Wall clock time and date at job start Wed Apr 1 2020 00:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 O 1.42905 * 109.46728 * 180.02562 * 3 2 1 5 5 C 1.42899 * 113.99778 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46785 * 179.97438 * 5 4 3 7 7 O 1.21276 * 120.00221 * 359.97438 * 6 5 4 8 8 N 1.34784 * 119.99728 * 179.97438 * 6 5 4 9 9 C 1.46501 * 119.99794 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47090 * 180.02562 * 9 8 6 11 11 H 1.09005 * 110.64227 * 56.69491 * 10 9 8 12 12 C 1.54938 * 110.72438 * 293.55123 * 10 9 8 13 13 N 1.48531 * 103.22587 * 204.22958 * 12 10 9 14 14 C 1.46895 * 111.00436 * 159.72048 * 13 12 10 15 15 C 1.50697 * 109.47605 * 169.99705 * 14 13 12 16 16 O 1.21290 * 119.99782 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00022 * 179.97438 * 15 14 13 18 18 C 1.37091 * 119.99937 * 179.97438 * 17 15 14 19 19 H 1.08005 * 119.99952 * 0.02562 * 18 17 15 20 20 C 1.38952 * 120.00400 * 180.02562 * 18 17 15 21 21 N 1.31409 * 120.00491 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99507 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47300 * 89.99795 * 22 20 18 24 24 H 1.48505 * 109.46891 * 209.99766 * 22 20 18 25 25 H 1.48504 * 109.47367 * 329.99832 * 22 20 18 26 26 C 1.47900 * 105.82089 * 39.20006 * 13 12 10 27 27 C 1.53987 * 107.06052 * 334.67105 * 26 13 12 28 28 H 1.09002 * 110.30550 * 120.14018 * 27 26 13 29 29 C 1.52993 * 110.31278 * 242.30633 * 27 26 13 30 30 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 31 31 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 33 33 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 34 34 H 1.09001 * 109.46611 * 119.99905 * 2 1 3 35 35 H 1.09000 * 109.47486 * 60.00167 * 3 2 1 36 36 H 1.09001 * 109.47362 * 299.99445 * 3 2 1 37 37 H 1.08997 * 109.47171 * 299.99768 * 5 4 3 38 38 H 1.08997 * 109.47442 * 59.99964 * 5 4 3 39 39 H 0.96996 * 119.99888 * 0.02562 * 8 6 5 40 40 H 1.08997 * 109.47293 * 300.00234 * 9 8 6 41 41 H 1.08997 * 109.46878 * 60.00159 * 9 8 6 42 42 H 1.09001 * 110.66473 * 322.65564 * 12 10 9 43 43 H 1.08996 * 110.66911 * 85.79312 * 12 10 9 44 44 H 1.09002 * 109.47169 * 289.99923 * 14 13 12 45 45 H 1.09005 * 109.46994 * 49.99075 * 14 13 12 46 46 H 0.96998 * 119.99861 * 0.02562 * 17 15 14 47 47 H 0.96993 * 120.00078 * 179.97438 * 21 20 18 48 48 H 1.09008 * 109.91439 * 94.03134 * 26 13 12 49 49 H 1.09004 * 109.91837 * 215.31278 * 26 13 12 50 50 H 1.09001 * 109.47512 * 175.72026 * 29 27 26 51 51 H 1.09007 * 109.47452 * 295.72034 * 29 27 26 52 52 H 1.09000 * 109.47171 * 55.71258 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0503 2.7479 -0.0012 6 6 5.5526 2.6288 -0.0012 7 8 6.0741 1.5339 -0.0002 8 7 6.3166 3.7392 -0.0023 9 6 7.7770 3.6234 -0.0017 10 6 8.3994 5.0211 -0.0025 11 1 8.0437 5.6006 0.8495 12 6 8.0940 5.7566 -1.3315 13 7 9.1958 6.7475 -1.4326 14 6 9.3653 7.2070 -2.8175 15 6 10.3124 8.3788 -2.8457 16 8 10.7988 8.7903 -1.8136 17 7 10.6197 8.9688 -4.0178 18 6 11.4810 10.0351 -4.0434 19 1 11.9135 10.4021 -3.1243 20 6 11.7975 10.6438 -5.2518 21 7 12.6226 11.6663 -5.2762 22 14 11.0488 10.0095 -6.8413 23 1 9.7705 10.7181 -7.1037 24 1 11.9899 10.2541 -7.9638 25 1 10.7910 8.5521 -6.7201 26 6 10.4093 6.0514 -0.9528 27 6 9.9428 4.9328 -0.0030 28 1 10.2659 3.9608 -0.3757 29 6 10.4888 5.1706 1.4063 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6768 1.9563 -0.8900 37 1 3.7284 3.2885 -0.8912 38 1 3.7291 3.2891 0.8887 39 1 5.8995 4.6148 -0.0027 40 1 8.0984 3.0835 0.8890 41 1 8.0989 3.0815 -0.8909 42 1 8.1232 5.0619 -2.1710 43 1 7.1281 6.2591 -1.2800 44 1 9.7721 6.3964 -3.4221 45 1 8.3990 7.5109 -3.2202 46 1 10.2310 8.6394 -4.8432 47 1 12.8438 12.0909 -6.1198 48 1 10.9488 5.6212 -1.7967 49 1 11.0509 6.7506 -0.4163 50 1 10.0894 4.4151 2.0830 51 1 11.5768 5.1053 1.3903 52 1 10.1893 6.1608 1.7497 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101793858.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:50 Heat of formation + Delta-G solvation = -148.179652 kcal Electronic energy + Delta-G solvation = -29304.037386 eV Core-core repulsion = 25109.223665 eV Total energy + Delta-G solvation = -4194.813722 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.14595 -40.58087 -39.57294 -38.67308 -36.22253 -35.80790 -34.57359 -34.28373 -33.69843 -31.56925 -29.73992 -28.82551 -27.08872 -26.71038 -26.09225 -24.25405 -22.51813 -22.12759 -21.68697 -21.30348 -20.81908 -20.05076 -18.23219 -17.94634 -17.69595 -17.50155 -17.05426 -16.80861 -16.42234 -16.32962 -16.19302 -15.65327 -15.35481 -15.19188 -15.11189 -14.72685 -14.67518 -14.42346 -14.29646 -14.11845 -13.76412 -13.67579 -13.45182 -13.05585 -13.02344 -12.99871 -12.87455 -12.81699 -12.44038 -12.41677 -12.23917 -11.98209 -11.83627 -11.77867 -11.75302 -11.64576 -11.54382 -11.48585 -10.85563 -10.66035 -10.40455 -10.23142 -10.11513 -9.29246 -8.40563 -6.01155 1.29835 1.35415 1.44091 1.58222 1.82506 1.98046 2.23133 2.65829 2.99390 3.14914 3.25644 3.55682 3.60140 3.79603 3.85953 4.04841 4.12907 4.14617 4.20119 4.27523 4.28327 4.33865 4.37000 4.42295 4.43370 4.46193 4.58805 4.60764 4.65011 4.66279 4.68155 4.79950 4.85748 4.89011 5.04329 5.12096 5.17357 5.19291 5.24144 5.25446 5.35834 5.38739 5.46174 5.53638 5.89930 5.96849 6.07005 6.11617 6.56305 6.61210 6.89945 7.23615 7.41431 7.99424 8.77237 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014707 B = 0.001770 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.389954 B =15814.265219 C =17317.846146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 C 0.056 3.944 4 O -0.403 6.403 5 C 0.044 3.956 6 C 0.509 3.491 7 O -0.578 6.578 8 N -0.712 5.712 9 C 0.140 3.860 10 C -0.084 4.084 11 H 0.100 0.900 12 C 0.039 3.961 13 N -0.515 5.515 14 C 0.045 3.955 15 C 0.451 3.549 16 O -0.606 6.606 17 N -0.594 5.594 18 C -0.327 4.327 19 H 0.054 0.946 20 C -0.015 4.015 21 N -0.936 5.936 22 Si 0.964 3.036 23 H -0.256 1.256 24 H -0.276 1.276 25 H -0.233 1.233 26 C 0.046 3.954 27 C -0.088 4.088 28 H 0.088 0.912 29 C -0.138 4.138 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.419 0.581 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.103 0.897 44 H 0.076 0.924 45 H 0.123 0.877 46 H 0.389 0.611 47 H 0.279 0.721 48 H 0.034 0.966 49 H 0.054 0.946 50 H 0.072 0.928 51 H 0.052 0.948 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.897 -21.840 8.116 34.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 C -0.020 4.020 4 O -0.322 6.322 5 C -0.035 4.035 6 C 0.296 3.704 7 O -0.457 6.457 8 N -0.366 5.366 9 C 0.016 3.984 10 C -0.103 4.103 11 H 0.118 0.882 12 C -0.088 4.088 13 N -0.239 5.239 14 C -0.086 4.086 15 C 0.239 3.761 16 O -0.490 6.490 17 N -0.236 5.236 18 C -0.456 4.456 19 H 0.072 0.928 20 C -0.213 4.213 21 N -0.576 5.576 22 Si 0.785 3.215 23 H -0.180 1.180 24 H -0.201 1.201 25 H -0.156 1.156 26 C -0.082 4.082 27 C -0.108 4.108 28 H 0.106 0.894 29 C -0.196 4.196 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.256 0.744 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.121 0.879 44 H 0.094 0.906 45 H 0.141 0.859 46 H 0.224 0.776 47 H 0.088 0.912 48 H 0.052 0.948 49 H 0.073 0.927 50 H 0.091 0.909 51 H 0.071 0.929 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -24.087 -21.881 9.013 33.767 hybrid contribution 0.501 0.347 -1.486 1.606 sum -23.586 -21.535 7.527 32.813 Atomic orbital electron populations 1.21671 0.93046 1.02805 1.02722 1.21486 0.96985 0.95444 1.02537 1.22811 0.78889 0.98527 1.01747 1.87964 1.21485 1.26994 1.95804 1.22354 0.89138 0.86619 1.05391 1.20866 0.90110 0.84008 0.75451 1.90722 1.75821 1.28676 1.50480 1.45759 1.06723 1.09196 1.74918 1.21246 0.79043 0.96016 1.02118 1.22275 0.94552 0.94639 0.98879 0.88160 1.23456 0.95494 0.92961 0.96886 1.64356 1.05250 1.35412 1.18873 1.22028 1.00039 0.95080 0.91460 1.20927 0.85286 0.86778 0.83107 1.90537 1.57053 1.67301 1.34082 1.42043 1.43155 1.30174 1.08278 1.18994 1.22865 1.08262 0.95523 0.92758 1.26091 0.96953 0.95900 1.02365 1.69803 1.35761 1.23265 1.28811 0.85372 0.78988 0.80413 0.76774 1.18011 1.20135 1.15631 1.22898 0.92783 0.94752 0.97768 1.21945 0.94568 0.97993 0.96264 0.89364 1.21792 1.00837 1.01860 0.95098 0.91788 0.91700 0.91738 0.92183 0.92120 0.91535 0.91612 0.87317 0.87298 0.74367 0.91452 0.92048 0.92501 0.87881 0.90626 0.85937 0.77596 0.91202 0.94766 0.92710 0.90859 0.92914 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 71.98 0.71 -0.25 16 2 C -0.13 -1.42 6.30 30.60 0.19 -1.22 16 3 C 0.06 0.60 5.94 71.98 0.43 1.02 16 4 O -0.40 -7.26 9.88 -129.94 -1.28 -8.55 16 5 C 0.04 0.49 6.42 71.24 0.46 0.95 16 6 C 0.51 9.12 7.91 87.66 0.69 9.81 16 7 O -0.58 -16.92 16.50 16.02 0.26 -16.65 16 8 N -0.71 -8.60 5.40 -463.06 -2.50 -11.10 16 9 C 0.14 2.10 4.99 86.38 0.43 2.53 16 10 C -0.08 -1.32 2.66 -9.59 -0.03 -1.34 16 11 H 0.10 1.50 7.87 -2.38 -0.02 1.48 16 12 C 0.04 0.68 5.66 86.65 0.49 1.17 16 13 N -0.51 -14.58 4.91 -887.59 -4.36 -18.94 16 14 C 0.05 1.37 5.27 85.56 0.45 1.82 16 15 C 0.45 20.34 7.61 87.66 0.67 21.01 16 16 O -0.61 -33.61 14.87 -3.06 -0.05 -33.65 16 17 N -0.59 -28.01 5.09 -306.99 -1.56 -29.57 16 18 C -0.33 -19.22 10.16 84.04 0.85 -18.37 16 19 H 0.05 3.81 7.39 -2.91 -0.02 3.79 16 20 C -0.01 -0.81 5.50 84.93 0.47 -0.35 16 21 N -0.94 -56.53 13.96 21.66 0.30 -56.23 16 22 Si 0.96 38.69 27.74 68.60 1.90 40.59 16 23 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 24 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 25 H -0.23 -7.87 6.52 99.48 0.65 -7.22 16 26 C 0.05 1.34 5.53 86.44 0.48 1.82 16 27 C -0.09 -1.77 3.17 -9.92 -0.03 -1.80 16 28 H 0.09 1.58 7.85 -2.39 -0.02 1.56 16 29 C -0.14 -2.69 8.89 71.98 0.64 -2.05 16 30 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.06 0.33 8.14 -2.39 -0.02 0.32 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.11 0.56 8.14 -2.39 -0.02 0.55 16 39 H 0.42 2.37 8.33 -92.71 -0.77 1.60 16 40 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 42 H 0.06 0.91 7.90 -2.39 -0.02 0.89 16 43 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.08 1.95 7.73 -2.39 -0.02 1.93 16 45 H 0.12 2.91 8.08 -2.38 -0.02 2.89 16 46 H 0.39 15.11 5.76 -92.71 -0.53 14.58 16 47 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 48 H 0.03 1.01 7.52 -2.38 -0.02 0.99 16 49 H 0.05 2.03 7.07 -2.38 -0.02 2.01 16 50 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 51 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 52 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -87.37 420.88 -0.83 -88.20 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: -0.46 Total: 31.15 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 6.91 Total: 14.75 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -8.12 Total: -115.85 kcal Atomic # 8 Polarization: -57.78 SS G_CDS: -1.06 Total: -58.85 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 1.90 Total: 40.59 kcal Total: -87.37 -0.83 -88.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101793858.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.979 kcal (2) G-P(sol) polarization free energy of solvation -87.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds