Wall clock time and date at job start Wed Apr 1 2020 00:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50697 * 109.47102 * 2 1 4 4 O 1.21284 * 120.00341 * 359.97438 * 3 2 1 5 5 N 1.34780 * 120.00009 * 180.02562 * 3 2 1 6 6 C 1.46494 * 120.00168 * 180.02562 * 5 3 2 7 7 H 1.09007 * 109.57420 * 324.83620 * 6 5 3 8 8 C 1.53123 * 109.52595 * 84.99623 * 6 5 3 9 9 C 1.53036 * 109.27788 * 177.56028 * 8 6 5 10 10 N 1.46842 * 109.52190 * 300.81892 * 9 8 6 11 11 C 1.46907 * 110.99676 * 185.84074 * 10 9 8 12 12 C 1.50694 * 109.47035 * 66.04843 * 11 10 9 13 13 O 1.21285 * 120.00072 * 359.97438 * 12 11 10 14 14 N 1.34780 * 120.00016 * 179.97438 * 12 11 10 15 15 C 1.46495 * 119.99960 * 359.97438 * 14 12 11 16 16 C 1.53005 * 109.47174 * 90.00096 * 15 14 12 17 17 C 1.46503 * 120.00126 * 179.97438 * 14 12 11 18 18 C 1.50701 * 109.47069 * 89.99747 * 17 14 12 19 19 H 1.08004 * 120.00194 * 359.97438 * 18 17 14 20 20 C 1.37879 * 120.00040 * 179.97438 * 18 17 14 21 21 N 1.31515 * 119.99694 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 119.99999 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47381 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47223 * 119.99916 * 22 20 18 25 25 H 1.48497 * 109.47447 * 239.99844 * 22 20 18 26 26 C 1.46848 * 111.20069 * 61.74451 * 10 9 8 27 27 C 1.53032 * 109.52348 * 298.25721 * 26 10 9 28 28 H 1.08995 * 109.50502 * 179.15775 * 27 26 10 29 29 O 1.42901 * 109.50320 * 299.23727 * 27 26 10 30 30 H 1.08999 * 109.46862 * 300.00401 * 1 2 3 31 31 H 1.09004 * 109.46954 * 59.99865 * 1 2 3 32 32 H 1.09000 * 109.47254 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46862 * 239.99599 * 2 1 3 34 34 H 1.08999 * 109.46541 * 119.99984 * 2 1 3 35 35 H 0.97003 * 119.99274 * 359.97438 * 5 3 2 36 36 H 1.09000 * 109.50367 * 57.61573 * 8 6 5 37 37 H 1.09006 * 109.50264 * 297.49912 * 8 6 5 38 38 H 1.09002 * 109.46126 * 60.83950 * 9 8 6 39 39 H 1.09000 * 109.45813 * 180.81566 * 9 8 6 40 40 H 1.09004 * 109.46587 * 186.04463 * 11 10 9 41 41 H 1.08994 * 109.47194 * 306.04470 * 11 10 9 42 42 H 1.08997 * 109.47916 * 210.00058 * 15 14 12 43 43 H 1.09006 * 109.47452 * 330.00751 * 15 14 12 44 44 H 1.09001 * 109.47082 * 59.99993 * 16 15 14 45 45 H 1.08995 * 109.47605 * 180.02562 * 16 15 14 46 46 H 1.09005 * 109.47101 * 300.00277 * 16 15 14 47 47 H 1.08998 * 109.46776 * 209.99682 * 17 14 12 48 48 H 1.08994 * 109.46819 * 330.00076 * 17 14 12 49 49 H 0.96996 * 120.00009 * 180.02562 * 21 20 18 50 50 H 1.09003 * 109.46014 * 58.27448 * 26 10 9 51 51 H 1.08995 * 109.46374 * 178.23478 * 26 10 9 52 52 H 0.96700 * 113.99979 * 299.99537 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3575 1.6671 -0.0005 6 6 3.8459 3.0482 0.0000 7 1 3.1757 3.6728 -0.5908 8 6 3.8985 3.5719 1.4380 9 6 4.4665 4.9929 1.4377 10 7 5.8129 4.9831 0.8518 11 6 6.4442 6.3051 0.9610 12 6 6.6874 6.6272 2.4129 13 8 6.3660 5.8339 3.2722 14 7 7.2620 7.7969 2.7566 15 6 7.6506 8.7550 1.7187 16 6 6.4840 9.7043 1.4382 17 6 7.4979 8.1104 4.1681 18 6 8.8612 7.6112 4.5725 19 1 9.4889 7.1102 3.8504 20 6 9.3071 7.7941 5.8643 21 7 8.5429 8.4046 6.7434 22 14 10.9971 7.1761 6.3652 23 1 11.6538 6.5309 5.2000 24 1 11.8246 8.3186 6.8291 25 1 10.8570 6.1879 7.4648 26 6 5.7812 4.5287 -0.5443 27 6 5.2525 3.0939 -0.6032 28 1 5.2150 2.7622 -1.6408 29 8 6.1189 2.2352 0.1411 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9878 0.9297 -0.0005 36 1 4.5381 2.9244 2.0379 37 1 2.8929 3.5820 1.8587 38 1 3.8189 5.6428 0.8491 39 1 4.5188 5.3632 2.4616 40 1 7.3939 6.2995 0.4261 41 1 5.7870 7.0585 0.5268 42 1 8.5126 9.3291 2.0584 43 1 7.9089 8.2174 0.8063 44 1 6.2257 10.2419 2.3506 45 1 6.7729 10.4169 0.6657 46 1 5.6220 9.1302 1.0984 47 1 7.4481 9.1894 4.3139 48 1 6.7373 7.6255 4.7800 49 1 8.8567 8.5337 7.6521 50 1 5.1276 5.1808 -1.1236 51 1 6.7882 4.5622 -0.9600 52 1 7.0293 2.2170 -0.1844 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099613889.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:27 Heat of formation + Delta-G solvation = -147.780952 kcal Electronic energy + Delta-G solvation = -31183.095336 eV Core-core repulsion = 26988.298904 eV Total energy + Delta-G solvation = -4194.796433 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.42092 -40.71565 -39.58364 -37.13517 -36.52317 -35.71531 -34.89784 -33.81527 -32.45175 -31.61028 -30.87825 -29.62865 -27.85758 -25.72019 -24.71739 -24.24942 -24.06276 -23.20680 -21.34404 -20.82158 -19.87371 -18.62290 -18.34832 -17.97911 -17.60311 -17.52728 -17.18145 -16.65613 -16.44971 -16.36548 -15.83219 -15.54739 -15.38991 -15.22483 -14.75734 -14.65315 -14.42720 -14.34130 -14.13644 -13.89869 -13.66031 -13.57632 -13.30064 -13.17582 -13.05350 -12.84001 -12.70914 -12.67991 -12.63825 -12.54370 -12.43850 -12.20353 -12.07454 -12.01671 -11.83813 -11.67005 -11.59450 -10.94713 -10.82477 -10.64859 -10.40484 -10.03030 -9.40823 -9.17398 -8.21656 -6.36348 1.35604 1.38576 1.50312 1.65311 1.91333 2.19586 2.25651 2.41284 2.92084 3.07643 3.36643 3.67862 3.70797 3.85157 3.86290 3.97639 4.08713 4.15484 4.22482 4.26650 4.28202 4.31325 4.42645 4.44990 4.52246 4.62597 4.66589 4.70902 4.73206 4.78004 4.84897 4.93473 4.97758 4.99434 5.03703 5.05966 5.06718 5.22857 5.27481 5.33493 5.38159 5.51459 5.60024 5.86691 5.95617 6.08159 6.14595 6.60128 6.72772 6.87380 7.00495 7.29268 7.30404 7.58859 8.85494 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015271 B = 0.002434 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.148051 B =11502.294584 C =12053.704043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.138 4.138 3 C 0.501 3.499 4 O -0.591 6.591 5 N -0.711 5.711 6 C 0.155 3.845 7 H 0.086 0.914 8 C -0.108 4.108 9 C 0.062 3.938 10 N -0.527 5.527 11 C 0.053 3.947 12 C 0.494 3.506 13 O -0.579 6.579 14 N -0.607 5.607 15 C 0.101 3.899 16 C -0.161 4.161 17 C 0.264 3.736 18 C -0.536 4.536 19 H 0.054 0.946 20 C 0.003 3.997 21 N -0.931 5.931 22 Si 0.969 3.031 23 H -0.265 1.265 24 H -0.269 1.269 25 H -0.284 1.284 26 C 0.023 3.977 27 C 0.115 3.885 28 H 0.098 0.902 29 O -0.566 6.566 30 H 0.040 0.960 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.122 0.878 34 H 0.110 0.890 35 H 0.417 0.583 36 H 0.059 0.941 37 H 0.046 0.954 38 H 0.036 0.964 39 H 0.056 0.944 40 H 0.128 0.872 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.103 0.897 44 H 0.035 0.965 45 H 0.096 0.904 46 H 0.056 0.944 47 H 0.019 0.981 48 H -0.009 1.009 49 H 0.266 0.734 50 H 0.058 0.942 51 H 0.111 0.889 52 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.110 -12.532 -24.271 28.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.177 4.177 3 C 0.290 3.710 4 O -0.471 6.471 5 N -0.362 5.362 6 C 0.049 3.951 7 H 0.104 0.896 8 C -0.147 4.147 9 C -0.067 4.067 10 N -0.252 5.252 11 C -0.078 4.078 12 C 0.282 3.718 13 O -0.459 6.459 14 N -0.339 5.339 15 C -0.022 4.022 16 C -0.219 4.219 17 C 0.143 3.857 18 C -0.575 4.575 19 H 0.072 0.928 20 C -0.195 4.195 21 N -0.571 5.571 22 Si 0.793 3.207 23 H -0.189 1.189 24 H -0.194 1.194 25 H -0.210 1.210 26 C -0.105 4.105 27 C 0.055 3.945 28 H 0.115 0.885 29 O -0.374 6.374 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.140 0.860 34 H 0.128 0.872 35 H 0.254 0.746 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.146 0.854 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.121 0.879 44 H 0.054 0.946 45 H 0.115 0.885 46 H 0.075 0.925 47 H 0.037 0.963 48 H 0.009 0.991 49 H 0.075 0.925 50 H 0.076 0.924 51 H 0.129 0.871 52 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -8.083 -12.662 -23.061 27.522 hybrid contribution 0.872 0.616 0.683 1.267 sum -7.211 -12.046 -22.378 26.418 Atomic orbital electron populations 1.21537 0.93655 1.02578 1.01744 1.21693 0.98038 0.91434 1.06553 1.21593 0.82015 0.93070 0.74330 1.90685 1.56451 1.48308 1.51704 1.45960 1.07119 1.08707 1.74417 1.20981 0.94317 0.84001 0.95775 0.89574 1.21671 0.99170 0.96055 0.97772 1.21991 0.88235 0.96507 0.99927 1.61394 1.20056 1.25212 1.18552 1.21990 1.02454 0.91427 0.91913 1.21270 0.77351 0.80819 0.92334 1.90630 1.52931 1.48692 1.53622 1.48300 1.59315 1.18053 1.08248 1.21731 0.98117 0.91458 0.90853 1.22156 0.98226 0.99689 1.01817 1.18637 0.94827 0.94516 0.77743 1.21738 1.01795 1.37551 0.96422 0.92758 1.25905 1.02024 0.95286 0.96305 1.70070 1.38820 1.43549 1.04685 0.85344 0.78916 0.78203 0.78200 1.18865 1.19419 1.20971 1.22998 1.03642 0.96442 0.87436 1.22000 0.88099 0.89195 0.95222 0.88462 1.86473 1.24966 1.66015 1.59919 0.94102 0.93241 0.89608 0.85972 0.87156 0.74564 0.92186 0.93475 0.94641 0.92551 0.85436 0.90071 0.91042 0.87856 0.94607 0.88512 0.92492 0.96321 0.99066 0.92517 0.92393 0.87119 0.75479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.20 71.98 0.66 -1.31 16 2 C -0.14 -1.68 6.42 29.85 0.19 -1.49 16 3 C 0.50 10.54 7.80 87.66 0.68 11.22 16 4 O -0.59 -17.96 15.65 -3.04 -0.05 -18.00 16 5 N -0.71 -12.96 5.05 -442.14 -2.23 -15.19 16 6 C 0.15 3.31 2.30 45.07 0.10 3.41 16 7 H 0.09 1.99 7.59 -2.38 -0.02 1.97 16 8 C -0.11 -3.17 5.52 30.65 0.17 -3.00 16 9 C 0.06 1.94 5.11 86.33 0.44 2.38 16 10 N -0.53 -14.31 4.28 -900.95 -3.85 -18.16 16 11 C 0.05 1.43 4.00 85.55 0.34 1.77 16 12 C 0.49 20.67 7.35 87.65 0.64 21.31 16 13 O -0.58 -30.84 13.93 -3.04 -0.04 -30.89 16 14 N -0.61 -25.81 2.46 -826.15 -2.03 -27.84 16 15 C 0.10 2.98 5.93 86.38 0.51 3.50 16 16 C -0.16 -3.94 10.24 71.98 0.74 -3.20 16 17 C 0.26 14.62 5.16 85.63 0.44 15.06 16 18 C -0.54 -31.48 9.39 25.60 0.24 -31.24 16 19 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 20 C 0.00 0.19 5.46 84.66 0.46 0.65 16 21 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 22 Si 0.97 45.76 29.54 68.60 2.03 47.78 16 23 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 26 C 0.02 0.37 5.12 86.32 0.44 0.81 16 27 C 0.11 1.76 3.42 30.65 0.10 1.86 16 28 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 29 O -0.57 -9.84 12.06 -148.98 -1.80 -11.63 16 30 H 0.04 0.75 8.10 -2.39 -0.02 0.73 16 31 H 0.05 0.81 8.10 -2.38 -0.02 0.80 16 32 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.42 5.70 8.12 -92.71 -0.75 4.94 16 36 H 0.06 2.04 7.80 -2.39 -0.02 2.03 16 37 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.06 2.31 5.80 -2.39 -0.01 2.29 16 40 H 0.13 2.68 7.24 -2.39 -0.02 2.67 16 41 H 0.08 1.81 7.16 -2.39 -0.02 1.79 16 42 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 43 H 0.10 2.22 6.44 -2.38 -0.02 2.20 16 44 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.06 1.30 7.22 -2.38 -0.02 1.29 16 47 H 0.02 1.06 8.07 -2.39 -0.02 1.04 16 48 H -0.01 -0.57 7.42 -2.39 -0.02 -0.59 16 49 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 50 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.11 1.24 8.01 -2.39 -0.02 1.22 16 52 H 0.40 4.01 9.08 -74.06 -0.67 3.34 16 Total: -1.00 -87.74 413.60 -2.02 -89.76 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -0.50 Total: 19.87 kcal Atomic # 6 Polarization: 15.56 SS G_CDS: 6.18 Total: 21.74 kcal Atomic # 7 Polarization: -110.80 SS G_CDS: -7.83 Total: -118.63 kcal Atomic # 8 Polarization: -58.64 SS G_CDS: -1.89 Total: -60.53 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -87.74 -2.02 -89.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099613889.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.021 kcal (2) G-P(sol) polarization free energy of solvation -87.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds