Wall clock time and date at job start Wed Apr 1 2020 00:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.46622 * 2 1 4 4 O 1.21280 * 120.00158 * 359.97438 * 3 2 1 5 5 N 1.34772 * 119.99991 * 180.02562 * 3 2 1 6 6 C 1.46502 * 120.00236 * 179.97438 * 5 3 2 7 7 H 1.09000 * 109.57160 * 35.15844 * 6 5 3 8 8 C 1.53123 * 109.52324 * 274.99808 * 6 5 3 9 9 C 1.53036 * 109.27788 * 297.74862 * 8 6 5 10 10 N 1.46842 * 109.52190 * 300.81892 * 9 8 6 11 11 C 1.46907 * 110.99676 * 185.84074 * 10 9 8 12 12 C 1.50694 * 109.47035 * 66.04843 * 11 10 9 13 13 O 1.21285 * 120.00072 * 359.97438 * 12 11 10 14 14 N 1.34780 * 120.00016 * 179.97438 * 12 11 10 15 15 C 1.46495 * 119.99960 * 359.97438 * 14 12 11 16 16 C 1.53005 * 109.47174 * 90.00096 * 15 14 12 17 17 C 1.46503 * 120.00126 * 179.97438 * 14 12 11 18 18 C 1.50701 * 109.47069 * 89.99747 * 17 14 12 19 19 H 1.08004 * 120.00194 * 359.97438 * 18 17 14 20 20 C 1.37879 * 120.00040 * 179.97438 * 18 17 14 21 21 N 1.31515 * 119.99843 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99705 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47089 * 90.00110 * 22 20 18 24 24 H 1.48498 * 109.46934 * 210.00000 * 22 20 18 25 25 H 1.48502 * 109.47340 * 330.00212 * 22 20 18 26 26 C 1.46848 * 111.20069 * 61.74451 * 10 9 8 27 27 C 1.53032 * 109.52348 * 298.25721 * 26 10 9 28 28 H 1.08998 * 109.50355 * 299.19707 * 27 26 10 29 29 O 1.42898 * 109.50640 * 179.11704 * 27 26 10 30 30 H 1.09007 * 109.46576 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47247 * 300.00123 * 1 2 3 32 32 H 1.08998 * 109.47415 * 60.00873 * 1 2 3 33 33 H 1.08993 * 109.47247 * 239.99877 * 2 1 3 34 34 H 1.08998 * 109.47415 * 119.99127 * 2 1 3 35 35 H 0.96998 * 119.99816 * 359.97438 * 5 3 2 36 36 H 1.09000 * 109.50367 * 177.80407 * 8 6 5 37 37 H 1.09006 * 109.50264 * 57.68746 * 8 6 5 38 38 H 1.09002 * 109.46126 * 60.83950 * 9 8 6 39 39 H 1.09000 * 109.45809 * 180.80452 * 9 8 6 40 40 H 1.09004 * 109.46587 * 186.04463 * 11 10 9 41 41 H 1.08994 * 109.47194 * 306.04470 * 11 10 9 42 42 H 1.08997 * 109.47916 * 210.00058 * 15 14 12 43 43 H 1.09006 * 109.47452 * 330.00751 * 15 14 12 44 44 H 1.08995 * 109.47605 * 180.02562 * 16 15 14 45 45 H 1.09005 * 109.47101 * 300.00277 * 16 15 14 46 46 H 1.09001 * 109.47082 * 59.99993 * 16 15 14 47 47 H 1.08998 * 109.46776 * 209.99682 * 17 14 12 48 48 H 1.08994 * 109.46819 * 330.00076 * 17 14 12 49 49 H 0.97005 * 119.99341 * 179.97438 * 21 20 18 50 50 H 1.09003 * 109.46014 * 58.27448 * 26 10 9 51 51 H 1.08995 * 109.46374 * 178.23478 * 26 10 9 52 52 H 0.96698 * 113.99767 * 59.99737 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2441 2.3427 -0.0005 5 7 3.3572 1.6673 -0.0005 6 6 3.8455 3.0485 -0.0011 7 1 3.1758 3.6728 0.5904 8 6 3.8970 3.5725 -1.4390 9 6 4.8849 2.7297 -2.2487 10 7 6.2157 2.8067 -1.6328 11 6 7.2189 2.1228 -2.4598 12 6 7.3838 2.8614 -3.7629 13 8 6.7296 3.8591 -3.9814 14 7 8.2582 2.4134 -4.6855 15 6 9.0487 1.2088 -4.4214 16 6 8.2864 -0.0209 -4.9193 17 6 8.4180 3.1312 -5.9526 18 6 9.4947 4.1754 -5.8061 19 1 10.0083 4.2930 -4.8632 20 6 9.8242 4.9807 -6.8756 21 7 10.7642 5.8916 -6.7478 22 14 8.9355 4.7779 -8.5061 23 1 7.7397 5.6580 -8.5309 24 1 9.8478 5.1510 -9.6168 25 1 8.5125 3.3635 -8.6668 26 6 6.2012 2.2653 -0.2678 27 6 5.2526 3.0941 0.6011 28 1 5.6004 4.1265 0.6369 29 8 5.2231 2.5545 1.9240 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 3.9876 0.9301 -0.0005 36 1 4.2231 4.6126 -1.4358 37 1 2.9060 3.5026 -1.8875 38 1 4.5507 1.6923 -2.2630 39 1 4.9346 3.1092 -3.2693 40 1 8.1720 2.1013 -1.9312 41 1 6.8910 1.1027 -2.6593 42 1 10.0038 1.2794 -4.9418 43 1 9.2249 1.1175 -3.3495 44 1 8.8744 -0.9173 -4.7224 45 1 7.3313 -0.0917 -4.3988 46 1 8.1102 0.0703 -5.9911 47 1 8.6988 2.4273 -6.7360 48 1 7.4775 3.6140 -6.2179 49 1 10.9962 6.4579 -7.5005 50 1 5.8609 1.2300 -0.2914 51 1 7.2069 2.3073 0.1503 52 1 6.0832 2.5492 2.3659 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099613888.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:24 Heat of formation + Delta-G solvation = -112.432025 kcal Electronic energy + Delta-G solvation = -31492.554606 eV Core-core repulsion = 27299.291018 eV Total energy + Delta-G solvation = -4193.263588 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.68282 -39.47407 -38.53759 -36.37812 -35.37202 -34.71647 -33.13239 -32.74142 -31.47339 -30.43517 -29.86516 -28.52083 -26.73528 -24.79910 -23.38087 -23.21472 -23.02796 -21.79477 -20.86544 -19.37098 -18.46127 -17.61525 -17.48056 -16.94473 -16.73213 -16.13696 -15.97283 -15.81799 -15.25153 -15.21522 -14.74712 -14.51649 -14.36021 -13.87038 -13.77412 -13.55031 -13.50925 -13.14986 -12.94980 -12.84362 -12.65469 -12.59527 -12.36941 -12.24722 -12.01956 -11.88299 -11.72023 -11.52947 -11.46573 -11.43961 -11.04163 -11.01122 -10.75628 -10.64779 -10.52725 -10.32633 -10.16164 -9.95550 -9.54724 -9.25204 -8.98486 -8.59896 -8.32432 -7.73950 -6.09656 -4.08279 2.50184 2.97940 3.27009 3.28350 3.33146 3.35222 3.39774 3.81442 4.06684 4.38366 4.45699 4.51532 4.56804 4.78012 4.79877 4.85348 4.90253 5.05248 5.11209 5.17578 5.19512 5.24040 5.25490 5.30749 5.41739 5.44960 5.49269 5.50588 5.55271 5.62923 5.64927 5.73666 5.76704 5.89037 5.94434 6.04658 6.08583 6.18997 6.31390 6.35209 6.64158 6.83833 6.93462 6.96832 7.31103 7.31413 7.32773 7.59955 8.07667 8.22470 8.45912 8.92223 8.98236 9.50677 11.03754 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015457 B = 0.002582 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.096439 B =10840.775154 C =11008.292713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.145 4.145 3 C 0.511 3.489 4 O -0.542 6.542 5 N -0.717 5.717 6 C 0.154 3.846 7 H 0.094 0.906 8 C -0.123 4.123 9 C 0.052 3.948 10 N -0.514 5.514 11 C 0.040 3.960 12 C 0.509 3.491 13 O -0.521 6.521 14 N -0.594 5.594 15 C 0.106 3.894 16 C -0.169 4.169 17 C 0.218 3.782 18 C -0.527 4.527 19 H 0.074 0.926 20 C 0.072 3.928 21 N -0.897 5.897 22 Si 0.876 3.124 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.267 1.267 26 C 0.026 3.974 27 C 0.101 3.899 28 H 0.083 0.917 29 O -0.562 6.562 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.397 0.603 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.026 0.974 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.057 0.943 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.048 0.952 46 H 0.059 0.941 47 H 0.028 0.972 48 H 0.035 0.965 49 H 0.264 0.736 50 H 0.036 0.964 51 H 0.081 0.919 52 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.368 -16.635 15.267 25.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.185 4.185 3 C 0.298 3.702 4 O -0.419 6.419 5 N -0.369 5.369 6 C 0.049 3.951 7 H 0.112 0.888 8 C -0.161 4.161 9 C -0.075 4.075 10 N -0.240 5.240 11 C -0.091 4.091 12 C 0.294 3.706 13 O -0.396 6.396 14 N -0.327 5.327 15 C -0.018 4.018 16 C -0.228 4.228 17 C 0.097 3.903 18 C -0.566 4.566 19 H 0.092 0.908 20 C -0.130 4.130 21 N -0.536 5.536 22 Si 0.703 3.297 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.192 1.192 26 C -0.103 4.103 27 C 0.041 3.959 28 H 0.101 0.899 29 O -0.367 6.367 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.232 0.768 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.044 0.956 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.075 0.925 42 H 0.104 0.896 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.046 0.954 48 H 0.053 0.947 49 H 0.074 0.926 50 H 0.054 0.946 51 H 0.100 0.900 52 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -12.695 -14.847 14.931 24.587 hybrid contribution 0.705 -1.225 -0.834 1.641 sum -11.990 -16.072 14.097 24.511 Atomic orbital electron populations 1.21518 0.92995 1.01481 1.03404 1.21631 0.98734 0.93951 1.04168 1.20755 0.82116 0.91822 0.75492 1.90700 1.55259 1.46534 1.49437 1.46000 1.07032 1.08548 1.75298 1.21018 0.93653 0.83643 0.96789 0.88793 1.21929 0.99640 1.01174 0.93396 1.22272 0.86872 0.97605 1.00782 1.61468 1.06197 1.55655 1.00653 1.22039 0.97137 0.95722 0.94206 1.20102 0.80573 0.85204 0.84680 1.90651 1.45872 1.24948 1.78169 1.47948 1.39298 1.26605 1.18852 1.21429 0.95678 0.84210 1.00464 1.22236 1.00346 0.97905 1.02284 1.19627 0.97945 0.92234 0.80445 1.21316 1.18756 1.16696 0.99798 0.90777 1.24861 0.94800 0.94683 0.98692 1.69899 1.30695 1.21239 1.31730 0.86856 0.80049 0.79062 0.83727 1.19910 1.21103 1.19152 1.22795 1.00496 0.96584 0.90417 1.22057 0.94406 0.97714 0.81705 0.89915 1.86547 1.36242 1.86181 1.27693 0.92179 0.92002 0.91934 0.89103 0.89054 0.76785 0.89382 0.90294 0.95627 0.87938 0.88257 0.92530 0.89645 0.91595 0.91977 0.93241 0.92159 0.95365 0.94667 0.92577 0.94596 0.90042 0.77275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.20 37.16 0.34 -0.72 16 2 C -0.14 -1.06 6.42 -27.88 -0.18 -1.23 16 3 C 0.51 5.61 7.80 -10.99 -0.09 5.52 16 4 O -0.54 -8.11 15.65 5.56 0.09 -8.02 16 5 N -0.72 -6.94 4.17 -53.68 -0.22 -7.17 16 6 C 0.15 1.70 2.51 -67.80 -0.17 1.53 16 7 H 0.09 1.20 7.59 -51.93 -0.39 0.81 16 8 C -0.12 -1.52 5.76 -26.65 -0.15 -1.68 16 9 C 0.05 0.69 4.96 -3.84 -0.02 0.67 16 10 N -0.51 -6.65 4.39 -236.12 -1.04 -7.68 16 11 C 0.04 0.53 4.00 -4.98 -0.02 0.51 16 12 C 0.51 9.71 7.35 -10.99 -0.08 9.63 16 13 O -0.52 -12.18 13.93 5.55 0.08 -12.10 16 14 N -0.59 -11.53 2.46 -175.06 -0.43 -11.96 16 15 C 0.11 1.53 5.93 -4.04 -0.02 1.50 16 16 C -0.17 -1.95 10.24 37.16 0.38 -1.57 16 17 C 0.22 5.18 4.23 -5.19 -0.02 5.16 16 18 C -0.53 -14.90 9.94 -34.44 -0.34 -15.24 16 19 H 0.07 2.30 8.06 -52.48 -0.42 1.88 16 20 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 21 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 22 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 23 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 26 C 0.03 0.24 4.92 -3.84 -0.02 0.22 16 27 C 0.10 0.95 3.36 -26.65 -0.09 0.86 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 29 O -0.56 -4.69 13.14 -35.23 -0.46 -5.15 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 32 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.40 3.10 7.01 -40.82 -0.29 2.81 16 36 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.03 0.30 7.69 -51.93 -0.40 -0.10 16 39 H 0.10 1.71 5.80 -51.93 -0.30 1.41 16 40 H 0.10 1.18 7.24 -51.93 -0.38 0.81 16 41 H 0.06 0.63 7.16 -51.93 -0.37 0.26 16 42 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 43 H 0.07 0.77 6.44 -51.93 -0.33 0.44 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.05 0.53 7.22 -51.93 -0.37 0.16 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 48 H 0.04 0.90 6.85 -51.93 -0.36 0.55 16 49 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 50 H 0.04 0.29 6.64 -51.93 -0.34 -0.05 16 51 H 0.08 0.65 8.01 -51.93 -0.42 0.23 16 52 H 0.38 1.64 9.08 45.56 0.41 2.05 16 LS Contribution 407.64 15.07 6.14 6.14 Total: -1.00 -36.60 407.64 -8.46 -45.06 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -8.14 Total: 3.72 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -0.58 Total: 7.15 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -0.92 Total: -53.55 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.30 Total: -25.27 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.60 -8.46 -45.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099613888.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.369 kcal (2) G-P(sol) polarization free energy of solvation -36.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds