Wall clock time and date at job start Wed Apr 1 2020 00:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.46622 * 2 1 4 4 O 1.21280 * 120.00158 * 359.97438 * 3 2 1 5 5 N 1.34772 * 119.99991 * 180.02562 * 3 2 1 6 6 C 1.46502 * 120.00236 * 179.97438 * 5 3 2 7 7 H 1.09000 * 109.57160 * 35.15844 * 6 5 3 8 8 C 1.53123 * 109.52324 * 274.99808 * 6 5 3 9 9 C 1.53036 * 109.27788 * 297.74862 * 8 6 5 10 10 N 1.46842 * 109.52190 * 300.81892 * 9 8 6 11 11 C 1.46907 * 110.99676 * 185.84074 * 10 9 8 12 12 C 1.50694 * 109.47035 * 66.04843 * 11 10 9 13 13 O 1.21285 * 120.00072 * 359.97438 * 12 11 10 14 14 N 1.34780 * 120.00016 * 179.97438 * 12 11 10 15 15 C 1.46495 * 119.99960 * 359.97438 * 14 12 11 16 16 C 1.53005 * 109.47174 * 90.00096 * 15 14 12 17 17 C 1.46503 * 120.00126 * 179.97438 * 14 12 11 18 18 C 1.50701 * 109.47069 * 89.99747 * 17 14 12 19 19 H 1.08004 * 120.00194 * 359.97438 * 18 17 14 20 20 C 1.37879 * 120.00040 * 179.97438 * 18 17 14 21 21 N 1.31515 * 119.99843 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99705 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47089 * 90.00110 * 22 20 18 24 24 H 1.48498 * 109.46934 * 210.00000 * 22 20 18 25 25 H 1.48502 * 109.47340 * 330.00212 * 22 20 18 26 26 C 1.46848 * 111.20069 * 61.74451 * 10 9 8 27 27 C 1.53032 * 109.52348 * 298.25721 * 26 10 9 28 28 H 1.08998 * 109.50355 * 299.19707 * 27 26 10 29 29 O 1.42898 * 109.50640 * 179.11704 * 27 26 10 30 30 H 1.09007 * 109.46576 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47247 * 300.00123 * 1 2 3 32 32 H 1.08998 * 109.47415 * 60.00873 * 1 2 3 33 33 H 1.08993 * 109.47247 * 239.99877 * 2 1 3 34 34 H 1.08998 * 109.47415 * 119.99127 * 2 1 3 35 35 H 0.96998 * 119.99816 * 359.97438 * 5 3 2 36 36 H 1.09000 * 109.50367 * 177.80407 * 8 6 5 37 37 H 1.09006 * 109.50264 * 57.68746 * 8 6 5 38 38 H 1.09002 * 109.46126 * 60.83950 * 9 8 6 39 39 H 1.09000 * 109.45809 * 180.80452 * 9 8 6 40 40 H 1.09004 * 109.46587 * 186.04463 * 11 10 9 41 41 H 1.08994 * 109.47194 * 306.04470 * 11 10 9 42 42 H 1.08997 * 109.47916 * 210.00058 * 15 14 12 43 43 H 1.09006 * 109.47452 * 330.00751 * 15 14 12 44 44 H 1.08995 * 109.47605 * 180.02562 * 16 15 14 45 45 H 1.09005 * 109.47101 * 300.00277 * 16 15 14 46 46 H 1.09001 * 109.47082 * 59.99993 * 16 15 14 47 47 H 1.08998 * 109.46776 * 209.99682 * 17 14 12 48 48 H 1.08994 * 109.46819 * 330.00076 * 17 14 12 49 49 H 0.97005 * 119.99341 * 179.97438 * 21 20 18 50 50 H 1.09003 * 109.46014 * 58.27448 * 26 10 9 51 51 H 1.08995 * 109.46374 * 178.23478 * 26 10 9 52 52 H 0.96698 * 113.99767 * 59.99737 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2441 2.3427 -0.0005 5 7 3.3572 1.6673 -0.0005 6 6 3.8455 3.0485 -0.0011 7 1 3.1758 3.6728 0.5904 8 6 3.8970 3.5725 -1.4390 9 6 4.8849 2.7297 -2.2487 10 7 6.2157 2.8067 -1.6328 11 6 7.2189 2.1228 -2.4598 12 6 7.3838 2.8614 -3.7629 13 8 6.7296 3.8591 -3.9814 14 7 8.2582 2.4134 -4.6855 15 6 9.0487 1.2088 -4.4214 16 6 8.2864 -0.0209 -4.9193 17 6 8.4180 3.1312 -5.9526 18 6 9.4947 4.1754 -5.8061 19 1 10.0083 4.2930 -4.8632 20 6 9.8242 4.9807 -6.8756 21 7 10.7642 5.8916 -6.7478 22 14 8.9355 4.7779 -8.5061 23 1 7.7397 5.6580 -8.5309 24 1 9.8478 5.1510 -9.6168 25 1 8.5125 3.3635 -8.6668 26 6 6.2012 2.2653 -0.2678 27 6 5.2526 3.0941 0.6011 28 1 5.6004 4.1265 0.6369 29 8 5.2231 2.5545 1.9240 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 3.9876 0.9301 -0.0005 36 1 4.2231 4.6126 -1.4358 37 1 2.9060 3.5026 -1.8875 38 1 4.5507 1.6923 -2.2630 39 1 4.9346 3.1092 -3.2693 40 1 8.1720 2.1013 -1.9312 41 1 6.8910 1.1027 -2.6593 42 1 10.0038 1.2794 -4.9418 43 1 9.2249 1.1175 -3.3495 44 1 8.8744 -0.9173 -4.7224 45 1 7.3313 -0.0917 -4.3988 46 1 8.1102 0.0703 -5.9911 47 1 8.6988 2.4273 -6.7360 48 1 7.4775 3.6140 -6.2179 49 1 10.9962 6.4579 -7.5005 50 1 5.8609 1.2300 -0.2914 51 1 7.2069 2.3073 0.1503 52 1 6.0832 2.5492 2.3659 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099613888.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:23 Heat of formation + Delta-G solvation = -143.169657 kcal Electronic energy + Delta-G solvation = -31493.887490 eV Core-core repulsion = 27299.291018 eV Total energy + Delta-G solvation = -4194.596472 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.61557 -40.73010 -39.54404 -37.32085 -36.73527 -35.67114 -34.83108 -33.83464 -32.45018 -31.84159 -30.73720 -29.95163 -28.09958 -25.61153 -24.61329 -24.24319 -24.15569 -23.23328 -21.63248 -20.28185 -19.86017 -19.09139 -18.40255 -18.25571 -18.00667 -17.21764 -17.00274 -16.69506 -16.44285 -16.41827 -16.00859 -15.80725 -15.34822 -15.11688 -14.79036 -14.64145 -14.61180 -14.38272 -14.19187 -13.89199 -13.71930 -13.69151 -13.46876 -13.30173 -13.18789 -13.06488 -12.72767 -12.63405 -12.53526 -12.50636 -12.38219 -12.17037 -12.02984 -11.96878 -11.85813 -11.71957 -11.48289 -11.11806 -10.83329 -10.82678 -10.50100 -10.08336 -9.39946 -9.22327 -8.33499 -6.37564 1.31282 1.35768 1.43422 1.68029 1.86549 2.15956 2.24569 2.30501 2.81506 3.01150 3.17992 3.61369 3.71491 3.75952 3.83797 4.04591 4.11387 4.15255 4.20924 4.23450 4.26014 4.27454 4.39213 4.44138 4.48164 4.57019 4.65259 4.71163 4.73258 4.77751 4.82386 4.91536 4.93665 4.97917 5.01616 5.03031 5.04688 5.06348 5.14024 5.32914 5.40188 5.48437 5.50487 5.68935 5.88542 6.06612 6.26365 6.56115 6.64029 6.78959 6.85130 7.23652 7.29282 7.52102 8.83430 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015457 B = 0.002582 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.096439 B =10840.775154 C =11008.292713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.137 4.137 3 C 0.503 3.497 4 O -0.591 6.591 5 N -0.705 5.705 6 C 0.158 3.842 7 H 0.070 0.930 8 C -0.116 4.116 9 C 0.063 3.937 10 N -0.538 5.538 11 C 0.054 3.946 12 C 0.496 3.504 13 O -0.577 6.577 14 N -0.603 5.603 15 C 0.098 3.902 16 C -0.159 4.159 17 C 0.228 3.772 18 C -0.530 4.530 19 H 0.029 0.971 20 C 0.010 3.990 21 N -0.946 5.946 22 Si 0.946 3.054 23 H -0.279 1.279 24 H -0.275 1.275 25 H -0.238 1.238 26 C 0.031 3.969 27 C 0.112 3.888 28 H 0.072 0.928 29 O -0.567 6.567 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.411 0.589 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.046 0.954 39 H 0.063 0.937 40 H 0.123 0.877 41 H 0.092 0.908 42 H 0.069 0.931 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.061 0.939 46 H 0.042 0.958 47 H 0.046 0.954 48 H 0.014 0.986 49 H 0.267 0.733 50 H 0.060 0.940 51 H 0.103 0.897 52 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.321 -20.870 16.195 28.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.176 4.176 3 C 0.292 3.708 4 O -0.472 6.472 5 N -0.357 5.357 6 C 0.052 3.948 7 H 0.089 0.911 8 C -0.155 4.155 9 C -0.065 4.065 10 N -0.265 5.265 11 C -0.076 4.076 12 C 0.284 3.716 13 O -0.456 6.456 14 N -0.335 5.335 15 C -0.024 4.024 16 C -0.218 4.218 17 C 0.105 3.895 18 C -0.569 4.569 19 H 0.048 0.952 20 C -0.188 4.188 21 N -0.586 5.586 22 Si 0.769 3.231 23 H -0.205 1.205 24 H -0.201 1.201 25 H -0.161 1.161 26 C -0.097 4.097 27 C 0.052 3.948 28 H 0.090 0.910 29 O -0.374 6.374 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.248 0.752 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.141 0.859 41 H 0.110 0.890 42 H 0.088 0.912 43 H 0.117 0.883 44 H 0.113 0.887 45 H 0.080 0.920 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.032 0.968 49 H 0.076 0.924 50 H 0.078 0.922 51 H 0.122 0.878 52 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -12.593 -19.172 15.902 27.911 hybrid contribution 0.735 0.141 -1.000 1.249 sum -11.858 -19.031 14.902 26.923 Atomic orbital electron populations 1.21530 0.93703 1.02572 1.01702 1.21688 0.98045 0.91409 1.06507 1.21550 0.81987 0.93032 0.74278 1.90685 1.56466 1.48374 1.51676 1.45892 1.07091 1.08231 1.74487 1.20797 0.94552 0.84212 0.95234 0.91144 1.21785 0.98690 1.00352 0.94645 1.22028 0.87476 0.98289 0.98669 1.61328 1.05664 1.57213 1.02259 1.21968 0.98506 0.96117 0.90999 1.21248 0.79285 0.84827 0.86214 1.90631 1.47889 1.27616 1.79461 1.48074 1.40083 1.27783 1.17566 1.21770 0.94767 0.83262 1.02603 1.22154 1.01041 0.97402 1.01163 1.19227 0.95027 0.91737 0.83517 1.21564 1.19348 1.18041 0.97965 0.95230 1.25838 0.95604 0.94255 1.03113 1.70053 1.32689 1.22621 1.33226 0.85745 0.78345 0.80442 0.78573 1.20498 1.20065 1.16146 1.22842 1.01699 0.97311 0.87804 1.21783 0.92996 0.97551 0.82496 0.91004 1.86514 1.38116 1.85865 1.26936 0.89574 0.93607 0.93847 0.86696 0.86403 0.75155 0.91246 0.91781 0.93610 0.91906 0.85939 0.88987 0.91208 0.88281 0.88711 0.92000 0.93833 0.93653 0.96771 0.92374 0.92179 0.87836 0.74946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.20 71.98 0.66 -1.28 16 2 C -0.14 -1.61 6.42 29.85 0.19 -1.41 16 3 C 0.50 10.45 7.80 87.66 0.68 11.13 16 4 O -0.59 -18.14 15.65 -3.03 -0.05 -18.19 16 5 N -0.70 -12.26 4.17 -442.14 -1.84 -14.10 16 6 C 0.16 3.42 2.51 45.07 0.11 3.53 16 7 H 0.07 1.88 7.59 -2.39 -0.02 1.86 16 8 C -0.12 -3.00 5.76 30.65 0.18 -2.82 16 9 C 0.06 1.64 4.96 86.33 0.43 2.06 16 10 N -0.54 -12.87 4.39 -900.95 -3.96 -16.83 16 11 C 0.05 1.29 4.00 85.55 0.34 1.63 16 12 C 0.50 18.72 7.35 87.65 0.64 19.36 16 13 O -0.58 -27.97 13.93 -3.04 -0.04 -28.01 16 14 N -0.60 -23.00 2.46 -826.15 -2.03 -25.03 16 15 C 0.10 2.57 5.93 86.38 0.51 3.08 16 16 C -0.16 -3.05 10.24 71.98 0.74 -2.31 16 17 C 0.23 10.90 4.23 85.63 0.36 11.26 16 18 C -0.53 -31.00 9.94 25.60 0.25 -30.74 16 19 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 20 C 0.01 0.57 5.47 84.66 0.46 1.04 16 21 N -0.95 -59.94 13.96 21.45 0.30 -59.64 16 22 Si 0.95 44.71 27.47 68.60 1.88 46.59 16 23 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 25 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16 26 C 0.03 0.46 4.92 86.32 0.43 0.88 16 27 C 0.11 1.89 3.36 30.65 0.10 1.99 16 28 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 29 O -0.57 -7.79 13.14 -148.98 -1.96 -9.75 16 30 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.04 0.78 8.10 -2.39 -0.02 0.76 16 32 H 0.04 0.77 8.10 -2.39 -0.02 0.75 16 33 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.41 4.81 7.01 -92.71 -0.65 4.16 16 36 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.05 0.97 7.69 -2.39 -0.02 0.96 16 39 H 0.06 2.17 5.80 -2.39 -0.01 2.16 16 40 H 0.12 2.37 7.24 -2.39 -0.02 2.35 16 41 H 0.09 1.57 7.16 -2.39 -0.02 1.55 16 42 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 43 H 0.10 1.92 6.44 -2.38 -0.02 1.90 16 44 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.06 1.04 7.22 -2.38 -0.02 1.03 16 46 H 0.04 0.98 8.14 -2.39 -0.02 0.97 16 47 H 0.05 2.01 7.13 -2.39 -0.02 1.99 16 48 H 0.01 0.74 6.85 -2.39 -0.02 0.72 16 49 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 50 H 0.06 0.63 6.64 -2.39 -0.02 0.62 16 51 H 0.10 1.14 8.01 -2.39 -0.02 1.12 16 52 H 0.40 2.00 9.08 -74.06 -0.67 1.33 16 Total: -1.00 -87.52 407.64 -2.05 -89.57 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -0.45 Total: 17.99 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: 6.10 Total: 17.40 kcal Atomic # 7 Polarization: -108.07 SS G_CDS: -7.53 Total: -115.60 kcal Atomic # 8 Polarization: -53.90 SS G_CDS: -2.05 Total: -55.95 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.88 Total: 46.59 kcal Total: -87.52 -2.05 -89.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099613888.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.601 kcal (2) G-P(sol) polarization free energy of solvation -87.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds