Wall clock time and date at job start Wed Apr 1 2020 01:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42903 * 113.99838 * 2 1 4 4 C 1.53000 * 109.46726 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47466 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00011 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00369 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00115 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.46784 * 179.97438 * 9 8 6 11 11 H 1.08998 * 110.63920 * 56.69992 * 10 9 8 12 12 C 1.54933 * 110.72480 * 293.54415 * 10 9 8 13 13 N 1.48537 * 103.22517 * 204.22829 * 12 10 9 14 14 C 1.46897 * 110.99674 * 159.72213 * 13 12 10 15 15 C 1.50703 * 109.47105 * 170.00084 * 14 13 12 16 16 O 1.21289 * 119.99698 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00222 * 179.97438 * 15 14 13 18 18 C 1.37095 * 120.00307 * 179.97438 * 17 15 14 19 19 H 1.08005 * 119.99879 * 0.02562 * 18 17 15 20 20 C 1.38945 * 120.00368 * 180.02562 * 18 17 15 21 21 N 1.31410 * 120.00245 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00033 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47244 * 89.99653 * 22 20 18 24 24 H 1.48502 * 109.47308 * 210.00014 * 22 20 18 25 25 H 1.48505 * 109.47163 * 329.99785 * 22 20 18 26 26 C 1.47903 * 105.81802 * 39.20981 * 13 12 10 27 27 C 1.53996 * 107.05754 * 334.66722 * 26 13 12 28 28 H 1.09002 * 110.30713 * 120.14379 * 27 26 13 29 29 C 1.53001 * 110.30856 * 242.30927 * 27 26 13 30 30 H 1.09004 * 109.46885 * 300.00332 * 1 2 3 31 31 H 1.08996 * 109.46933 * 60.00042 * 1 2 3 32 32 H 1.08996 * 109.46843 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46938 * 60.00058 * 3 2 1 34 34 H 1.08992 * 109.47388 * 300.00049 * 3 2 1 35 35 H 1.09002 * 109.47398 * 300.00244 * 4 3 2 36 36 H 1.09001 * 109.47194 * 60.00425 * 4 3 2 37 37 H 1.09002 * 109.47153 * 300.00319 * 5 4 3 38 38 H 1.08998 * 109.47533 * 59.99948 * 5 4 3 39 39 H 0.97003 * 119.99640 * 0.02562 * 8 6 5 40 40 H 1.09002 * 109.46801 * 299.99526 * 9 8 6 41 41 H 1.08992 * 109.46823 * 59.99976 * 9 8 6 42 42 H 1.08997 * 110.66613 * 322.66298 * 12 10 9 43 43 H 1.09000 * 110.66377 * 85.79913 * 12 10 9 44 44 H 1.09006 * 109.47171 * 290.00154 * 14 13 12 45 45 H 1.08998 * 109.47298 * 50.00126 * 14 13 12 46 46 H 0.97002 * 119.99922 * 0.02562 * 17 15 14 47 47 H 0.97004 * 119.99995 * 180.02562 * 21 20 18 48 48 H 1.09006 * 109.91823 * 94.02148 * 26 13 12 49 49 H 1.08997 * 109.91184 * 215.31531 * 26 13 12 50 50 H 1.08995 * 109.47256 * 175.72250 * 29 27 26 51 51 H 1.08997 * 109.47073 * 295.71961 * 29 27 26 52 52 H 1.08998 * 109.46931 * 55.71199 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 6 5.6601 2.4634 0.0013 7 8 6.1817 1.3684 0.0004 8 7 6.4241 3.5737 0.0023 9 6 7.8845 3.4580 0.0018 10 6 8.5068 4.8558 0.0025 11 1 8.1517 5.4339 0.8556 12 6 8.2005 5.5930 -1.3253 13 7 9.3023 6.5842 -1.4256 14 6 9.4707 7.0456 -2.8100 15 6 10.4178 8.2176 -2.8372 16 8 10.9049 8.6277 -1.8048 17 7 10.7244 8.8092 -4.0086 18 6 11.5856 9.8757 -4.0332 19 1 12.0187 10.2414 -3.1139 20 6 11.9013 10.4860 -5.2409 21 7 12.7271 11.5079 -5.2646 22 14 11.1517 9.8540 -6.8309 23 1 9.8731 10.5629 -7.0915 24 1 12.0920 10.1002 -7.9536 25 1 10.8941 8.3964 -6.7115 26 6 10.5162 5.8875 -0.9476 27 6 10.0502 4.7674 0.0009 28 1 10.3731 3.7959 -0.3734 29 6 10.5971 5.0032 1.4102 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6887 1.8464 -0.8899 35 1 3.8568 0.6438 0.8908 36 1 3.8575 0.6436 -0.8892 37 1 3.8366 3.1235 -0.8887 38 1 3.8359 3.1231 0.8912 39 1 6.0069 4.4494 0.0035 40 1 8.2064 2.9161 0.8911 41 1 8.2058 2.9181 -0.8889 42 1 8.2292 4.8996 -2.1657 43 1 7.2347 6.0955 -1.2724 44 1 9.8772 6.2358 -3.4160 45 1 8.5043 7.3502 -3.2117 46 1 10.3352 8.4810 -4.8342 47 1 12.9472 11.9343 -6.1076 48 1 11.0550 5.4584 -1.7925 49 1 11.1579 6.5859 -0.4105 50 1 10.1983 4.2468 2.0861 51 1 11.6850 4.9380 1.3934 52 1 10.2979 5.9929 1.7551 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101763902.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:25:09 Heat of formation + Delta-G solvation = -123.020276 kcal Electronic energy + Delta-G solvation = -29252.257216 eV Core-core repulsion = 25058.534487 eV Total energy + Delta-G solvation = -4193.722729 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.28403 -39.43409 -38.35691 -37.95579 -35.25252 -34.05817 -33.98012 -33.17236 -31.64326 -30.53874 -28.56343 -27.74124 -26.44707 -25.79526 -24.80312 -23.22892 -22.24398 -21.01068 -20.85096 -19.92582 -19.26838 -18.24734 -17.55967 -16.84696 -16.69930 -16.44662 -15.98764 -15.88401 -15.46070 -15.38536 -15.11594 -14.80237 -14.53717 -14.06182 -13.87425 -13.75119 -13.67774 -13.39703 -12.99582 -12.93226 -12.57980 -12.50111 -12.39533 -12.30550 -12.20318 -12.15883 -11.77474 -11.52539 -11.49260 -11.36593 -11.30249 -11.07894 -10.90505 -10.74991 -10.63129 -10.59417 -10.14588 -10.12037 -9.97656 -9.55678 -9.37056 -8.62966 -8.17832 -8.06567 -6.30864 -3.82154 2.34019 2.75155 3.01772 3.06058 3.14405 3.37009 3.74614 3.90594 4.10098 4.28354 4.41382 4.47825 4.49742 4.57428 4.61868 4.80255 4.82455 4.88314 4.93398 4.93784 4.98797 5.08643 5.13082 5.13946 5.20298 5.21448 5.23545 5.42122 5.44033 5.53808 5.57863 5.60697 5.65907 5.69602 5.75820 5.81826 5.89180 5.93487 5.97817 6.06454 6.14190 6.24077 6.42052 6.68297 7.06152 7.09013 7.16842 7.58800 7.91359 8.14781 8.60930 8.95904 9.43019 9.84603 10.82370 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014347 B = 0.001753 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.168443 B =15966.570033 C =17508.997718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.392 6.392 3 C 0.060 3.940 4 C -0.105 4.105 5 C -0.139 4.139 6 C 0.512 3.488 7 O -0.540 6.540 8 N -0.729 5.729 9 C 0.129 3.871 10 C -0.100 4.100 11 H 0.093 0.907 12 C 0.037 3.963 13 N -0.490 5.490 14 C 0.033 3.967 15 C 0.454 3.546 16 O -0.558 6.558 17 N -0.593 5.593 18 C -0.304 4.304 19 H 0.119 0.881 20 C 0.041 3.959 21 N -0.882 5.882 22 Si 0.879 3.121 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C 0.047 3.953 27 C -0.094 4.094 28 H 0.075 0.925 29 C -0.141 4.141 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.402 0.598 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.051 0.949 45 H 0.089 0.911 46 H 0.369 0.631 47 H 0.273 0.727 48 H 0.040 0.960 49 H 0.096 0.904 50 H 0.052 0.948 51 H 0.057 0.943 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.255 -19.861 9.560 30.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.016 4.016 4 C -0.142 4.142 5 C -0.179 4.179 6 C 0.298 3.702 7 O -0.417 6.417 8 N -0.382 5.382 9 C 0.006 3.994 10 C -0.119 4.119 11 H 0.111 0.889 12 C -0.091 4.091 13 N -0.213 5.213 14 C -0.098 4.098 15 C 0.239 3.761 16 O -0.439 6.439 17 N -0.233 5.233 18 C -0.432 4.432 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.522 5.522 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 C -0.081 4.081 27 C -0.114 4.114 28 H 0.094 0.906 29 C -0.198 4.198 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.237 0.763 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.098 0.902 44 H 0.069 0.931 45 H 0.107 0.893 46 H 0.202 0.798 47 H 0.083 0.917 48 H 0.059 0.941 49 H 0.114 0.886 50 H 0.071 0.929 51 H 0.076 0.924 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.394 -19.892 10.442 30.342 hybrid contribution -0.743 -0.259 -2.092 2.236 sum -21.137 -20.151 8.350 30.374 Atomic orbital electron populations 1.22754 0.80885 1.02887 1.00005 1.87894 1.19794 1.27960 1.95421 1.22555 0.94037 0.84792 1.00242 1.21217 0.92195 0.95789 1.05046 1.21551 0.92041 0.99499 1.04784 1.20591 0.89476 0.84218 0.75866 1.90731 1.75169 1.26635 1.49119 1.46053 1.07266 1.09112 1.75735 1.21414 0.78905 0.96665 1.02458 1.22410 0.95897 0.94557 0.99057 0.88881 1.23325 0.96291 0.93492 0.96016 1.64461 1.04039 1.33213 1.19629 1.22116 1.00415 0.97432 0.89883 1.19615 0.85866 0.86184 0.84394 1.90551 1.55340 1.65734 1.32245 1.42209 1.43367 1.30907 1.06846 1.19421 1.20859 1.05812 0.97155 0.86298 1.25021 0.96992 0.96261 0.97861 1.69621 1.33979 1.21480 1.27170 0.86682 0.79873 0.78940 0.83929 1.19637 1.20208 1.19595 1.22998 0.92955 0.94606 0.97543 1.21997 0.93389 0.99016 0.96975 0.90649 1.21821 1.01022 1.02009 0.94990 0.94025 0.94012 0.89552 0.93202 0.93167 0.90259 0.90234 0.88551 0.88580 0.76318 0.91159 0.91403 0.93758 0.90195 0.93140 0.89308 0.79799 0.91651 0.94116 0.88601 0.92921 0.92363 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.31 10.70 -35.23 -0.38 -3.69 16 3 C 0.06 0.37 5.94 37.16 0.22 0.59 16 4 C -0.10 -0.76 4.87 -26.73 -0.13 -0.89 16 5 C -0.14 -0.75 5.70 -27.89 -0.16 -0.91 16 6 C 0.51 4.56 7.83 -10.99 -0.09 4.48 16 7 O -0.54 -7.19 15.98 5.56 0.09 -7.10 16 8 N -0.73 -5.34 5.40 -60.29 -0.33 -5.67 16 9 C 0.13 1.12 4.99 -4.04 -0.02 1.10 16 10 C -0.10 -0.92 2.67 -88.76 -0.24 -1.16 16 11 H 0.09 0.85 7.87 -51.93 -0.41 0.44 16 12 C 0.04 0.39 5.66 -1.90 -0.01 0.38 16 13 N -0.49 -7.41 4.91 -231.89 -1.14 -8.55 16 14 C 0.03 0.55 5.27 -4.98 -0.03 0.52 16 15 C 0.45 10.21 7.61 -10.99 -0.08 10.13 16 16 O -0.56 -14.77 14.87 5.55 0.08 -14.69 16 17 N -0.59 -14.06 5.09 -10.97 -0.06 -14.12 16 18 C -0.30 -8.56 10.16 -14.94 -0.15 -8.71 16 19 H 0.12 3.83 7.39 -52.48 -0.39 3.45 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 21 N -0.88 -25.72 13.96 55.50 0.77 -24.95 16 22 Si 0.88 19.30 27.74 -169.99 -4.71 14.59 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 26 C 0.05 0.68 5.53 -2.75 -0.02 0.67 16 27 C -0.09 -1.01 3.17 -89.26 -0.28 -1.29 16 28 H 0.08 0.75 7.85 -51.93 -0.41 0.34 16 29 C -0.14 -1.42 8.89 37.16 0.33 -1.09 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.40 1.99 8.33 -40.82 -0.34 1.65 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 42 H 0.04 0.46 7.89 -51.93 -0.41 0.05 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.75 7.73 -51.93 -0.40 0.34 16 45 H 0.09 1.26 8.08 -51.93 -0.42 0.84 16 46 H 0.37 7.69 5.76 -40.82 -0.24 7.45 16 47 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 48 H 0.04 0.61 7.52 -51.93 -0.39 0.22 16 49 H 0.10 1.68 7.07 -51.93 -0.37 1.31 16 50 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 419.98 15.07 6.33 6.33 Total: -1.00 -35.79 419.98 -8.24 -44.03 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -9.27 Total: 7.67 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 0.37 Total: 6.13 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.75 Total: -53.28 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.21 Total: -25.47 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.71 Total: 14.59 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -35.79 -8.24 -44.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101763902.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.987 kcal (2) G-P(sol) polarization free energy of solvation -35.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds