Wall clock time and date at job start Wed Apr 1 2020 00:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47469 * 2 1 4 4 O 1.21284 * 119.99937 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00026 * 179.97438 * 3 2 1 6 6 C 1.46501 * 119.99858 * 180.02562 * 5 3 2 7 7 H 1.09001 * 109.57653 * 35.15856 * 6 5 3 8 8 C 1.53120 * 109.52272 * 274.99734 * 6 5 3 9 9 C 1.53041 * 109.27975 * 182.44362 * 8 6 5 10 10 N 1.46839 * 109.52384 * 59.17809 * 9 8 6 11 11 C 1.46896 * 111.00054 * 174.16242 * 10 9 8 12 12 C 1.50701 * 109.47304 * 66.04745 * 11 10 9 13 13 O 1.21284 * 119.99629 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00191 * 179.97438 * 12 11 10 15 15 C 1.46501 * 119.99949 * 0.02562 * 14 12 11 16 16 C 1.52998 * 109.46510 * 269.99484 * 15 14 12 17 17 C 1.46500 * 119.99606 * 179.97438 * 14 12 11 18 18 C 1.50694 * 109.47517 * 270.00272 * 17 14 12 19 19 H 1.08002 * 120.00179 * 0.02562 * 18 17 14 20 20 C 1.37879 * 120.00472 * 180.02562 * 18 17 14 21 21 N 1.31514 * 119.99350 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00608 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47326 * 270.00340 * 22 20 18 24 24 H 1.48506 * 109.46545 * 30.00090 * 22 20 18 25 25 H 1.48498 * 109.47210 * 149.99801 * 22 20 18 26 26 C 1.46845 * 111.20082 * 298.25806 * 10 9 8 27 27 C 1.53041 * 109.52144 * 61.74371 * 26 10 9 28 28 H 1.09000 * 109.50556 * 60.76419 * 27 26 10 29 29 O 1.42898 * 109.50337 * 180.88003 * 27 26 10 30 30 H 1.09006 * 109.46899 * 60.00119 * 1 2 3 31 31 H 1.08995 * 109.47303 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46939 * 300.00280 * 1 2 3 33 33 H 1.09006 * 109.47055 * 240.00282 * 2 1 3 34 34 H 1.08999 * 109.46966 * 120.00276 * 2 1 3 35 35 H 0.97001 * 120.00351 * 0.02562 * 5 3 2 36 36 H 1.09002 * 109.50206 * 62.50028 * 8 6 5 37 37 H 1.09003 * 109.50788 * 302.38178 * 8 6 5 38 38 H 1.09001 * 109.45818 * 299.16667 * 9 8 6 39 39 H 1.09001 * 109.46039 * 179.19711 * 9 8 6 40 40 H 1.09003 * 109.47420 * 306.04570 * 11 10 9 41 41 H 1.09000 * 109.47755 * 186.04851 * 11 10 9 42 42 H 1.08994 * 109.47217 * 29.99484 * 15 14 12 43 43 H 1.08996 * 109.46963 * 149.99579 * 15 14 12 44 44 H 1.09004 * 109.46532 * 179.97438 * 16 15 14 45 45 H 1.08994 * 109.47380 * 299.99900 * 16 15 14 46 46 H 1.08996 * 109.47097 * 60.00813 * 16 15 14 47 47 H 1.09005 * 109.46643 * 150.00803 * 17 14 12 48 48 H 1.08998 * 109.47481 * 30.00637 * 17 14 12 49 49 H 0.97005 * 119.99661 * 179.97438 * 21 20 18 50 50 H 1.08999 * 109.46665 * 181.75643 * 26 10 9 51 51 H 1.08999 * 109.46851 * 301.73061 * 26 10 9 52 52 H 0.96705 * 114.00308 * 299.80117 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 0.0005 5 7 3.3574 1.6670 0.0005 6 6 3.8458 3.0482 0.0011 7 1 3.1758 3.6722 0.5924 8 6 3.8984 3.5729 -1.4364 9 6 4.4665 4.9940 -1.4352 10 7 5.8129 4.9837 -0.8493 11 6 6.4442 6.3057 -0.9575 12 6 5.6901 7.2937 -0.1054 13 8 4.7217 6.9323 0.5291 14 7 6.0917 8.5790 -0.0484 15 6 7.2611 9.0157 -0.8153 16 6 8.5205 8.8518 0.0378 17 6 5.3582 9.5396 0.7795 18 6 4.2679 10.1799 -0.0403 19 1 4.1344 9.8992 -1.0746 20 6 3.4408 11.1243 0.5299 21 7 3.6031 11.4657 1.7895 22 14 2.0898 11.9186 -0.4866 23 1 2.6186 13.1403 -1.1444 24 1 1.6219 10.9620 -1.5217 25 1 0.9548 12.2846 0.3983 26 6 5.7813 4.5283 0.5464 27 6 5.2525 3.0933 0.6042 28 1 5.9133 2.4387 0.0359 29 8 5.2026 2.6577 1.9643 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 3.9878 0.9297 0.0005 36 1 2.8928 3.5834 -1.8570 37 1 4.5379 2.9260 -2.0369 38 1 3.8190 5.6433 -0.8459 39 1 4.5185 5.3652 -2.4587 40 1 6.4253 6.6335 -1.9969 41 1 7.4771 6.2443 -0.6147 42 1 7.3514 8.4097 -1.7168 43 1 7.1435 10.0634 -1.0921 44 1 9.3907 9.1763 -0.5330 45 1 8.4302 9.4578 0.9392 46 1 8.6381 7.8041 0.3144 47 1 6.0431 10.3085 1.1370 48 1 4.9162 9.0223 1.6311 49 1 3.0214 12.1304 2.1906 50 1 6.7884 4.5612 0.9621 51 1 5.1277 5.1798 1.1264 52 1 6.0608 2.6608 2.4101 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099613887.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:20 Heat of formation + Delta-G solvation = -118.739219 kcal Electronic energy + Delta-G solvation = -31599.370467 eV Core-core repulsion = 27405.833378 eV Total energy + Delta-G solvation = -4193.537089 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.45164 -39.57980 -38.22057 -36.20172 -35.27248 -34.64425 -33.01670 -32.81816 -31.40646 -30.14147 -29.68443 -28.04438 -26.31694 -24.64739 -23.20107 -23.11992 -22.82763 -21.87692 -20.44095 -19.90296 -18.45429 -17.41292 -17.26831 -16.59139 -16.54410 -16.34721 -15.72197 -15.70401 -15.30832 -14.79011 -14.56757 -14.30173 -14.02175 -13.89561 -13.65352 -13.56478 -13.36150 -13.00779 -12.87104 -12.51456 -12.47348 -12.33408 -12.14525 -12.00665 -11.91392 -11.70737 -11.39788 -11.34579 -11.24862 -11.16005 -10.96712 -10.87210 -10.71986 -10.57269 -10.49450 -10.16922 -10.09552 -9.75133 -9.69371 -9.60188 -9.06062 -8.44862 -7.85724 -7.68048 -6.05831 -4.10682 2.64293 3.10156 3.27879 3.29833 3.37081 3.41769 3.78664 3.90179 4.17052 4.44033 4.60133 4.71752 4.87908 4.89806 4.97687 5.02936 5.04643 5.19738 5.27956 5.29858 5.32300 5.34383 5.39019 5.53556 5.58129 5.59777 5.62151 5.71017 5.72896 5.75376 5.90261 5.98260 6.03667 6.04930 6.06348 6.18380 6.30400 6.38773 6.42840 6.49862 6.91066 7.03819 7.06250 7.41673 7.46698 7.51053 7.54193 7.90081 8.21437 8.23529 8.36706 8.86773 9.02807 9.54671 11.02286 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010965 B = 0.003085 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.905942 B = 9072.953752 C =10747.416687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.508 3.492 4 O -0.537 6.537 5 N -0.720 5.720 6 C 0.153 3.847 7 H 0.096 0.904 8 C -0.117 4.117 9 C 0.039 3.961 10 N -0.511 5.511 11 C 0.033 3.967 12 C 0.472 3.528 13 O -0.538 6.538 14 N -0.594 5.594 15 C 0.105 3.895 16 C -0.168 4.168 17 C 0.246 3.754 18 C -0.526 4.526 19 H 0.056 0.944 20 C 0.061 3.939 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.280 1.280 24 H -0.274 1.274 25 H -0.285 1.285 26 C 0.002 3.998 27 C 0.108 3.892 28 H 0.062 0.938 29 O -0.561 6.561 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.398 0.602 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.050 0.950 47 H 0.030 0.970 48 H 0.042 0.958 49 H 0.263 0.737 50 H 0.070 0.930 51 H 0.094 0.906 52 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.678 -21.274 -6.023 23.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.294 3.706 4 O -0.413 6.413 5 N -0.371 5.371 6 C 0.048 3.952 7 H 0.114 0.886 8 C -0.156 4.156 9 C -0.089 4.089 10 N -0.236 5.236 11 C -0.098 4.098 12 C 0.258 3.742 13 O -0.417 6.417 14 N -0.325 5.325 15 C -0.019 4.019 16 C -0.227 4.227 17 C 0.126 3.874 18 C -0.565 4.565 19 H 0.074 0.926 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.725 3.275 23 H -0.206 1.206 24 H -0.199 1.199 25 H -0.210 1.210 26 C -0.126 4.126 27 C 0.048 3.952 28 H 0.079 0.921 29 O -0.365 6.365 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.231 0.769 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.069 0.931 47 H 0.048 0.952 48 H 0.060 0.940 49 H 0.073 0.927 50 H 0.089 0.911 51 H 0.112 0.888 52 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 7.145 -21.068 -5.927 23.023 hybrid contribution -0.071 0.983 0.028 0.986 sum 7.074 -20.085 -5.899 22.097 Atomic orbital electron populations 1.21527 0.93081 1.01378 1.03530 1.21621 0.98672 0.93942 1.04073 1.20782 0.82207 0.91817 0.75752 1.90744 1.55200 1.46489 1.48884 1.45966 1.07055 1.08481 1.75594 1.21005 0.94301 0.83217 0.96630 0.88571 1.21874 1.01627 0.96530 0.95539 1.22281 0.89752 0.96651 1.00265 1.62437 1.20795 1.23044 1.17279 1.22324 0.98960 0.87587 1.00970 1.21588 0.85439 0.83739 0.83408 1.90583 1.27739 1.77570 1.45778 1.48419 1.28456 1.09342 1.46329 1.21429 0.85137 1.01686 0.93669 1.22210 0.97581 1.01649 1.01222 1.19259 0.90997 0.86464 0.90666 1.21396 1.15344 1.21995 0.97724 0.92584 1.24933 0.97454 0.96687 0.94995 1.69931 1.39221 1.32391 1.11789 0.86506 0.81559 0.79384 0.80056 1.20646 1.19875 1.21048 1.23096 1.02212 0.96289 0.91043 1.21950 0.95745 0.94767 0.82731 0.92051 1.86571 1.35965 1.88861 1.25114 0.91968 0.92239 0.91904 0.89151 0.89063 0.76871 0.90470 0.91259 0.90890 0.90690 0.88199 0.88361 0.91649 0.89935 0.92089 0.92083 0.93127 0.95166 0.94014 0.92709 0.91109 0.88803 0.77540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.20 37.16 0.34 -0.90 16 2 C -0.14 -1.18 6.42 -27.88 -0.18 -1.36 16 3 C 0.51 6.45 7.80 -10.99 -0.09 6.36 16 4 O -0.54 -9.47 15.65 5.55 0.09 -9.38 16 5 N -0.72 -8.03 5.00 -53.68 -0.27 -8.30 16 6 C 0.15 2.10 2.20 -67.81 -0.15 1.95 16 7 H 0.10 1.75 7.59 -51.93 -0.39 1.36 16 8 C -0.12 -1.53 5.67 -26.65 -0.15 -1.68 16 9 C 0.04 0.58 5.09 -3.84 -0.02 0.56 16 10 N -0.51 -7.02 4.86 -236.12 -1.15 -8.17 16 11 C 0.03 0.46 4.41 -4.98 -0.02 0.44 16 12 C 0.47 9.20 7.09 -10.98 -0.08 9.12 16 13 O -0.54 -12.69 11.20 5.55 0.06 -12.63 16 14 N -0.59 -12.01 2.46 -175.07 -0.43 -12.44 16 15 C 0.11 1.59 5.93 -4.04 -0.02 1.56 16 16 C -0.17 -2.11 10.24 37.16 0.38 -1.73 16 17 C 0.25 6.34 5.16 -5.20 -0.03 6.31 16 18 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 19 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 22 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 26 C 0.00 0.03 4.60 -3.83 -0.02 0.01 16 27 C 0.11 1.28 3.14 -26.65 -0.08 1.20 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 O -0.56 -6.57 13.23 -35.23 -0.47 -7.03 16 30 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.40 3.18 8.60 -40.82 -0.35 2.83 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 1.41 6.00 -51.93 -0.31 1.10 16 39 H 0.07 1.03 8.06 -51.93 -0.42 0.62 16 40 H 0.10 1.25 7.32 -51.93 -0.38 0.87 16 41 H 0.10 1.15 7.18 -51.93 -0.37 0.78 16 42 H 0.07 0.80 6.44 -51.93 -0.33 0.47 16 43 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.05 0.59 7.22 -51.93 -0.37 0.21 16 47 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 48 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 49 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 50 H 0.07 0.86 8.12 -51.93 -0.42 0.43 16 51 H 0.09 1.74 5.36 -51.93 -0.28 1.46 16 52 H 0.38 2.80 9.08 45.56 0.41 3.21 16 LS Contribution 410.33 15.07 6.18 6.18 Total: -1.00 -36.30 410.33 -9.01 -45.32 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -8.22 Total: 7.04 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -0.53 Total: 8.32 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: -1.11 Total: -54.96 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.32 Total: -29.04 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.30 -9.01 -45.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099613887.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.424 kcal (2) G-P(sol) polarization free energy of solvation -36.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds