Wall clock time and date at job start Wed Apr 1 2020 00:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50697 * 109.47102 * 2 1 4 4 O 1.21284 * 120.00341 * 359.97438 * 3 2 1 5 5 N 1.34780 * 120.00009 * 180.02562 * 3 2 1 6 6 C 1.46494 * 120.00168 * 180.02562 * 5 3 2 7 7 H 1.09007 * 109.57420 * 324.83620 * 6 5 3 8 8 C 1.53123 * 109.52595 * 84.99623 * 6 5 3 9 9 C 1.53036 * 109.27788 * 177.56028 * 8 6 5 10 10 N 1.46842 * 109.52190 * 300.81892 * 9 8 6 11 11 C 1.46907 * 110.99676 * 185.84074 * 10 9 8 12 12 C 1.50694 * 109.47035 * 66.04843 * 11 10 9 13 13 O 1.21285 * 120.00072 * 359.97438 * 12 11 10 14 14 N 1.34780 * 120.00016 * 179.97438 * 12 11 10 15 15 C 1.46495 * 119.99960 * 359.97438 * 14 12 11 16 16 C 1.53005 * 109.47174 * 90.00096 * 15 14 12 17 17 C 1.46503 * 120.00126 * 179.97438 * 14 12 11 18 18 C 1.50701 * 109.47069 * 89.99747 * 17 14 12 19 19 H 1.08004 * 120.00194 * 359.97438 * 18 17 14 20 20 C 1.37879 * 120.00040 * 179.97438 * 18 17 14 21 21 N 1.31515 * 119.99694 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 119.99999 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47381 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47223 * 119.99916 * 22 20 18 25 25 H 1.48497 * 109.47447 * 239.99844 * 22 20 18 26 26 C 1.46848 * 111.20069 * 61.74451 * 10 9 8 27 27 C 1.53032 * 109.52348 * 298.25721 * 26 10 9 28 28 H 1.08995 * 109.50502 * 179.15775 * 27 26 10 29 29 O 1.42901 * 109.50320 * 299.23727 * 27 26 10 30 30 H 1.08999 * 109.46862 * 300.00401 * 1 2 3 31 31 H 1.09004 * 109.46954 * 59.99865 * 1 2 3 32 32 H 1.09000 * 109.47254 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46862 * 239.99599 * 2 1 3 34 34 H 1.08999 * 109.46541 * 119.99984 * 2 1 3 35 35 H 0.97003 * 119.99274 * 359.97438 * 5 3 2 36 36 H 1.09000 * 109.50367 * 57.61573 * 8 6 5 37 37 H 1.09006 * 109.50264 * 297.49912 * 8 6 5 38 38 H 1.09002 * 109.46126 * 60.83950 * 9 8 6 39 39 H 1.09000 * 109.45813 * 180.81566 * 9 8 6 40 40 H 1.09004 * 109.46587 * 186.04463 * 11 10 9 41 41 H 1.08994 * 109.47194 * 306.04470 * 11 10 9 42 42 H 1.08997 * 109.47916 * 210.00058 * 15 14 12 43 43 H 1.09006 * 109.47452 * 330.00751 * 15 14 12 44 44 H 1.09001 * 109.47082 * 59.99993 * 16 15 14 45 45 H 1.08995 * 109.47605 * 180.02562 * 16 15 14 46 46 H 1.09005 * 109.47101 * 300.00277 * 16 15 14 47 47 H 1.08998 * 109.46776 * 209.99682 * 17 14 12 48 48 H 1.08994 * 109.46819 * 330.00076 * 17 14 12 49 49 H 0.96996 * 120.00009 * 180.02562 * 21 20 18 50 50 H 1.09003 * 109.46014 * 58.27448 * 26 10 9 51 51 H 1.08995 * 109.46374 * 178.23478 * 26 10 9 52 52 H 0.96700 * 113.99979 * 299.99537 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3575 1.6671 -0.0005 6 6 3.8459 3.0482 0.0000 7 1 3.1757 3.6728 -0.5908 8 6 3.8985 3.5719 1.4380 9 6 4.4665 4.9929 1.4377 10 7 5.8129 4.9831 0.8518 11 6 6.4442 6.3051 0.9610 12 6 6.6874 6.6272 2.4129 13 8 6.3660 5.8339 3.2722 14 7 7.2620 7.7969 2.7566 15 6 7.6506 8.7550 1.7187 16 6 6.4840 9.7043 1.4382 17 6 7.4979 8.1104 4.1681 18 6 8.8612 7.6112 4.5725 19 1 9.4889 7.1102 3.8504 20 6 9.3071 7.7941 5.8643 21 7 8.5429 8.4046 6.7434 22 14 10.9971 7.1761 6.3652 23 1 11.6538 6.5309 5.2000 24 1 11.8246 8.3186 6.8291 25 1 10.8570 6.1879 7.4648 26 6 5.7812 4.5287 -0.5443 27 6 5.2525 3.0939 -0.6032 28 1 5.2150 2.7622 -1.6408 29 8 6.1189 2.2352 0.1411 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9878 0.9297 -0.0005 36 1 4.5381 2.9244 2.0379 37 1 2.8929 3.5820 1.8587 38 1 3.8189 5.6428 0.8491 39 1 4.5188 5.3632 2.4616 40 1 7.3939 6.2995 0.4261 41 1 5.7870 7.0585 0.5268 42 1 8.5126 9.3291 2.0584 43 1 7.9089 8.2174 0.8063 44 1 6.2257 10.2419 2.3506 45 1 6.7729 10.4169 0.6657 46 1 5.6220 9.1302 1.0984 47 1 7.4481 9.1894 4.3139 48 1 6.7373 7.6255 4.7800 49 1 8.8567 8.5337 7.6521 50 1 5.1276 5.1808 -1.1236 51 1 6.7882 4.5622 -0.9600 52 1 7.0293 2.2170 -0.1844 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099613889.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:28 Heat of formation + Delta-G solvation = -117.545932 kcal Electronic energy + Delta-G solvation = -31181.784248 eV Core-core repulsion = 26988.298904 eV Total energy + Delta-G solvation = -4193.485344 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.44367 -39.43029 -38.45996 -35.95391 -35.10180 -34.80518 -33.11432 -32.78310 -31.39932 -30.15638 -29.92461 -28.08725 -26.33895 -24.72915 -23.28415 -23.06704 -22.90702 -21.91354 -20.46640 -19.96253 -18.31817 -17.46314 -17.09490 -16.67725 -16.47598 -16.20519 -15.85335 -15.71956 -15.21055 -14.90788 -14.63672 -14.35694 -14.18880 -13.98877 -13.78867 -13.41589 -13.35738 -13.04090 -12.93225 -12.76324 -12.51084 -12.39876 -12.01624 -11.99924 -11.92215 -11.71129 -11.62924 -11.43945 -11.35768 -11.17808 -10.91874 -10.87505 -10.71975 -10.63911 -10.50897 -10.15981 -10.09597 -9.92551 -9.57274 -9.15944 -8.80412 -8.41076 -8.12851 -7.60003 -6.01556 -4.05761 2.48270 2.97842 3.31465 3.38736 3.41648 3.48815 3.58102 4.04753 4.22105 4.46065 4.48982 4.54533 4.71171 4.76734 4.79981 4.83375 5.05154 5.13597 5.23418 5.26376 5.30573 5.32943 5.38957 5.42691 5.47409 5.50842 5.56010 5.57913 5.63203 5.65582 5.70434 5.78331 5.93115 5.95870 6.01671 6.17774 6.23150 6.38245 6.46974 6.48911 6.94632 7.13492 7.17427 7.37102 7.48406 7.53805 7.60004 7.95611 8.08269 8.27113 8.47632 8.94819 9.17710 9.59360 11.06562 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015271 B = 0.002434 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.148051 B =11502.294584 C =12053.704043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.144 4.144 3 C 0.509 3.491 4 O -0.544 6.544 5 N -0.721 5.721 6 C 0.153 3.847 7 H 0.092 0.908 8 C -0.117 4.117 9 C 0.055 3.945 10 N -0.507 5.507 11 C 0.037 3.963 12 C 0.506 3.494 13 O -0.520 6.520 14 N -0.600 5.600 15 C 0.107 3.893 16 C -0.169 4.169 17 C 0.248 3.752 18 C -0.522 4.522 19 H 0.057 0.943 20 C 0.059 3.941 21 N -0.895 5.895 22 Si 0.898 3.102 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.283 1.283 26 C 0.025 3.975 27 C 0.107 3.893 28 H 0.061 0.939 29 O -0.547 6.547 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.406 0.594 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.024 0.976 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.055 0.945 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.048 0.952 47 H 0.031 0.969 48 H 0.042 0.958 49 H 0.262 0.738 50 H 0.041 0.959 51 H 0.082 0.918 52 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.889 -11.308 -20.520 25.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.185 4.185 3 C 0.295 3.705 4 O -0.421 6.421 5 N -0.372 5.372 6 C 0.048 3.952 7 H 0.110 0.890 8 C -0.156 4.156 9 C -0.073 4.073 10 N -0.232 5.232 11 C -0.094 4.094 12 C 0.292 3.708 13 O -0.396 6.396 14 N -0.333 5.333 15 C -0.017 4.017 16 C -0.227 4.227 17 C 0.129 3.871 18 C -0.561 4.561 19 H 0.076 0.924 20 C -0.142 4.142 21 N -0.535 5.535 22 Si 0.726 3.274 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.209 1.209 26 C -0.104 4.104 27 C 0.047 3.953 28 H 0.079 0.921 29 O -0.353 6.353 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.241 0.759 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.042 0.958 39 H 0.122 0.878 40 H 0.114 0.886 41 H 0.073 0.927 42 H 0.100 0.900 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.067 0.933 47 H 0.049 0.951 48 H 0.060 0.940 49 H 0.072 0.928 50 H 0.059 0.941 51 H 0.100 0.900 52 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -9.901 -11.438 -19.245 24.479 hybrid contribution 1.476 0.227 -0.512 1.579 sum -8.424 -11.210 -19.757 24.228 Atomic orbital electron populations 1.21526 0.93046 1.01494 1.03388 1.21632 0.98653 0.93851 1.04316 1.20834 0.82175 0.91894 0.75565 1.90705 1.55325 1.46559 1.49498 1.46021 1.07055 1.08869 1.75245 1.21088 0.92479 0.83403 0.98236 0.88995 1.21842 1.01228 0.96804 0.95757 1.22234 0.86860 0.96016 1.02168 1.61486 1.21039 1.25281 1.15388 1.22071 1.00307 0.90295 0.96712 1.20093 0.78881 0.81971 0.89880 1.90652 1.50820 1.46882 1.51278 1.48266 1.59168 1.16512 1.09369 1.21385 0.97518 0.91685 0.91114 1.22227 0.98937 0.99693 1.01879 1.19241 0.97133 0.96164 0.74600 1.21473 1.01077 1.37534 0.96046 0.92449 1.24942 0.97740 0.95232 0.96308 1.69942 1.36762 1.42542 1.04229 0.86447 0.83904 0.78484 0.78603 1.19825 1.21063 1.20897 1.22794 1.01440 0.96038 0.90156 1.21999 0.89914 0.89447 0.93975 0.92082 1.86500 1.23711 1.65939 1.59102 0.91903 0.92078 0.92153 0.89085 0.88843 0.75928 0.89643 0.91382 0.95765 0.87838 0.88625 0.92735 0.89965 0.91994 0.91993 0.92243 0.93282 0.95145 0.93968 0.92830 0.94093 0.89954 0.77266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.20 37.16 0.34 -0.70 16 2 C -0.14 -1.02 6.42 -27.88 -0.18 -1.20 16 3 C 0.51 5.51 7.80 -10.98 -0.09 5.43 16 4 O -0.54 -8.08 15.65 5.55 0.09 -7.99 16 5 N -0.72 -7.04 5.05 -53.68 -0.27 -7.31 16 6 C 0.15 1.72 2.30 -67.81 -0.16 1.56 16 7 H 0.09 1.11 7.59 -51.93 -0.39 0.72 16 8 C -0.12 -1.65 5.52 -26.65 -0.15 -1.80 16 9 C 0.06 0.84 5.11 -3.84 -0.02 0.82 16 10 N -0.51 -7.27 4.28 -236.12 -1.01 -8.28 16 11 C 0.04 0.55 4.00 -4.98 -0.02 0.53 16 12 C 0.51 10.40 7.35 -10.99 -0.08 10.32 16 13 O -0.52 -13.04 13.93 5.55 0.08 -12.96 16 14 N -0.60 -12.51 2.46 -175.06 -0.43 -12.94 16 15 C 0.11 1.68 5.93 -4.04 -0.02 1.66 16 16 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 17 C 0.25 6.47 5.16 -5.19 -0.03 6.45 16 18 C -0.52 -14.86 9.39 -34.44 -0.32 -15.19 16 19 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 21 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 22 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 26 C 0.02 0.25 5.12 -3.84 -0.02 0.23 16 27 C 0.11 0.99 3.42 -26.65 -0.09 0.90 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 O -0.55 -5.46 12.06 -35.23 -0.42 -5.89 16 30 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 31 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.41 3.21 8.12 -40.82 -0.33 2.88 16 36 H 0.08 1.37 7.80 -51.93 -0.40 0.97 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.10 1.95 5.80 -51.93 -0.30 1.64 16 40 H 0.10 1.23 7.24 -51.93 -0.38 0.86 16 41 H 0.05 0.71 7.16 -51.93 -0.37 0.33 16 42 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 43 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.05 0.62 7.22 -51.93 -0.37 0.24 16 47 H 0.03 0.80 8.07 -51.93 -0.42 0.39 16 48 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 49 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 50 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.08 0.69 8.01 -51.93 -0.42 0.28 16 52 H 0.38 2.55 9.08 45.56 0.41 2.97 16 LS Contribution 413.60 15.07 6.23 6.23 Total: -1.00 -36.45 413.60 -8.88 -45.33 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -8.31 Total: 4.08 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -0.55 Total: 8.76 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.97 Total: -54.61 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.26 Total: -26.83 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -36.45 -8.88 -45.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099613889.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.217 kcal (2) G-P(sol) polarization free energy of solvation -36.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds