.97 -0.05 -76.49 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: -0.46 Total: 26.57 kcal Atomic # 6 Polarization: 20.06 SS G_CDS: 6.45 Total: 26.51 kcal Atomic # 7 Polarization: -112.03 SS G_CDS: -5.98 Total: -118.01 kcal Atomic # 8 Polarization: -58.88 SS G_CDS: -2.09 Total: -60.97 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -76.44 -0.05 -76.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098376614.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.020 kcal (2) G-P(sol) polarization free energy of solvation -76.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds