Wall clock time and date at job start Wed Apr 1 2020 01:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 H 1.08995 * 109.47147 * 329.99895 * 3 2 1 5 5 C 1.53003 * 109.47320 * 89.99490 * 3 2 1 6 6 C 1.53004 * 109.47093 * 209.99728 * 3 2 1 7 7 C 1.50697 * 109.47055 * 64.99703 * 6 3 2 8 8 O 1.21285 * 119.99796 * 0.02562 * 7 6 3 9 9 N 1.34771 * 119.99996 * 179.97438 * 7 6 3 10 10 C 1.46507 * 120.00103 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.46916 * 179.97438 * 10 9 7 12 12 H 1.09006 * 110.64716 * 56.70358 * 11 10 9 13 13 C 1.54937 * 110.72966 * 293.54568 * 11 10 9 14 14 N 1.48528 * 103.23204 * 204.22836 * 13 11 10 15 15 C 1.46898 * 111.00231 * 159.71924 * 14 13 11 16 16 C 1.50700 * 109.47193 * 170.00197 * 15 14 13 17 17 O 1.21289 * 119.99636 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99814 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99705 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99843 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99735 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99789 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 120.00069 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46949 * 90.00319 * 23 21 19 25 25 H 1.48503 * 109.47292 * 210.00213 * 23 21 19 26 26 H 1.48506 * 109.47395 * 330.00653 * 23 21 19 27 27 C 1.47905 * 105.81655 * 39.20714 * 14 13 11 28 28 C 1.53996 * 107.06082 * 334.67025 * 27 14 13 29 29 H 1.08998 * 110.31067 * 120.14022 * 28 27 14 30 30 C 1.52996 * 110.30865 * 242.30877 * 28 27 14 31 31 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 32 32 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 34 34 H 1.09001 * 109.46999 * 179.97438 * 5 3 2 35 35 H 1.08990 * 109.47164 * 300.00165 * 5 3 2 36 36 H 1.09004 * 109.46783 * 60.00316 * 5 3 2 37 37 H 1.09000 * 109.47059 * 184.99831 * 6 3 2 38 38 H 1.08998 * 109.46945 * 304.99957 * 6 3 2 39 39 H 0.97001 * 120.00290 * 0.02562 * 9 7 6 40 40 H 1.08996 * 109.46772 * 300.00281 * 10 9 7 41 41 H 1.09000 * 109.46534 * 60.00131 * 10 9 7 42 42 H 1.09001 * 110.66624 * 322.66621 * 13 11 10 43 43 H 1.09004 * 110.66416 * 85.79328 * 13 11 10 44 44 H 1.09008 * 109.47185 * 290.00513 * 15 14 13 45 45 H 1.09000 * 109.47123 * 49.99934 * 15 14 13 46 46 H 0.96994 * 119.99870 * 359.97438 * 18 16 15 47 47 H 0.96994 * 119.99729 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.91952 * 94.02139 * 27 14 13 49 49 H 1.08997 * 109.91729 * 215.31668 * 27 14 13 50 50 H 1.09002 * 109.47212 * 175.71483 * 30 28 27 51 51 H 1.09001 * 109.47572 * 295.71753 * 30 28 27 52 52 H 1.09001 * 109.47269 * 55.71635 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 2.2176 1.7715 1.4425 6 6 3.3590 1.2632 -0.7212 7 6 3.1417 0.9235 -2.1732 8 8 2.0187 0.7342 -2.5903 9 7 4.1953 0.8309 -3.0086 10 6 3.9841 0.5012 -4.4203 11 6 5.3327 0.4601 -5.1417 12 1 6.0042 -0.2514 -4.6610 13 6 5.9719 1.8706 -5.1901 14 7 6.8761 1.7939 -6.3659 15 6 7.2049 3.1356 -6.8656 16 6 8.3053 3.0343 -7.8904 17 8 8.7694 1.9509 -8.1766 18 7 8.7734 4.1476 -8.4887 19 6 9.7741 4.0553 -9.4213 20 1 10.1874 3.0906 -9.6762 21 6 10.2571 5.2031 -10.0378 22 7 11.2166 5.1147 -10.9314 23 14 9.5427 6.8716 -9.5963 24 1 10.3097 7.4552 -8.4666 25 1 9.6296 7.7742 -10.7724 26 1 8.1207 6.7118 -9.1990 27 6 6.1445 1.0127 -7.3868 28 6 5.1430 0.1150 -6.6367 29 1 4.1239 0.3405 -6.9507 30 6 5.4624 -1.3604 -6.8858 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 -0.8901 34 1 2.6613 2.7670 1.4424 35 1 1.2568 1.8015 1.9562 36 1 2.8829 1.0775 1.9564 37 1 3.8427 2.2369 -0.6443 38 1 3.9931 0.5051 -0.2616 39 1 5.0935 0.9826 -2.6751 40 1 3.5004 -0.4726 -4.4975 41 1 3.3497 1.2594 -4.8795 42 1 5.2085 2.6339 -5.3409 43 1 6.5395 2.0671 -4.2805 44 1 6.3211 3.5793 -7.3241 45 1 7.5368 3.7608 -6.0367 46 1 8.4019 5.0138 -8.2600 47 1 11.5536 5.9159 -11.3620 48 1 5.6100 1.6860 -8.0570 49 1 6.8426 0.3970 -7.9539 50 1 4.7947 -1.9824 -6.2897 51 1 5.3245 -1.5886 -7.9427 52 1 6.4956 -1.5613 -6.6026 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101802610.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:25:12 Heat of formation + Delta-G solvation = -118.850730 kcal Electronic energy + Delta-G solvation = -29867.929176 eV Core-core repulsion = 25674.387252 eV Total energy + Delta-G solvation = -4193.541924 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.29942 -39.49159 -38.25412 -37.84700 -35.11657 -33.97476 -33.33875 -33.05629 -31.63693 -30.51979 -28.64163 -27.67545 -26.84536 -26.00645 -24.84429 -23.20786 -22.02813 -20.97447 -20.80686 -19.91091 -19.26119 -18.23571 -17.42502 -17.21192 -16.58678 -15.97927 -15.86391 -15.51862 -15.40671 -15.09401 -14.94108 -14.75197 -14.25959 -13.90685 -13.76339 -13.72192 -13.45005 -13.26283 -13.01027 -12.98369 -12.89355 -12.45338 -12.39222 -12.33845 -12.28621 -12.13999 -11.78102 -11.75119 -11.50414 -11.29010 -11.11247 -11.06465 -10.87277 -10.72867 -10.61585 -10.58726 -10.05504 -9.97183 -9.88515 -9.55108 -9.30039 -8.61970 -8.17202 -8.05332 -6.30345 -3.81564 2.44084 2.89260 3.02025 3.06381 3.14627 3.45417 3.75326 3.92353 4.10519 4.32562 4.35893 4.45241 4.53083 4.60765 4.73573 4.89391 4.91345 5.01747 5.02269 5.11519 5.13201 5.16197 5.21001 5.22402 5.25185 5.26470 5.43990 5.45876 5.46601 5.51324 5.57565 5.59364 5.62670 5.71161 5.72655 5.77479 5.90903 5.95645 5.99878 6.08431 6.19685 6.26169 6.43607 6.89863 7.07701 7.10591 7.24184 7.59463 8.00164 8.15366 8.61556 8.96463 9.43581 9.85272 10.82929 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017620 B = 0.001888 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.722683 B =14826.768965 C =15960.942977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.378 6.378 3 C 0.100 3.900 4 H 0.068 0.932 5 C -0.176 4.176 6 C -0.142 4.142 7 C 0.515 3.485 8 O -0.535 6.535 9 N -0.731 5.731 10 C 0.131 3.869 11 C -0.100 4.100 12 H 0.093 0.907 13 C 0.037 3.963 14 N -0.490 5.490 15 C 0.034 3.966 16 C 0.454 3.546 17 O -0.557 6.557 18 N -0.594 5.594 19 C -0.303 4.303 20 H 0.119 0.881 21 C 0.041 3.959 22 N -0.882 5.882 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.047 3.953 28 C -0.094 4.094 29 H 0.075 0.925 30 C -0.141 4.141 31 H 0.035 0.965 32 H 0.081 0.919 33 H 0.046 0.954 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.402 0.598 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.050 0.950 45 H 0.089 0.911 46 H 0.369 0.631 47 H 0.273 0.727 48 H 0.040 0.960 49 H 0.096 0.904 50 H 0.052 0.948 51 H 0.057 0.943 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.727 -5.705 22.639 30.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.296 6.296 3 C 0.041 3.959 4 H 0.086 0.914 5 C -0.233 4.233 6 C -0.182 4.182 7 C 0.301 3.699 8 O -0.412 6.412 9 N -0.384 5.384 10 C 0.007 3.993 11 C -0.119 4.119 12 H 0.111 0.889 13 C -0.091 4.091 14 N -0.213 5.213 15 C -0.098 4.098 16 C 0.240 3.760 17 O -0.438 6.438 18 N -0.234 5.234 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.523 5.523 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.081 4.081 28 C -0.113 4.113 29 H 0.093 0.907 30 C -0.198 4.198 31 H 0.054 0.946 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.236 0.764 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.062 0.938 43 H 0.098 0.902 44 H 0.068 0.932 45 H 0.107 0.893 46 H 0.202 0.798 47 H 0.083 0.917 48 H 0.059 0.941 49 H 0.114 0.886 50 H 0.071 0.929 51 H 0.076 0.924 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.460 -6.888 22.088 30.233 hybrid contribution -0.877 2.321 0.106 2.484 sum -20.337 -4.567 22.194 30.447 Atomic orbital electron populations 1.22697 0.80981 1.02475 0.99720 1.87882 1.19833 1.26960 1.94955 1.21776 0.93529 0.85878 0.94671 0.91419 1.22308 1.02661 1.01721 0.96638 1.21865 0.99220 1.04568 0.92540 1.20538 0.84731 0.76662 0.87973 1.90697 1.23383 1.49175 1.77915 1.46045 1.09872 1.72470 1.09979 1.21379 0.96650 1.01229 0.80024 1.22411 0.95511 0.97874 0.96123 0.88888 1.23322 0.94639 0.95719 0.95409 1.64457 1.38664 1.13005 1.05215 1.22114 0.98048 0.91072 0.98598 1.19622 0.86298 0.85052 0.85078 1.90552 1.60853 1.27107 1.65325 1.42211 1.35539 1.06938 1.38671 1.19423 1.11283 0.97468 1.15032 0.86299 1.25028 0.96582 0.98073 0.96513 1.69620 1.26618 1.29667 1.26352 0.86678 0.79180 0.84479 0.79061 1.19630 1.20219 1.19605 1.22998 0.94935 0.96289 0.93882 1.21992 0.99348 0.96544 0.93461 0.90696 1.21822 1.02051 0.94312 1.01659 0.94643 0.90010 0.93570 0.91414 0.92160 0.91595 0.87575 0.87915 0.76419 0.91250 0.91551 0.93798 0.90188 0.93163 0.89306 0.79806 0.91658 0.94142 0.88610 0.92913 0.92387 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.82 101.05 1.09 1.39 16 2 O -0.38 -3.76 9.58 -49.64 -0.48 -4.24 16 3 C 0.10 0.76 2.27 -26.73 -0.06 0.70 16 4 H 0.07 0.56 7.60 -51.93 -0.39 0.17 16 5 C -0.18 -0.94 9.53 37.16 0.35 -0.58 16 6 C -0.14 -0.91 5.41 -27.88 -0.15 -1.06 16 7 C 0.51 4.94 7.71 -10.99 -0.08 4.85 16 8 O -0.54 -7.24 15.42 -8.86 -0.14 -7.38 16 9 N -0.73 -5.79 5.40 -60.29 -0.33 -6.12 16 10 C 0.13 1.19 4.99 -4.04 -0.02 1.17 16 11 C -0.10 -0.96 2.67 -88.76 -0.24 -1.19 16 12 H 0.09 0.89 7.87 -51.93 -0.41 0.48 16 13 C 0.04 0.41 5.66 -1.90 -0.01 0.39 16 14 N -0.49 -7.50 4.91 -231.89 -1.14 -8.63 16 15 C 0.03 0.55 5.27 -4.98 -0.03 0.53 16 16 C 0.45 10.26 7.61 -10.98 -0.08 10.18 16 17 O -0.56 -14.83 14.87 5.55 0.08 -14.75 16 18 N -0.59 -14.11 5.09 -10.96 -0.06 -14.17 16 19 C -0.30 -8.57 10.16 -14.93 -0.15 -8.72 16 20 H 0.12 3.84 7.39 -52.48 -0.39 3.46 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.78 13.96 55.50 0.77 -25.01 16 23 Si 0.88 19.34 27.74 -169.99 -4.71 14.63 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 27 C 0.05 0.69 5.53 -2.75 -0.02 0.68 16 28 C -0.09 -1.03 3.17 -89.26 -0.28 -1.31 16 29 H 0.07 0.76 7.85 -51.93 -0.41 0.35 16 30 C -0.14 -1.46 8.89 37.16 0.33 -1.13 16 31 H 0.03 0.22 7.87 -51.93 -0.41 -0.19 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.40 8.09 -51.93 -0.42 -0.02 16 34 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.06 0.31 7.87 -51.93 -0.41 -0.09 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.40 2.25 8.33 -40.82 -0.34 1.91 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 42 H 0.04 0.46 7.89 -51.93 -0.41 0.05 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.05 0.75 7.74 -51.92 -0.40 0.35 16 45 H 0.09 1.27 8.08 -51.93 -0.42 0.85 16 46 H 0.37 7.71 5.76 -40.82 -0.24 7.48 16 47 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 48 H 0.04 0.61 7.52 -51.93 -0.39 0.22 16 49 H 0.10 1.69 7.07 -51.93 -0.37 1.32 16 50 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 52 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 417.62 15.07 6.29 6.29 Total: -1.00 -35.54 417.62 -8.35 -43.90 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -9.22 Total: 8.55 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: 0.56 Total: 6.92 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.75 Total: -53.92 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.53 Total: -26.36 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.71 Total: 14.63 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -35.54 -8.35 -43.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101802610.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.952 kcal (2) G-P(sol) polarization free energy of solvation -35.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds