Wall clock time and date at job start Wed Apr 1 2020 01:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42903 * 113.99838 * 2 1 4 4 C 1.53000 * 109.46726 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47466 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00011 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00369 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00115 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.46784 * 179.97438 * 9 8 6 11 11 H 1.08998 * 110.63920 * 56.69992 * 10 9 8 12 12 C 1.54933 * 110.72480 * 293.54415 * 10 9 8 13 13 N 1.48537 * 103.22517 * 204.22829 * 12 10 9 14 14 C 1.46897 * 110.99674 * 159.72213 * 13 12 10 15 15 C 1.50703 * 109.47105 * 170.00084 * 14 13 12 16 16 O 1.21289 * 119.99698 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00222 * 179.97438 * 15 14 13 18 18 C 1.37095 * 120.00307 * 179.97438 * 17 15 14 19 19 H 1.08005 * 119.99879 * 0.02562 * 18 17 15 20 20 C 1.38945 * 120.00368 * 180.02562 * 18 17 15 21 21 N 1.31410 * 120.00245 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00033 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47244 * 89.99653 * 22 20 18 24 24 H 1.48502 * 109.47308 * 210.00014 * 22 20 18 25 25 H 1.48505 * 109.47163 * 329.99785 * 22 20 18 26 26 C 1.47903 * 105.81802 * 39.20981 * 13 12 10 27 27 C 1.53996 * 107.05754 * 334.66722 * 26 13 12 28 28 H 1.09002 * 110.30713 * 120.14379 * 27 26 13 29 29 C 1.53001 * 110.30856 * 242.30927 * 27 26 13 30 30 H 1.09004 * 109.46885 * 300.00332 * 1 2 3 31 31 H 1.08996 * 109.46933 * 60.00042 * 1 2 3 32 32 H 1.08996 * 109.46843 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46938 * 60.00058 * 3 2 1 34 34 H 1.08992 * 109.47388 * 300.00049 * 3 2 1 35 35 H 1.09002 * 109.47398 * 300.00244 * 4 3 2 36 36 H 1.09001 * 109.47194 * 60.00425 * 4 3 2 37 37 H 1.09002 * 109.47153 * 300.00319 * 5 4 3 38 38 H 1.08998 * 109.47533 * 59.99948 * 5 4 3 39 39 H 0.97003 * 119.99640 * 0.02562 * 8 6 5 40 40 H 1.09002 * 109.46801 * 299.99526 * 9 8 6 41 41 H 1.08992 * 109.46823 * 59.99976 * 9 8 6 42 42 H 1.08997 * 110.66613 * 322.66298 * 12 10 9 43 43 H 1.09000 * 110.66377 * 85.79913 * 12 10 9 44 44 H 1.09006 * 109.47171 * 290.00154 * 14 13 12 45 45 H 1.08998 * 109.47298 * 50.00126 * 14 13 12 46 46 H 0.97002 * 119.99922 * 0.02562 * 17 15 14 47 47 H 0.97004 * 119.99995 * 180.02562 * 21 20 18 48 48 H 1.09006 * 109.91823 * 94.02148 * 26 13 12 49 49 H 1.08997 * 109.91184 * 215.31531 * 26 13 12 50 50 H 1.08995 * 109.47256 * 175.72250 * 29 27 26 51 51 H 1.08997 * 109.47073 * 295.71961 * 29 27 26 52 52 H 1.08998 * 109.46931 * 55.71199 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 6 5.6601 2.4634 0.0013 7 8 6.1817 1.3684 0.0004 8 7 6.4241 3.5737 0.0023 9 6 7.8845 3.4580 0.0018 10 6 8.5068 4.8558 0.0025 11 1 8.1517 5.4339 0.8556 12 6 8.2005 5.5930 -1.3253 13 7 9.3023 6.5842 -1.4256 14 6 9.4707 7.0456 -2.8100 15 6 10.4178 8.2176 -2.8372 16 8 10.9049 8.6277 -1.8048 17 7 10.7244 8.8092 -4.0086 18 6 11.5856 9.8757 -4.0332 19 1 12.0187 10.2414 -3.1139 20 6 11.9013 10.4860 -5.2409 21 7 12.7271 11.5079 -5.2646 22 14 11.1517 9.8540 -6.8309 23 1 9.8731 10.5629 -7.0915 24 1 12.0920 10.1002 -7.9536 25 1 10.8941 8.3964 -6.7115 26 6 10.5162 5.8875 -0.9476 27 6 10.0502 4.7674 0.0009 28 1 10.3731 3.7959 -0.3734 29 6 10.5971 5.0032 1.4102 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6887 1.8464 -0.8899 35 1 3.8568 0.6438 0.8908 36 1 3.8575 0.6436 -0.8892 37 1 3.8366 3.1235 -0.8887 38 1 3.8359 3.1231 0.8912 39 1 6.0069 4.4494 0.0035 40 1 8.2064 2.9161 0.8911 41 1 8.2058 2.9181 -0.8889 42 1 8.2292 4.8996 -2.1657 43 1 7.2347 6.0955 -1.2724 44 1 9.8772 6.2358 -3.4160 45 1 8.5043 7.3502 -3.2117 46 1 10.3352 8.4810 -4.8342 47 1 12.9472 11.9343 -6.1076 48 1 11.0550 5.4584 -1.7925 49 1 11.1579 6.5859 -0.4105 50 1 10.1983 4.2468 2.0861 51 1 11.6850 4.9380 1.3934 52 1 10.2979 5.9929 1.7551 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101763902.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:25:08 Heat of formation + Delta-G solvation = -152.528790 kcal Electronic energy + Delta-G solvation = -29253.536801 eV Core-core repulsion = 25058.534487 eV Total energy + Delta-G solvation = -4195.002314 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.12223 -40.54053 -39.53513 -38.82241 -36.23570 -35.80437 -34.61034 -34.23720 -33.69581 -31.35574 -29.49091 -28.65817 -27.16840 -26.77131 -26.13235 -24.34902 -22.88219 -21.89774 -21.59658 -21.26942 -20.73451 -20.03163 -18.21152 -17.69616 -17.40442 -17.29109 -17.13600 -16.80267 -16.56651 -16.33801 -16.17075 -15.75688 -15.56025 -15.29857 -15.12933 -14.72871 -14.67181 -14.45896 -14.36735 -14.11380 -13.77014 -13.66748 -13.44630 -13.02157 -13.01567 -12.96930 -12.80613 -12.59915 -12.42571 -12.41576 -12.22384 -11.98196 -11.95295 -11.85572 -11.76198 -11.64277 -11.54453 -11.48625 -10.86037 -10.58888 -10.40548 -10.23200 -10.05090 -9.29392 -8.40588 -6.01242 1.29841 1.35452 1.44130 1.69882 1.97951 2.17428 2.23146 2.65913 2.93398 3.14841 3.25642 3.56161 3.61354 3.79762 3.85826 4.02221 4.14811 4.18443 4.20719 4.30529 4.36347 4.38973 4.44175 4.46081 4.50634 4.54553 4.56463 4.60454 4.61020 4.66556 4.68113 4.75578 4.83272 4.88234 4.89542 5.04538 5.12984 5.15401 5.19083 5.25579 5.27091 5.42384 5.50691 5.53725 5.89903 5.96794 6.07036 6.27859 6.60812 6.61289 6.89859 7.31567 7.41346 7.99334 8.77185 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014347 B = 0.001753 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.168443 B =15966.570033 C =17508.997718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.426 6.426 3 C 0.060 3.940 4 C -0.102 4.102 5 C -0.128 4.128 6 C 0.508 3.492 7 O -0.591 6.591 8 N -0.717 5.717 9 C 0.138 3.862 10 C -0.084 4.084 11 H 0.098 0.902 12 C 0.040 3.960 13 N -0.515 5.515 14 C 0.046 3.954 15 C 0.451 3.549 16 O -0.606 6.606 17 N -0.594 5.594 18 C -0.327 4.327 19 H 0.054 0.946 20 C -0.015 4.015 21 N -0.936 5.936 22 Si 0.965 3.035 23 H -0.256 1.256 24 H -0.276 1.276 25 H -0.233 1.233 26 C 0.046 3.954 27 C -0.088 4.088 28 H 0.088 0.912 29 C -0.138 4.138 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.417 0.583 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.102 0.898 44 H 0.076 0.924 45 H 0.123 0.877 46 H 0.389 0.611 47 H 0.279 0.721 48 H 0.034 0.966 49 H 0.054 0.946 50 H 0.072 0.928 51 H 0.052 0.948 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.869 -21.475 8.085 33.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.346 6.346 3 C -0.016 4.016 4 C -0.141 4.141 5 C -0.168 4.168 6 C 0.296 3.704 7 O -0.472 6.472 8 N -0.370 5.370 9 C 0.014 3.986 10 C -0.104 4.104 11 H 0.117 0.883 12 C -0.087 4.087 13 N -0.239 5.239 14 C -0.086 4.086 15 C 0.239 3.761 16 O -0.490 6.490 17 N -0.236 5.236 18 C -0.457 4.457 19 H 0.072 0.928 20 C -0.213 4.213 21 N -0.576 5.576 22 Si 0.785 3.215 23 H -0.180 1.180 24 H -0.201 1.201 25 H -0.156 1.156 26 C -0.082 4.082 27 C -0.108 4.108 28 H 0.106 0.894 29 C -0.196 4.196 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.255 0.745 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.121 0.879 44 H 0.094 0.906 45 H 0.141 0.859 46 H 0.224 0.776 47 H 0.088 0.912 48 H 0.052 0.948 49 H 0.073 0.927 50 H 0.091 0.909 51 H 0.071 0.929 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -24.045 -21.495 8.983 33.480 hybrid contribution 0.442 0.289 -1.483 1.575 sum -23.603 -21.206 7.500 32.604 Atomic orbital electron populations 1.22911 0.79426 1.03642 1.01042 1.87849 1.21571 1.29489 1.95677 1.22632 0.92869 0.84304 1.01799 1.21159 0.93448 0.96655 1.02811 1.21555 0.89104 0.98721 1.07409 1.21212 0.90932 0.83565 0.74653 1.90718 1.76277 1.28608 1.51568 1.45939 1.06611 1.09646 1.74781 1.21215 0.79754 0.95774 1.01886 1.22270 0.94493 0.94808 0.98786 0.88330 1.23443 0.95446 0.92919 0.96900 1.64364 1.05246 1.35348 1.18952 1.22028 1.00037 0.95070 0.91462 1.20926 0.85291 0.86774 0.83113 1.90537 1.57030 1.67367 1.34053 1.42042 1.43148 1.30152 1.08296 1.18993 1.22864 1.08251 0.95544 0.92766 1.26091 0.96952 0.95895 1.02373 1.69807 1.35738 1.23244 1.28847 0.85370 0.78991 0.80417 0.76761 1.17997 1.20133 1.15632 1.22897 0.92782 0.94745 0.97775 1.21951 0.94680 0.97933 0.96239 0.89418 1.21788 1.00819 1.01836 0.95122 0.92908 0.92975 0.89115 0.91492 0.91555 0.92514 0.92583 0.85797 0.85757 0.74532 0.91650 0.92242 0.92543 0.87947 0.90636 0.85942 0.77592 0.91202 0.94788 0.92741 0.90876 0.92926 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.43 -6.75 10.70 -148.98 -1.59 -8.34 16 3 C 0.06 0.62 5.94 71.98 0.43 1.04 16 4 C -0.10 -1.38 4.87 30.59 0.15 -1.23 16 5 C -0.13 -0.99 5.70 29.85 0.17 -0.82 16 6 C 0.51 7.91 7.83 87.66 0.69 8.59 16 7 O -0.59 -15.36 15.98 -3.04 -0.05 -15.41 16 8 N -0.72 -8.17 5.40 -463.05 -2.50 -10.67 16 9 C 0.14 2.04 4.99 86.38 0.43 2.47 16 10 C -0.08 -1.33 2.67 -9.59 -0.03 -1.35 16 11 H 0.10 1.50 7.87 -2.39 -0.02 1.49 16 12 C 0.04 0.70 5.66 86.65 0.49 1.19 16 13 N -0.51 -14.65 4.91 -887.55 -4.36 -19.00 16 14 C 0.05 1.37 5.27 85.56 0.45 1.82 16 15 C 0.45 20.36 7.61 87.66 0.67 21.03 16 16 O -0.61 -33.66 14.87 -3.06 -0.05 -33.70 16 17 N -0.59 -28.01 5.09 -306.99 -1.56 -29.58 16 18 C -0.33 -19.23 10.16 84.04 0.85 -18.37 16 19 H 0.05 3.80 7.39 -2.91 -0.02 3.78 16 20 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 21 N -0.94 -56.52 13.96 21.66 0.30 -56.22 16 22 Si 0.96 38.67 27.74 68.60 1.90 40.57 16 23 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 24 H -0.28 -11.03 7.11 99.48 0.71 -10.33 16 25 H -0.23 -7.86 6.52 99.48 0.65 -7.22 16 26 C 0.05 1.35 5.53 86.45 0.48 1.82 16 27 C -0.09 -1.78 3.17 -9.92 -0.03 -1.82 16 28 H 0.09 1.58 7.85 -2.39 -0.02 1.56 16 29 C -0.14 -2.70 8.89 71.98 0.64 -2.06 16 30 H 0.05 0.32 8.14 -2.39 -0.02 0.31 16 31 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 36 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 37 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.42 2.31 8.33 -92.71 -0.77 1.53 16 40 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 42 H 0.06 0.91 7.89 -2.39 -0.02 0.89 16 43 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.08 1.95 7.73 -2.38 -0.02 1.93 16 45 H 0.12 2.91 8.08 -2.39 -0.02 2.89 16 46 H 0.39 15.11 5.76 -92.71 -0.53 14.58 16 47 H 0.28 15.37 8.31 -92.70 -0.77 14.60 16 48 H 0.03 1.01 7.52 -2.38 -0.02 0.99 16 49 H 0.05 2.02 7.07 -2.39 -0.02 2.00 16 50 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 51 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 52 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -86.53 419.98 -1.26 -87.79 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: -0.46 Total: 31.12 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 7.10 Total: 13.45 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -8.12 Total: -115.47 kcal Atomic # 8 Polarization: -55.77 SS G_CDS: -1.69 Total: -57.45 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 1.90 Total: 40.57 kcal Total: -86.53 -1.26 -87.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101763902.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.740 kcal (2) G-P(sol) polarization free energy of solvation -86.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds