Wall clock time and date at job start Wed Apr 1 2020 01:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00391 * 2 1 4 4 H 1.09007 * 109.47218 * 29.99433 * 3 2 1 5 5 C 1.53000 * 109.47086 * 269.99801 * 3 2 1 6 6 C 1.52999 * 109.47384 * 149.99433 * 3 2 1 7 7 C 1.50698 * 109.47004 * 294.99753 * 6 3 2 8 8 O 1.21283 * 120.00472 * 0.02562 * 7 6 3 9 9 N 1.34777 * 119.99538 * 179.97438 * 7 6 3 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 H 1.08999 * 110.64340 * 56.69895 * 11 10 9 13 13 C 1.54936 * 110.72284 * 293.54761 * 11 10 9 14 14 N 1.48529 * 103.22653 * 204.22597 * 13 11 10 15 15 C 1.46900 * 111.00040 * 159.72104 * 14 13 11 16 16 C 1.50706 * 109.47160 * 170.00313 * 15 14 13 17 17 O 1.21286 * 119.99809 * 359.97438 * 16 15 14 18 18 N 1.34779 * 119.99583 * 180.02562 * 16 15 14 19 19 C 1.37104 * 119.99246 * 179.97438 * 18 16 15 20 20 H 1.07992 * 120.00287 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99503 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99955 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99928 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47071 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46978 * 120.00284 * 23 21 19 26 26 H 1.48500 * 109.47239 * 239.99891 * 23 21 19 27 27 C 1.47906 * 105.82106 * 39.20831 * 14 13 11 28 28 C 1.53994 * 107.05434 * 334.66947 * 27 14 13 29 29 H 1.09000 * 110.31113 * 120.14769 * 28 27 14 30 30 C 1.53009 * 110.30616 * 242.30620 * 28 27 14 31 31 H 1.08998 * 109.47239 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47305 * 300.00810 * 1 2 3 33 33 H 1.09005 * 109.46694 * 60.00364 * 1 2 3 34 34 H 1.09001 * 109.47069 * 59.99416 * 5 3 2 35 35 H 1.08998 * 109.47393 * 179.97438 * 5 3 2 36 36 H 1.08999 * 109.46980 * 299.99598 * 5 3 2 37 37 H 1.09003 * 109.46690 * 175.00102 * 6 3 2 38 38 H 1.08993 * 109.46773 * 55.00439 * 6 3 2 39 39 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 40 40 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 41 41 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 42 42 H 1.08997 * 110.66514 * 322.66180 * 13 11 10 43 43 H 1.08994 * 110.66577 * 85.79216 * 13 11 10 44 44 H 1.09005 * 109.46732 * 289.99903 * 15 14 13 45 45 H 1.08995 * 109.47298 * 49.99999 * 15 14 13 46 46 H 0.96996 * 120.00210 * 359.97438 * 18 16 15 47 47 H 0.97003 * 119.99982 * 180.02562 * 22 21 19 48 48 H 1.08995 * 109.91927 * 94.02168 * 27 14 13 49 49 H 1.09003 * 109.91478 * 215.31821 * 27 14 13 50 50 H 1.09000 * 109.46687 * 175.71376 * 30 28 27 51 51 H 1.08999 * 109.47457 * 295.71965 * 30 28 27 52 52 H 1.09008 * 109.46885 * 55.72236 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2178 1.7712 -1.4425 6 6 3.3589 1.2632 0.7214 7 6 3.1415 0.9237 2.1734 8 8 2.0185 0.7336 2.5903 9 7 4.1951 0.8302 3.0086 10 6 3.9833 0.5060 4.4215 11 6 5.3315 0.4687 5.1440 12 1 5.8573 1.4162 5.0255 13 6 6.1978 -0.7074 4.6276 14 7 7.1186 -0.9748 5.7619 15 6 7.6841 -2.3277 5.6732 16 6 8.7886 -2.4780 6.6875 17 8 9.0767 -1.5493 7.4124 18 7 9.4569 -3.6441 6.7881 19 6 10.4621 -3.7806 7.7105 20 1 10.7180 -2.9540 8.3566 21 6 11.1507 -4.9829 7.8147 22 7 10.8389 -5.9890 7.0288 23 14 12.5198 -5.1692 9.0718 24 1 12.6733 -3.9006 9.8281 25 1 12.1821 -6.2678 10.0122 26 1 13.7918 -5.4877 8.3749 27 6 6.3047 -0.8198 6.9871 28 6 5.1414 0.1274 6.6397 29 1 4.1860 -0.3739 6.7950 30 6 5.2195 1.3981 7.4885 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.2570 1.8013 -1.9564 35 1 2.6608 2.7671 -1.4426 36 1 2.8831 1.0773 -1.9563 37 1 3.8427 2.2369 0.6444 38 1 3.9931 0.5051 0.2619 39 1 5.0933 0.9818 2.6752 40 1 3.3478 1.2655 4.8773 41 1 3.5007 -0.4679 4.5025 42 1 5.5781 -1.5800 4.4211 43 1 6.7568 -0.4125 3.7396 44 1 6.9036 -3.0616 5.8746 45 1 8.0852 -2.4891 4.6727 46 1 9.2267 -4.3867 6.2081 47 1 11.3194 -6.8285 7.1017 48 1 5.9144 -1.7886 7.2987 49 1 6.9108 -0.3872 7.7832 50 1 4.4365 2.0903 7.1792 51 1 5.0840 1.1420 8.5393 52 1 6.1940 1.8671 7.3516 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101802611.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:25:15 Heat of formation + Delta-G solvation = -126.012419 kcal Electronic energy + Delta-G solvation = -29839.950500 eV Core-core repulsion = 25646.098022 eV Total energy + Delta-G solvation = -4193.852478 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.24985 -39.40142 -38.17322 -37.69642 -35.05355 -33.91550 -33.28557 -32.98666 -31.17903 -30.46628 -28.56633 -27.52099 -26.80075 -25.94747 -24.85640 -23.27745 -21.99873 -20.92937 -20.74926 -19.88333 -19.01454 -17.84425 -17.36244 -17.20091 -16.49880 -15.93586 -15.85351 -15.48136 -15.26703 -15.08146 -14.83908 -14.51501 -14.10050 -13.94455 -13.81143 -13.70023 -13.42173 -13.22769 -13.06678 -13.01009 -12.82323 -12.39504 -12.32909 -12.18265 -12.12877 -11.74719 -11.72409 -11.57186 -11.37863 -11.17679 -11.07594 -10.96865 -10.82700 -10.66616 -10.53700 -10.33159 -10.20532 -10.01550 -9.84594 -9.48532 -9.25678 -8.48031 -7.96641 -7.90967 -6.39659 -3.80316 2.47934 2.93531 3.17435 3.27737 3.34983 3.49385 3.93262 4.00730 4.24921 4.36498 4.39722 4.52645 4.60375 4.70165 4.76569 4.94279 5.05208 5.05557 5.14106 5.15648 5.17562 5.22068 5.26085 5.26470 5.28566 5.32734 5.50258 5.50890 5.52335 5.55208 5.61853 5.71961 5.75235 5.75798 5.82478 5.87213 5.99080 6.04693 6.11529 6.23658 6.29890 6.31281 6.49542 6.94091 7.18109 7.23825 7.28583 7.57268 8.04168 8.08857 8.64569 9.20713 9.57348 10.09481 10.78321 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017991 B = 0.001820 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.923319 B =15381.173166 C =16332.293013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.100 3.900 4 H 0.067 0.933 5 C -0.176 4.176 6 C -0.142 4.142 7 C 0.515 3.485 8 O -0.536 6.536 9 N -0.731 5.731 10 C 0.131 3.869 11 C -0.100 4.100 12 H 0.092 0.908 13 C 0.037 3.963 14 N -0.490 5.490 15 C 0.036 3.964 16 C 0.446 3.554 17 O -0.576 6.576 18 N -0.567 5.567 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.048 3.952 28 C -0.094 4.094 29 H 0.074 0.926 30 C -0.140 4.140 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.035 0.965 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.402 0.598 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.044 0.956 43 H 0.079 0.921 44 H 0.049 0.951 45 H 0.088 0.912 46 H 0.391 0.609 47 H 0.270 0.730 48 H 0.040 0.960 49 H 0.094 0.906 50 H 0.051 0.949 51 H 0.056 0.944 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.203 14.616 -14.650 27.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.296 6.296 3 C 0.042 3.958 4 H 0.085 0.915 5 C -0.233 4.233 6 C -0.182 4.182 7 C 0.301 3.699 8 O -0.412 6.412 9 N -0.383 5.383 10 C 0.007 3.993 11 C -0.119 4.119 12 H 0.110 0.890 13 C -0.091 4.091 14 N -0.214 5.214 15 C -0.096 4.096 16 C 0.231 3.769 17 O -0.460 6.460 18 N -0.204 5.204 19 C -0.426 4.426 20 H 0.121 0.879 21 C -0.181 4.181 22 N -0.545 5.545 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.080 4.080 28 C -0.114 4.114 29 H 0.093 0.907 30 C -0.198 4.198 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.236 0.764 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.097 0.903 44 H 0.067 0.933 45 H 0.106 0.894 46 H 0.224 0.776 47 H 0.080 0.920 48 H 0.058 0.942 49 H 0.112 0.888 50 H 0.070 0.930 51 H 0.076 0.924 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.175 15.092 -13.840 27.380 hybrid contribution 0.233 -1.145 0.014 1.168 sum -17.942 13.947 -13.826 26.601 Atomic orbital electron populations 1.22695 0.80993 1.02511 0.99657 1.87893 1.19819 1.26907 1.94940 1.21772 0.93523 0.85905 0.94642 0.91463 1.22308 1.02663 1.01680 0.96674 1.21865 0.99233 1.04543 0.92569 1.20537 0.84729 0.76667 0.87970 1.90694 1.23404 1.49184 1.77916 1.46042 1.09845 1.72494 1.09952 1.21382 0.96689 1.01246 0.79975 1.22404 0.94461 0.99976 0.95044 0.89003 1.23316 0.93853 0.96619 0.95324 1.64464 1.29764 1.25744 1.01384 1.22083 0.97449 0.89572 1.00456 1.19723 0.85790 0.84128 0.87259 1.90507 1.69080 1.39807 1.46586 1.41874 1.31941 1.12075 1.34547 1.19741 1.10069 0.99227 1.13599 0.87897 1.25256 0.99237 0.95169 0.98397 1.69624 1.42275 1.03697 1.38858 0.85807 0.80185 0.78418 0.79973 1.19243 1.20820 1.20777 1.22972 0.92795 0.97899 0.94322 1.21998 0.98881 0.97072 0.93447 0.90718 1.21819 1.02032 0.96416 0.99497 0.89984 0.93596 0.94671 0.92181 0.91462 0.91556 0.87629 0.87858 0.76417 0.91369 0.91468 0.93747 0.90257 0.93254 0.89425 0.77554 0.91980 0.94193 0.88767 0.92992 0.92444 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.82 101.05 1.09 1.41 16 2 O -0.38 -3.95 9.58 -49.65 -0.48 -4.43 16 3 C 0.10 0.79 2.27 -26.73 -0.06 0.73 16 4 H 0.07 0.56 7.60 -51.93 -0.39 0.17 16 5 C -0.18 -0.98 9.53 37.16 0.35 -0.62 16 6 C -0.14 -0.96 5.41 -27.88 -0.15 -1.11 16 7 C 0.51 5.14 7.71 -10.99 -0.08 5.05 16 8 O -0.54 -7.44 15.42 -8.87 -0.14 -7.57 16 9 N -0.73 -6.12 5.40 -60.29 -0.33 -6.45 16 10 C 0.13 1.26 4.99 -4.04 -0.02 1.24 16 11 C -0.10 -1.01 2.67 -88.76 -0.24 -1.24 16 12 H 0.09 0.91 7.87 -51.93 -0.41 0.50 16 13 C 0.04 0.44 5.66 -1.90 -0.01 0.43 16 14 N -0.49 -7.96 4.91 -231.89 -1.14 -9.10 16 15 C 0.04 0.65 5.27 -4.97 -0.03 0.62 16 16 C 0.45 10.58 7.61 -10.98 -0.08 10.50 16 17 O -0.58 -15.60 14.87 5.55 0.08 -15.52 16 18 N -0.57 -14.48 5.29 -10.96 -0.06 -14.53 16 19 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 22 N -0.90 -24.73 13.05 55.50 0.72 -24.01 16 23 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 C 0.05 0.74 5.53 -2.75 -0.02 0.73 16 28 C -0.09 -1.08 3.17 -89.26 -0.28 -1.37 16 29 H 0.07 0.80 7.85 -51.93 -0.41 0.39 16 30 C -0.14 -1.47 8.89 37.16 0.33 -1.14 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.41 8.08 -51.93 -0.42 -0.01 16 33 H 0.03 0.23 7.87 -51.93 -0.41 -0.18 16 34 H 0.06 0.33 7.87 -51.93 -0.41 -0.08 16 35 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.40 2.44 8.33 -40.82 -0.34 2.10 16 40 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 41 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 42 H 0.04 0.53 7.89 -51.93 -0.41 0.12 16 43 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.05 0.82 7.73 -51.93 -0.40 0.42 16 45 H 0.09 1.42 8.08 -51.93 -0.42 1.00 16 46 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 47 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 48 H 0.04 0.64 7.52 -51.93 -0.39 0.25 16 49 H 0.09 1.71 7.07 -51.93 -0.37 1.35 16 50 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 52 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 LS Contribution 420.74 15.07 6.34 6.34 Total: -1.00 -34.49 420.74 -8.70 -43.19 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -9.26 Total: 8.73 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 0.57 Total: 7.21 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -0.80 Total: -54.09 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.53 Total: -27.52 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -34.49 -8.70 -43.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101802611.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.821 kcal (2) G-P(sol) polarization free energy of solvation -34.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds