Wall clock time and date at job start Wed Apr 1 2020 00:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47133 * 2 1 4 4 O 1.21276 * 119.99975 * 0.02562 * 3 2 1 5 5 N 1.34782 * 119.99660 * 179.97438 * 3 2 1 6 6 C 1.46504 * 119.99674 * 180.27695 * 5 3 2 7 7 H 1.09002 * 109.52255 * 324.72685 * 6 5 3 8 8 C 1.53113 * 109.52011 * 84.85493 * 6 5 3 9 9 C 1.53043 * 109.27407 * 177.49584 * 8 6 5 10 10 N 1.46854 * 109.57525 * 300.91702 * 9 8 6 11 11 C 1.46900 * 110.99985 * 185.80744 * 10 9 8 12 12 C 1.50699 * 109.46993 * 169.42992 * 11 10 9 13 13 O 1.21281 * 120.00207 * 353.88425 * 12 11 10 14 14 N 1.34774 * 119.99964 * 173.87861 * 12 11 10 15 15 C 1.46504 * 120.00185 * 0.02562 * 14 12 11 16 16 C 1.52999 * 109.46848 * 89.99570 * 15 14 12 17 17 C 1.46502 * 119.99941 * 180.02562 * 14 12 11 18 18 C 1.50701 * 109.47261 * 90.00235 * 17 14 12 19 19 H 1.07997 * 119.99773 * 0.02562 * 18 17 14 20 20 C 1.37878 * 120.00065 * 179.97438 * 18 17 14 21 21 N 1.31508 * 119.99735 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00036 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.46965 * 89.99261 * 22 20 18 24 24 H 1.48489 * 109.47570 * 209.99654 * 22 20 18 25 25 H 1.48503 * 109.47367 * 330.00174 * 22 20 18 26 26 C 1.46850 * 111.19874 * 61.70967 * 10 9 8 27 27 C 1.53036 * 109.52025 * 298.25874 * 26 10 9 28 28 H 1.08997 * 109.50704 * 299.23811 * 27 26 10 29 29 O 1.42905 * 109.53391 * 179.13479 * 27 26 10 30 30 H 1.09006 * 109.46765 * 59.99768 * 1 2 3 31 31 H 1.08991 * 109.47270 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47073 * 300.00373 * 1 2 3 33 33 H 1.09000 * 109.47167 * 240.00371 * 2 1 3 34 34 H 1.08997 * 109.47340 * 120.00298 * 2 1 3 35 35 H 0.96994 * 119.99899 * 0.02562 * 5 3 2 36 36 H 1.09000 * 109.50785 * 297.49719 * 8 6 5 37 37 H 1.09001 * 109.50161 * 57.62052 * 8 6 5 38 38 H 1.09001 * 109.46690 * 180.87313 * 9 8 6 39 39 H 1.09004 * 109.40505 * 60.92827 * 9 8 6 40 40 H 1.09002 * 109.46967 * 289.43049 * 11 10 9 41 41 H 1.08996 * 109.47407 * 49.43001 * 11 10 9 42 42 H 1.08997 * 109.47383 * 209.99918 * 15 14 12 43 43 H 1.09001 * 109.46837 * 330.00030 * 15 14 12 44 44 H 1.09001 * 109.47026 * 60.00576 * 16 15 14 45 45 H 1.09006 * 109.46645 * 180.02562 * 16 15 14 46 46 H 1.08994 * 109.47430 * 299.99788 * 16 15 14 47 47 H 1.09007 * 109.46592 * 210.00173 * 17 14 12 48 48 H 1.08998 * 109.47179 * 330.00059 * 17 14 12 49 49 H 0.97005 * 119.99902 * 180.02562 * 21 20 18 50 50 H 1.08993 * 109.46143 * 178.24494 * 26 10 9 51 51 H 1.09001 * 109.45801 * 58.27325 * 26 10 9 52 52 H 0.96704 * 113.99564 * 60.18061 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3575 1.6671 0.0005 6 6 3.8458 3.0483 0.0067 7 1 3.1762 3.6740 -0.5834 8 6 3.8950 3.5672 1.4464 9 6 4.4645 4.9877 1.4522 10 7 5.8118 4.9800 0.8680 11 6 6.4429 6.3016 0.9828 12 6 7.9007 6.1956 0.6160 13 8 8.3940 5.1091 0.3988 14 7 8.6563 7.3082 0.5292 15 6 8.0607 8.6206 0.7919 16 6 8.1960 8.9535 2.2791 17 6 10.0734 7.2053 0.1720 18 6 10.2218 7.2920 -1.3252 19 1 9.3479 7.4123 -1.9483 20 6 11.4732 7.2189 -1.8993 21 7 11.6026 7.2951 -3.2058 22 14 12.9847 7.0116 -0.8215 23 1 13.2609 5.5652 -0.6292 24 1 14.1516 7.6557 -1.4760 25 1 12.7430 7.6489 0.4979 26 6 5.7819 4.5307 -0.5298 27 6 5.2532 3.0961 -0.5946 28 1 5.9133 2.4390 -0.0284 29 8 5.2051 2.6656 -1.9564 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.9877 0.9298 0.0005 36 1 2.8885 3.5759 1.8647 37 1 4.5332 2.9177 2.0456 38 1 4.5154 5.3544 2.4774 39 1 3.8177 5.6396 0.8650 40 1 5.9483 7.0003 0.3080 41 1 6.3514 6.6601 2.0080 42 1 8.5759 9.3783 0.2016 43 1 7.0057 8.6021 0.5183 44 1 9.2509 8.9720 2.5528 45 1 7.7523 9.9299 2.4747 46 1 7.6806 8.1959 2.8694 47 1 10.6261 8.0201 0.6398 48 1 10.4678 6.2511 0.5215 49 1 12.4830 7.2433 -3.6098 50 1 6.7895 4.5656 -0.9440 51 1 5.1290 5.1849 -1.1076 52 1 6.0638 2.6707 -2.4011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099613890.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:31 Heat of formation + Delta-G solvation = -147.003767 kcal Electronic energy + Delta-G solvation = -31153.241841 eV Core-core repulsion = 26958.479109 eV Total energy + Delta-G solvation = -4194.762731 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.46042 -40.76024 -39.58556 -37.34508 -36.84858 -35.81279 -34.85357 -33.81501 -32.56477 -31.78728 -30.81524 -29.93289 -28.03321 -25.72610 -24.47831 -24.25831 -23.99994 -23.11103 -21.46769 -20.90136 -19.82704 -19.10115 -18.46158 -18.13661 -17.99603 -17.60973 -17.15973 -16.75133 -16.53433 -16.29681 -15.97725 -15.51325 -15.26717 -14.97691 -14.94455 -14.68675 -14.52034 -14.49858 -14.11948 -14.04633 -13.84582 -13.67276 -13.51334 -13.22219 -13.17273 -13.06494 -12.83140 -12.62609 -12.52583 -12.46085 -12.32669 -12.23263 -12.03083 -12.01414 -11.87541 -11.74031 -11.60400 -11.17341 -10.83860 -10.82676 -10.54313 -10.09942 -9.39920 -9.36164 -8.34020 -6.38585 1.32541 1.35989 1.44531 1.66850 1.83321 2.15552 2.19817 2.30568 2.74001 3.00488 3.12536 3.57748 3.71341 3.80687 3.92080 3.93638 4.04723 4.08996 4.14842 4.22776 4.27722 4.28794 4.35941 4.42735 4.45507 4.57763 4.65866 4.71747 4.73156 4.76555 4.81420 4.84948 4.91056 4.94187 5.00528 5.02018 5.03240 5.07518 5.16738 5.33336 5.40067 5.47419 5.47709 5.66526 5.77940 5.98340 6.25099 6.56386 6.62539 6.63990 6.75903 7.22545 7.27568 7.48323 8.82742 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017544 B = 0.002479 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.582856 B =11290.862905 C =12341.283738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.138 4.138 3 C 0.505 3.495 4 O -0.589 6.589 5 N -0.711 5.711 6 C 0.157 3.843 7 H 0.063 0.937 8 C -0.113 4.113 9 C 0.057 3.943 10 N -0.525 5.525 11 C 0.049 3.951 12 C 0.499 3.501 13 O -0.573 6.573 14 N -0.603 5.603 15 C 0.097 3.903 16 C -0.160 4.160 17 C 0.228 3.772 18 C -0.531 4.531 19 H 0.027 0.973 20 C 0.010 3.990 21 N -0.945 5.945 22 Si 0.947 3.053 23 H -0.276 1.276 24 H -0.277 1.277 25 H -0.239 1.239 26 C 0.031 3.969 27 C 0.115 3.885 28 H 0.074 0.926 29 O -0.574 6.574 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.048 0.952 33 H 0.111 0.889 34 H 0.120 0.880 35 H 0.414 0.586 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.040 0.960 40 H 0.073 0.927 41 H 0.136 0.864 42 H 0.069 0.931 43 H 0.093 0.907 44 H 0.045 0.955 45 H 0.092 0.908 46 H 0.064 0.936 47 H 0.045 0.955 48 H 0.018 0.982 49 H 0.268 0.732 50 H 0.066 0.934 51 H 0.032 0.968 52 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.928 -8.783 13.705 24.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.177 4.177 3 C 0.294 3.706 4 O -0.470 6.470 5 N -0.362 5.362 6 C 0.052 3.948 7 H 0.081 0.919 8 C -0.151 4.151 9 C -0.070 4.070 10 N -0.252 5.252 11 C -0.081 4.081 12 C 0.287 3.713 13 O -0.452 6.452 14 N -0.335 5.335 15 C -0.025 4.025 16 C -0.218 4.218 17 C 0.105 3.895 18 C -0.570 4.570 19 H 0.046 0.954 20 C -0.188 4.188 21 N -0.585 5.585 22 Si 0.770 3.230 23 H -0.201 1.201 24 H -0.202 1.202 25 H -0.162 1.162 26 C -0.098 4.098 27 C 0.055 3.945 28 H 0.092 0.908 29 O -0.382 6.382 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.130 0.870 34 H 0.138 0.862 35 H 0.250 0.750 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.126 0.874 39 H 0.058 0.942 40 H 0.091 0.909 41 H 0.154 0.846 42 H 0.088 0.912 43 H 0.111 0.889 44 H 0.065 0.935 45 H 0.111 0.889 46 H 0.083 0.917 47 H 0.063 0.937 48 H 0.036 0.964 49 H 0.077 0.923 50 H 0.084 0.916 51 H 0.050 0.950 52 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -18.454 -9.086 13.839 24.791 hybrid contribution 1.559 0.512 -1.242 2.058 sum -16.895 -8.574 12.597 22.752 Atomic orbital electron populations 1.21530 0.93505 1.02590 1.01807 1.21695 0.98149 0.91353 1.06525 1.21533 0.81757 0.93091 0.74222 1.90671 1.56326 1.48274 1.51713 1.45922 1.07394 1.08250 1.74616 1.20866 0.92958 0.84281 0.96724 0.91858 1.21852 1.01878 0.96482 0.94937 1.22216 0.86703 0.96767 1.01349 1.61495 1.20719 1.25713 1.17240 1.22034 0.90098 0.91052 1.04923 1.21091 0.89571 0.83643 0.76968 1.90610 1.74804 1.28664 1.51116 1.48075 1.10805 1.07296 1.67304 1.21767 0.99263 0.83607 0.97849 1.22151 1.02217 1.03089 0.94315 1.19252 0.79801 0.96828 0.93617 1.21535 0.93222 1.50118 0.92115 0.95449 1.25839 1.02543 0.94083 0.96300 1.70050 1.24890 1.51905 1.11701 0.85726 0.78314 0.78932 0.80047 1.20137 1.20200 1.16244 1.22714 1.00940 0.96666 0.89499 1.21853 0.95657 0.93740 0.83208 0.90842 1.86442 1.37735 1.88951 1.25036 0.93916 0.89633 0.93261 0.87040 0.86175 0.74988 0.89999 0.89726 0.87378 0.94208 0.90886 0.84588 0.91228 0.88911 0.93537 0.88907 0.91673 0.93685 0.96359 0.92345 0.91567 0.95010 0.75580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.20 71.98 0.66 -1.22 16 2 C -0.14 -1.66 6.42 29.85 0.19 -1.47 16 3 C 0.51 10.60 7.79 87.66 0.68 11.28 16 4 O -0.59 -17.57 15.65 -3.02 -0.05 -17.62 16 5 N -0.71 -13.51 4.99 -442.14 -2.21 -15.72 16 6 C 0.16 3.63 2.20 45.07 0.10 3.73 16 7 H 0.06 1.83 7.59 -2.39 -0.02 1.81 16 8 C -0.11 -2.20 5.67 30.65 0.17 -2.03 16 9 C 0.06 1.12 5.46 86.33 0.47 1.59 16 10 N -0.53 -13.80 4.35 -900.90 -3.92 -17.72 16 11 C 0.05 1.29 4.18 85.56 0.36 1.65 16 12 C 0.50 19.11 7.21 87.66 0.63 19.74 16 13 O -0.57 -27.17 14.28 -3.03 -0.04 -27.21 16 14 N -0.60 -23.41 2.46 -826.14 -2.03 -25.44 16 15 C 0.10 2.71 5.96 86.38 0.51 3.23 16 16 C -0.16 -3.27 10.24 71.98 0.74 -2.53 16 17 C 0.23 10.85 4.23 85.63 0.36 11.21 16 18 C -0.53 -30.79 9.94 25.60 0.25 -30.54 16 19 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 20 C 0.01 0.60 5.47 84.66 0.46 1.06 16 21 N -0.95 -59.33 13.96 21.45 0.30 -59.03 16 22 Si 0.95 44.10 27.47 68.60 1.88 45.99 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 26 C 0.03 0.92 4.74 86.32 0.41 1.33 16 27 C 0.12 2.89 3.14 30.65 0.10 2.98 16 28 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 29 O -0.57 -14.70 13.23 -148.98 -1.97 -16.68 16 30 H 0.04 0.74 8.10 -2.38 -0.02 0.72 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 0.79 8.10 -2.38 -0.02 0.77 16 33 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.12 0.81 8.14 -2.39 -0.02 0.80 16 35 H 0.41 5.79 8.60 -92.71 -0.80 4.99 16 36 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 37 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.11 1.60 8.01 -2.39 -0.02 1.58 16 39 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.07 1.74 7.05 -2.39 -0.02 1.73 16 41 H 0.14 2.61 7.25 -2.39 -0.02 2.59 16 42 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 43 H 0.09 2.07 6.27 -2.39 -0.01 2.06 16 44 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 46 H 0.06 1.18 7.41 -2.39 -0.02 1.16 16 47 H 0.05 2.00 7.13 -2.38 -0.02 1.98 16 48 H 0.02 0.94 6.85 -2.39 -0.02 0.92 16 49 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 50 H 0.07 2.49 6.05 -2.39 -0.01 2.48 16 51 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.39 8.39 9.08 -74.05 -0.67 7.72 16 Total: -1.00 -83.37 412.32 -2.53 -85.90 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: -0.60 Total: 27.50 kcal Atomic # 6 Polarization: 13.92 SS G_CDS: 6.11 Total: 20.02 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -7.86 Total: -117.91 kcal Atomic # 8 Polarization: -59.44 SS G_CDS: -2.06 Total: -61.51 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.88 Total: 45.99 kcal Total: -83.37 -2.53 -85.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099613890.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.100 kcal (2) G-P(sol) polarization free energy of solvation -83.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds