Wall clock time and date at job start Wed Apr 1 2020 01:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47517 * 2 1 4 4 O 1.42902 * 109.46922 * 120.00057 * 2 1 3 5 5 C 1.42898 * 114.00186 * 149.99499 * 4 2 1 6 6 C 1.50703 * 109.47171 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99985 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00161 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00271 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47194 * 179.97438 * 9 8 6 11 11 H 1.09003 * 110.64692 * 56.69359 * 10 9 8 12 12 C 1.54941 * 110.72258 * 293.54454 * 10 9 8 13 13 N 1.48537 * 103.22559 * 204.22871 * 12 10 9 14 14 C 1.46898 * 110.99901 * 159.72219 * 13 12 10 15 15 C 1.50696 * 109.47200 * 170.00195 * 14 13 12 16 16 O 1.21292 * 119.99984 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00098 * 180.02562 * 15 14 13 18 18 C 1.37095 * 119.99975 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00228 * 359.97438 * 18 17 15 20 20 C 1.38957 * 120.00187 * 179.97438 * 18 17 15 21 21 N 1.31413 * 119.99316 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00162 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47352 * 89.99756 * 22 20 18 24 24 H 1.48503 * 109.47015 * 209.99782 * 22 20 18 25 25 H 1.48502 * 109.46892 * 329.99550 * 22 20 18 26 26 C 1.47900 * 105.82203 * 39.20537 * 13 12 10 27 27 C 1.53996 * 107.05925 * 334.66939 * 26 13 12 28 28 H 1.09004 * 110.30754 * 120.13552 * 27 26 13 29 29 C 1.52993 * 110.31002 * 242.30520 * 27 26 13 30 30 H 1.09002 * 109.46774 * 300.00670 * 1 2 3 31 31 H 1.09005 * 109.47009 * 59.99463 * 1 2 3 32 32 H 1.08997 * 109.47502 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.46984 * 239.99465 * 2 1 3 34 34 H 1.08997 * 109.46833 * 60.00170 * 3 2 1 35 35 H 1.09001 * 109.46890 * 179.97438 * 3 2 1 36 36 H 1.09000 * 109.46986 * 299.99733 * 3 2 1 37 37 H 1.09002 * 109.47259 * 300.00293 * 5 4 2 38 38 H 1.09001 * 109.47074 * 60.00315 * 5 4 2 39 39 H 0.97005 * 119.99463 * 359.97438 * 8 6 5 40 40 H 1.09002 * 109.47021 * 299.99722 * 9 8 6 41 41 H 1.09001 * 109.47001 * 59.99554 * 9 8 6 42 42 H 1.08998 * 110.66681 * 322.66020 * 12 10 9 43 43 H 1.08999 * 110.66831 * 85.79464 * 12 10 9 44 44 H 1.09003 * 109.46942 * 290.00017 * 14 13 12 45 45 H 1.09002 * 109.47468 * 49.99764 * 14 13 12 46 46 H 0.96999 * 120.00183 * 359.97438 * 17 15 14 47 47 H 0.97009 * 119.99321 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.91628 * 94.02196 * 26 13 12 49 49 H 1.08997 * 109.91891 * 215.31807 * 26 13 12 50 50 H 1.09000 * 109.47065 * 175.71117 * 29 27 26 51 51 H 1.08998 * 109.47171 * 295.71827 * 29 27 26 52 52 H 1.08999 * 109.46980 * 55.71894 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2659 -1.3246 0.9887 6 6 3.6691 -1.9990 2.2747 7 8 2.9490 -1.9287 3.2480 8 7 4.8305 -2.6794 2.3434 9 6 5.2222 -3.3355 3.5933 10 6 6.5708 -4.0323 3.4026 11 1 7.3272 -3.3214 3.0700 12 6 6.4441 -5.2071 2.4003 13 7 7.5728 -6.0969 2.7751 14 6 7.3524 -7.4629 2.2820 15 6 8.6116 -8.2711 2.4614 16 8 9.5961 -7.7592 2.9513 17 7 8.6443 -9.5623 2.0764 18 6 9.7901 -10.2973 2.2391 19 1 10.6666 -9.8416 2.6754 20 6 9.8236 -11.6287 1.8427 21 7 8.7568 -12.1833 1.3124 22 14 11.3850 -12.6300 2.0638 23 1 11.3683 -13.2854 3.3962 24 1 11.4626 -13.6666 1.0032 25 1 12.5653 -11.7340 1.9676 26 6 7.6340 -6.0701 4.2526 27 6 7.0121 -4.7364 4.7064 28 1 6.1499 -4.9198 5.3477 29 6 8.0518 -3.8887 5.4421 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 3.1301 1.4424 0.0005 36 1 1.6768 1.9563 -0.8900 37 1 3.1807 -2.0708 0.1987 38 1 4.0199 -0.5876 0.7126 39 1 5.4066 -2.7354 1.5650 40 1 5.3067 -2.5899 4.3840 41 1 4.4682 -4.0730 3.8684 42 1 5.4910 -5.7203 2.5277 43 1 6.5575 -4.8526 1.3758 44 1 6.5408 -7.9254 2.8437 45 1 7.0895 -7.4296 1.2247 46 1 7.8572 -9.9715 1.6842 47 1 8.7801 -13.1129 1.0360 48 1 7.0646 -6.9040 4.6630 49 1 8.6713 -6.1272 4.5824 50 1 7.6203 -2.9188 5.6898 51 1 8.3529 -4.3971 6.3579 52 1 8.9227 -3.7461 4.8024 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101789973.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:25:26 Heat of formation + Delta-G solvation = -150.361377 kcal Electronic energy + Delta-G solvation = -29510.444267 eV Core-core repulsion = 25315.535939 eV Total energy + Delta-G solvation = -4194.908328 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.13506 -40.54497 -39.51270 -38.88639 -36.20446 -35.77747 -34.27255 -33.68849 -33.21871 -31.50126 -29.51108 -28.55250 -28.01078 -26.97005 -26.43960 -24.36576 -22.25397 -22.19328 -21.69843 -21.20514 -20.59278 -19.82954 -18.26930 -18.03241 -17.69968 -17.28879 -16.90311 -16.57720 -16.47131 -16.33454 -15.82164 -15.67269 -15.49139 -15.23241 -14.87076 -14.68651 -14.58632 -14.33102 -13.89409 -13.75554 -13.66891 -13.51671 -13.46055 -13.36789 -13.04785 -12.96591 -12.88504 -12.80649 -12.45928 -12.39396 -12.33779 -12.25774 -12.10606 -11.77464 -11.64757 -11.61991 -11.54445 -11.47742 -10.84551 -10.62322 -10.31965 -10.11372 -9.99923 -9.29247 -8.46053 -5.94558 1.37945 1.41503 1.54259 1.58562 1.83475 2.07176 2.28840 2.81401 3.01652 3.20531 3.38228 3.55652 3.61951 3.78511 3.86771 4.03880 4.11910 4.17559 4.24333 4.27214 4.30280 4.31396 4.36088 4.40597 4.42359 4.52768 4.60657 4.64517 4.68891 4.76615 4.78869 4.84423 4.88829 4.92924 4.95849 5.04343 5.12038 5.19252 5.25485 5.30535 5.34578 5.38527 5.41313 5.46618 5.87306 5.99630 6.11192 6.18247 6.56725 6.61855 7.14084 7.23720 7.57807 8.14076 8.71422 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017894 B = 0.001728 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.438228 B =16201.845977 C =17307.997351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.072 3.928 3 C -0.174 4.174 4 O -0.395 6.395 5 C 0.044 3.956 6 C 0.509 3.491 7 O -0.577 6.577 8 N -0.712 5.712 9 C 0.140 3.860 10 C -0.083 4.083 11 H 0.102 0.898 12 C 0.038 3.962 13 N -0.511 5.511 14 C 0.049 3.951 15 C 0.442 3.558 16 O -0.615 6.615 17 N -0.576 5.576 18 C -0.332 4.332 19 H 0.078 0.922 20 C -0.013 4.013 21 N -0.921 5.921 22 Si 0.992 3.008 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.273 1.273 26 C 0.047 3.953 27 C -0.088 4.088 28 H 0.086 0.914 29 C -0.137 4.137 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.418 0.582 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.101 0.899 44 H 0.065 0.935 45 H 0.112 0.888 46 H 0.395 0.605 47 H 0.277 0.723 48 H 0.029 0.971 49 H 0.058 0.942 50 H 0.073 0.927 51 H 0.053 0.947 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.008 23.849 -4.616 28.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.015 3.985 3 C -0.232 4.232 4 O -0.314 6.314 5 C -0.036 4.036 6 C 0.296 3.704 7 O -0.456 6.456 8 N -0.367 5.367 9 C 0.016 3.984 10 C -0.102 4.102 11 H 0.120 0.880 12 C -0.089 4.089 13 N -0.235 5.235 14 C -0.083 4.083 15 C 0.229 3.771 16 O -0.501 6.501 17 N -0.214 5.214 18 C -0.462 4.462 19 H 0.096 0.904 20 C -0.213 4.213 21 N -0.562 5.562 22 Si 0.816 3.184 23 H -0.197 1.197 24 H -0.195 1.195 25 H -0.198 1.198 26 C -0.081 4.081 27 C -0.108 4.108 28 H 0.105 0.895 29 C -0.195 4.195 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.256 0.744 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.119 0.881 44 H 0.083 0.917 45 H 0.130 0.870 46 H 0.229 0.771 47 H 0.086 0.914 48 H 0.048 0.952 49 H 0.077 0.923 50 H 0.092 0.908 51 H 0.072 0.928 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.510 24.213 -3.735 27.978 hybrid contribution 0.086 -1.578 -0.068 1.582 sum -13.424 22.635 -3.803 26.590 Atomic orbital electron populations 1.21897 0.93332 1.02595 1.03011 1.22397 0.95475 0.92983 0.87613 1.22305 1.01823 0.96116 1.02919 1.88033 1.35731 1.70363 1.37293 1.22388 0.88318 0.98336 0.94527 1.20873 0.80887 0.78479 0.90183 1.90719 1.53468 1.61682 1.39738 1.45769 1.21769 1.53353 1.15772 1.21243 0.94649 0.96106 0.86416 1.22274 0.96374 0.96575 0.94997 0.87977 1.23456 0.91930 0.92919 1.00641 1.64383 1.41478 1.07320 1.10320 1.21930 0.93763 0.89598 1.02962 1.20799 0.90989 0.82509 0.82808 1.90482 1.38520 1.71409 1.49667 1.41937 1.14158 1.09606 1.55721 1.19652 0.92701 0.93636 1.40215 0.90398 1.26023 1.01678 0.97495 0.96084 1.69678 1.29972 1.14665 1.41918 0.84935 0.77531 0.77627 0.78285 1.19743 1.19512 1.19789 1.22891 1.00527 0.96885 0.87774 1.21952 0.98819 0.93572 0.96427 0.89521 1.21783 0.98150 0.99700 0.99824 0.93028 0.88953 0.92563 0.89839 0.93138 0.91952 0.89726 0.87439 0.87554 0.74428 0.91270 0.92262 0.92974 0.88066 0.91688 0.87041 0.77106 0.91360 0.95214 0.92342 0.90826 0.92790 0.93015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.56 71.98 0.69 -0.98 16 2 C 0.07 0.82 3.34 30.59 0.10 0.92 16 3 C -0.17 -1.61 9.53 71.98 0.69 -0.93 16 4 O -0.39 -7.38 9.52 -129.94 -1.24 -8.62 16 5 C 0.04 0.54 6.23 71.24 0.44 0.98 16 6 C 0.51 9.75 7.91 87.66 0.69 10.45 16 7 O -0.58 -17.50 16.50 16.01 0.26 -17.24 16 8 N -0.71 -9.66 5.40 -463.07 -2.50 -12.16 16 9 C 0.14 2.30 4.99 86.38 0.43 2.74 16 10 C -0.08 -1.43 2.67 -9.59 -0.03 -1.45 16 11 H 0.10 1.64 7.87 -2.39 -0.02 1.62 16 12 C 0.04 0.76 5.66 86.65 0.49 1.25 16 13 N -0.51 -15.72 4.91 -887.57 -4.36 -20.07 16 14 C 0.05 1.68 5.27 85.56 0.45 2.13 16 15 C 0.44 21.10 7.61 87.66 0.67 21.77 16 16 O -0.62 -34.17 14.87 -3.07 -0.05 -34.21 16 17 N -0.58 -29.74 5.29 -306.99 -1.62 -31.36 16 18 C -0.33 -18.99 9.68 84.04 0.81 -18.17 16 19 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 20 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 21 N -0.92 -49.82 13.05 21.67 0.28 -49.54 16 22 Si 0.99 43.08 29.55 68.60 2.03 45.10 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 24 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 26 C 0.05 1.45 5.53 86.45 0.48 1.93 16 27 C -0.09 -1.88 3.17 -9.92 -0.03 -1.91 16 28 H 0.09 1.68 7.85 -2.39 -0.02 1.66 16 29 C -0.14 -2.71 8.89 71.98 0.64 -2.07 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.08 0.57 7.79 -2.39 -0.02 0.55 16 34 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.06 0.50 7.87 -2.39 -0.02 0.48 16 36 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.11 0.72 8.09 -2.39 -0.02 0.70 16 38 H 0.11 0.71 7.87 -2.39 -0.02 0.69 16 39 H 0.42 3.04 8.33 -92.70 -0.77 2.26 16 40 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 41 H 0.06 1.14 8.10 -2.39 -0.02 1.12 16 42 H 0.05 1.01 7.89 -2.39 -0.02 0.99 16 43 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.07 2.04 7.73 -2.39 -0.02 2.02 16 45 H 0.11 3.28 8.08 -2.39 -0.02 3.26 16 46 H 0.40 19.35 7.90 -92.71 -0.73 18.62 16 47 H 0.28 14.02 8.31 -92.70 -0.77 13.25 16 48 H 0.03 0.95 7.52 -2.39 -0.02 0.93 16 49 H 0.06 2.20 7.07 -2.39 -0.02 2.18 16 50 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 51 H 0.05 1.09 8.14 -2.39 -0.02 1.08 16 52 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -79.07 422.78 -0.79 -79.86 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: -0.59 Total: 31.83 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 6.99 Total: 16.41 kcal Atomic # 7 Polarization: -104.93 SS G_CDS: -8.20 Total: -113.13 kcal Atomic # 8 Polarization: -59.05 SS G_CDS: -1.02 Total: -60.07 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -79.07 -0.79 -79.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101789973.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.505 kcal (2) G-P(sol) polarization free energy of solvation -79.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds