Wall clock time and date at job start Wed Apr 1 2020 01:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 H 1.08995 * 109.47147 * 329.99895 * 3 2 1 5 5 C 1.53003 * 109.47320 * 89.99490 * 3 2 1 6 6 C 1.53004 * 109.47093 * 209.99728 * 3 2 1 7 7 C 1.50697 * 109.47055 * 64.99703 * 6 3 2 8 8 O 1.21285 * 119.99796 * 0.02562 * 7 6 3 9 9 N 1.34771 * 119.99996 * 179.97438 * 7 6 3 10 10 C 1.46507 * 120.00103 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.46916 * 179.97438 * 10 9 7 12 12 H 1.09006 * 110.64716 * 56.70358 * 11 10 9 13 13 C 1.54937 * 110.72966 * 293.54568 * 11 10 9 14 14 N 1.48528 * 103.23204 * 204.22836 * 13 11 10 15 15 C 1.46898 * 111.00231 * 159.71924 * 14 13 11 16 16 C 1.50700 * 109.47193 * 170.00197 * 15 14 13 17 17 O 1.21289 * 119.99636 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99814 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99705 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99843 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99735 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99789 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 120.00069 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46949 * 90.00319 * 23 21 19 25 25 H 1.48503 * 109.47292 * 210.00213 * 23 21 19 26 26 H 1.48506 * 109.47395 * 330.00653 * 23 21 19 27 27 C 1.47905 * 105.81655 * 39.20714 * 14 13 11 28 28 C 1.53996 * 107.06082 * 334.67025 * 27 14 13 29 29 H 1.08998 * 110.31067 * 120.14022 * 28 27 14 30 30 C 1.52996 * 110.30865 * 242.30877 * 28 27 14 31 31 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 32 32 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 34 34 H 1.09001 * 109.46999 * 179.97438 * 5 3 2 35 35 H 1.08990 * 109.47164 * 300.00165 * 5 3 2 36 36 H 1.09004 * 109.46783 * 60.00316 * 5 3 2 37 37 H 1.09000 * 109.47059 * 184.99831 * 6 3 2 38 38 H 1.08998 * 109.46945 * 304.99957 * 6 3 2 39 39 H 0.97001 * 120.00290 * 0.02562 * 9 7 6 40 40 H 1.08996 * 109.46772 * 300.00281 * 10 9 7 41 41 H 1.09000 * 109.46534 * 60.00131 * 10 9 7 42 42 H 1.09001 * 110.66624 * 322.66621 * 13 11 10 43 43 H 1.09004 * 110.66416 * 85.79328 * 13 11 10 44 44 H 1.09008 * 109.47185 * 290.00513 * 15 14 13 45 45 H 1.09000 * 109.47123 * 49.99934 * 15 14 13 46 46 H 0.96994 * 119.99870 * 359.97438 * 18 16 15 47 47 H 0.96994 * 119.99729 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.91952 * 94.02139 * 27 14 13 49 49 H 1.08997 * 109.91729 * 215.31668 * 27 14 13 50 50 H 1.09002 * 109.47212 * 175.71483 * 30 28 27 51 51 H 1.09001 * 109.47572 * 295.71753 * 30 28 27 52 52 H 1.09001 * 109.47269 * 55.71635 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 2.2176 1.7715 1.4425 6 6 3.3590 1.2632 -0.7212 7 6 3.1417 0.9235 -2.1732 8 8 2.0187 0.7342 -2.5903 9 7 4.1953 0.8309 -3.0086 10 6 3.9841 0.5012 -4.4203 11 6 5.3327 0.4601 -5.1417 12 1 6.0042 -0.2514 -4.6610 13 6 5.9719 1.8706 -5.1901 14 7 6.8761 1.7939 -6.3659 15 6 7.2049 3.1356 -6.8656 16 6 8.3053 3.0343 -7.8904 17 8 8.7694 1.9509 -8.1766 18 7 8.7734 4.1476 -8.4887 19 6 9.7741 4.0553 -9.4213 20 1 10.1874 3.0906 -9.6762 21 6 10.2571 5.2031 -10.0378 22 7 11.2166 5.1147 -10.9314 23 14 9.5427 6.8716 -9.5963 24 1 10.3097 7.4552 -8.4666 25 1 9.6296 7.7742 -10.7724 26 1 8.1207 6.7118 -9.1990 27 6 6.1445 1.0127 -7.3868 28 6 5.1430 0.1150 -6.6367 29 1 4.1239 0.3405 -6.9507 30 6 5.4624 -1.3604 -6.8858 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 -0.8901 34 1 2.6613 2.7670 1.4424 35 1 1.2568 1.8015 1.9562 36 1 2.8829 1.0775 1.9564 37 1 3.8427 2.2369 -0.6443 38 1 3.9931 0.5051 -0.2616 39 1 5.0935 0.9826 -2.6751 40 1 3.5004 -0.4726 -4.4975 41 1 3.3497 1.2594 -4.8795 42 1 5.2085 2.6339 -5.3409 43 1 6.5395 2.0671 -4.2805 44 1 6.3211 3.5793 -7.3241 45 1 7.5368 3.7608 -6.0367 46 1 8.4019 5.0138 -8.2600 47 1 11.5536 5.9159 -11.3620 48 1 5.6100 1.6860 -8.0570 49 1 6.8426 0.3970 -7.9539 50 1 4.7947 -1.9824 -6.2897 51 1 5.3245 -1.5886 -7.9427 52 1 6.4956 -1.5613 -6.6026 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101802610.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:25:12 Heat of formation + Delta-G solvation = -147.184685 kcal Electronic energy + Delta-G solvation = -29869.157828 eV Core-core repulsion = 25674.387252 eV Total energy + Delta-G solvation = -4194.770576 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.13550 -40.59680 -39.59188 -38.73856 -36.18353 -35.76098 -34.29901 -33.76876 -33.67068 -31.34774 -29.54945 -28.69579 -27.47611 -26.98668 -26.41599 -24.38416 -22.70685 -21.86138 -21.58086 -21.26862 -20.74591 -20.03665 -18.12646 -17.79927 -17.69126 -17.38693 -16.81533 -16.72019 -16.34824 -16.20037 -15.90632 -15.66588 -15.46514 -15.27224 -14.96649 -14.68144 -14.53166 -14.46942 -14.12968 -13.83722 -13.75412 -13.67146 -13.48277 -13.38804 -13.01325 -12.92404 -12.90317 -12.74615 -12.43416 -12.41662 -12.30471 -12.21822 -11.98141 -11.76042 -11.64314 -11.63226 -11.54689 -11.48650 -10.80253 -10.49180 -10.40541 -10.23228 -10.01762 -9.29215 -8.40611 -6.01257 1.29732 1.35554 1.44184 1.75803 1.97900 2.23187 2.25393 2.65876 2.92357 3.14692 3.25469 3.56125 3.60903 3.81071 3.84574 3.92991 4.14752 4.20035 4.24375 4.30884 4.36750 4.39694 4.45081 4.46194 4.49323 4.60117 4.60681 4.63576 4.66846 4.68282 4.76639 4.81421 4.84903 4.88790 4.92445 5.04042 5.07645 5.13403 5.18849 5.25140 5.34297 5.42104 5.52166 5.53987 5.89978 5.96760 6.07059 6.33431 6.61092 6.63959 6.89795 7.35582 7.41263 7.99337 8.77191 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017620 B = 0.001888 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.722683 B =14826.768965 C =15960.942977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.403 6.403 3 C 0.092 3.908 4 H 0.055 0.945 5 C -0.169 4.169 6 C -0.137 4.137 7 C 0.509 3.491 8 O -0.581 6.581 9 N -0.720 5.720 10 C 0.141 3.859 11 C -0.085 4.085 12 H 0.096 0.904 13 C 0.041 3.959 14 N -0.515 5.515 15 C 0.046 3.954 16 C 0.451 3.549 17 O -0.606 6.606 18 N -0.594 5.594 19 C -0.327 4.327 20 H 0.054 0.946 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.965 3.035 24 H -0.256 1.256 25 H -0.276 1.276 26 H -0.233 1.233 27 C 0.046 3.954 28 C -0.088 4.088 29 H 0.088 0.912 30 C -0.138 4.138 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.032 0.968 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.138 0.862 38 H 0.117 0.883 39 H 0.416 0.584 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.102 0.898 44 H 0.076 0.924 45 H 0.123 0.877 46 H 0.389 0.611 47 H 0.279 0.721 48 H 0.035 0.965 49 H 0.054 0.946 50 H 0.071 0.929 51 H 0.052 0.948 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.637 -3.346 25.855 33.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.322 6.322 3 C 0.034 3.966 4 H 0.073 0.927 5 C -0.226 4.226 6 C -0.176 4.176 7 C 0.297 3.703 8 O -0.461 6.461 9 N -0.373 5.373 10 C 0.016 3.984 11 C -0.104 4.104 12 H 0.114 0.886 13 C -0.086 4.086 14 N -0.240 5.240 15 C -0.086 4.086 16 C 0.239 3.761 17 O -0.490 6.490 18 N -0.236 5.236 19 C -0.456 4.456 20 H 0.072 0.928 21 C -0.214 4.214 22 N -0.576 5.576 23 Si 0.785 3.215 24 H -0.180 1.180 25 H -0.201 1.201 26 H -0.156 1.156 27 C -0.082 4.082 28 C -0.107 4.107 29 H 0.106 0.894 30 C -0.196 4.196 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.050 0.950 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.156 0.844 38 H 0.135 0.865 39 H 0.252 0.748 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.120 0.880 44 H 0.094 0.906 45 H 0.141 0.859 46 H 0.224 0.776 47 H 0.088 0.912 48 H 0.053 0.947 49 H 0.073 0.927 50 H 0.090 0.910 51 H 0.072 0.928 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -21.363 -4.533 25.341 33.453 hybrid contribution -0.222 1.433 -0.940 1.728 sum -21.584 -3.101 24.401 32.725 Atomic orbital electron populations 1.22741 0.80465 1.02916 0.99844 1.87836 1.20627 1.28577 1.95155 1.21971 0.93777 0.84768 0.96108 0.92706 1.22256 1.02826 1.02650 0.94911 1.21946 0.98998 1.06691 0.89973 1.21133 0.84171 0.75722 0.89241 1.90685 1.25202 1.51290 1.78876 1.45947 1.10422 1.71636 1.09308 1.21175 0.95830 1.00692 0.80663 1.22269 0.95739 0.97419 0.94981 0.88565 1.23431 0.94489 0.96578 0.94113 1.64358 1.40675 1.12485 1.06435 1.22027 0.96251 0.92590 0.97705 1.20933 0.86498 0.83807 0.84877 1.90538 1.62579 1.29087 1.66790 1.42040 1.34964 1.08391 1.38236 1.18991 1.13539 0.95555 1.17534 0.92800 1.26112 0.96483 1.03279 0.95571 1.69808 1.28421 1.31607 1.27796 0.85360 0.80293 0.76698 0.79121 1.17988 1.20120 1.15603 1.22896 0.94681 0.96400 0.94211 1.21944 0.98750 0.95909 0.94126 0.89396 1.21789 1.01586 0.94433 1.01769 0.92942 0.89512 0.94965 0.89586 0.92325 0.91386 0.84381 0.86528 0.74756 0.92005 0.92165 0.92444 0.88026 0.90584 0.85928 0.77586 0.91201 0.94702 0.92745 0.90994 0.92848 0.93236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.82 113.37 1.23 1.79 16 2 O -0.40 -7.64 9.58 -135.20 -1.30 -8.93 16 3 C 0.09 1.23 2.27 30.60 0.07 1.30 16 4 H 0.05 0.85 7.60 -2.39 -0.02 0.84 16 5 C -0.17 -1.37 9.53 71.98 0.69 -0.68 16 6 C -0.14 -1.34 5.41 29.85 0.16 -1.18 16 7 C 0.51 8.64 7.71 87.66 0.68 9.32 16 8 O -0.58 -15.20 15.42 10.73 0.17 -15.03 16 9 N -0.72 -9.23 5.40 -463.06 -2.50 -11.74 16 10 C 0.14 2.21 4.99 86.38 0.43 2.64 16 11 C -0.08 -1.41 2.67 -9.59 -0.03 -1.44 16 12 H 0.10 1.59 7.87 -2.38 -0.02 1.57 16 13 C 0.04 0.74 5.66 86.65 0.49 1.23 16 14 N -0.52 -14.86 4.91 -887.56 -4.36 -19.22 16 15 C 0.05 1.39 5.27 85.56 0.45 1.84 16 16 C 0.45 20.45 7.61 87.66 0.67 21.11 16 17 O -0.61 -33.82 14.87 -3.06 -0.05 -33.87 16 18 N -0.59 -28.09 5.09 -306.98 -1.56 -29.65 16 19 C -0.33 -19.26 10.16 84.04 0.85 -18.40 16 20 H 0.05 3.79 7.39 -2.91 -0.02 3.77 16 21 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 22 N -0.94 -56.64 13.96 21.66 0.30 -56.33 16 23 Si 0.97 38.73 27.74 68.60 1.90 40.63 16 24 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 25 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 26 H -0.23 -7.85 6.52 99.48 0.65 -7.20 16 27 C 0.05 1.37 5.53 86.45 0.48 1.84 16 28 C -0.09 -1.82 3.17 -9.91 -0.03 -1.85 16 29 H 0.09 1.62 7.85 -2.39 -0.02 1.61 16 30 C -0.14 -2.80 8.89 71.98 0.64 -2.16 16 31 H 0.05 0.59 7.87 -2.39 -0.02 0.57 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.03 0.57 8.09 -2.38 -0.02 0.55 16 34 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.06 0.49 7.87 -2.39 -0.02 0.47 16 36 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 37 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.42 3.02 8.33 -92.71 -0.77 2.25 16 40 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 42 H 0.06 0.94 7.89 -2.39 -0.02 0.92 16 43 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 44 H 0.08 1.97 7.74 -2.38 -0.02 1.95 16 45 H 0.12 2.94 8.08 -2.39 -0.02 2.92 16 46 H 0.39 15.15 5.76 -92.71 -0.53 14.61 16 47 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 48 H 0.03 1.04 7.52 -2.39 -0.02 1.02 16 49 H 0.05 2.04 7.07 -2.39 -0.02 2.02 16 50 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 51 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 52 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -85.14 417.62 -0.60 -85.74 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: -0.45 Total: 33.46 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: 7.24 Total: 14.94 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -8.12 Total: -116.94 kcal Atomic # 8 Polarization: -56.66 SS G_CDS: -1.18 Total: -57.83 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 1.90 Total: 40.63 kcal Total: -85.14 -0.60 -85.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101802610.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.443 kcal (2) G-P(sol) polarization free energy of solvation -85.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds