Wall clock time and date at job start Wed Apr 1 2020 01:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00391 * 2 1 4 4 H 1.09007 * 109.47218 * 29.99433 * 3 2 1 5 5 C 1.53000 * 109.47086 * 269.99801 * 3 2 1 6 6 C 1.52999 * 109.47384 * 149.99433 * 3 2 1 7 7 C 1.50698 * 109.47004 * 294.99753 * 6 3 2 8 8 O 1.21283 * 120.00472 * 0.02562 * 7 6 3 9 9 N 1.34777 * 119.99538 * 179.97438 * 7 6 3 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 H 1.08999 * 110.64340 * 56.69895 * 11 10 9 13 13 C 1.54936 * 110.72284 * 293.54761 * 11 10 9 14 14 N 1.48529 * 103.22653 * 204.22597 * 13 11 10 15 15 C 1.46900 * 111.00040 * 159.72104 * 14 13 11 16 16 C 1.50706 * 109.47160 * 170.00313 * 15 14 13 17 17 O 1.21286 * 119.99809 * 359.97438 * 16 15 14 18 18 N 1.34779 * 119.99583 * 180.02562 * 16 15 14 19 19 C 1.37104 * 119.99246 * 179.97438 * 18 16 15 20 20 H 1.07992 * 120.00287 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99503 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99955 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99928 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47071 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46978 * 120.00284 * 23 21 19 26 26 H 1.48500 * 109.47239 * 239.99891 * 23 21 19 27 27 C 1.47906 * 105.82106 * 39.20831 * 14 13 11 28 28 C 1.53994 * 107.05434 * 334.66947 * 27 14 13 29 29 H 1.09000 * 110.31113 * 120.14769 * 28 27 14 30 30 C 1.53009 * 110.30616 * 242.30620 * 28 27 14 31 31 H 1.08998 * 109.47239 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47305 * 300.00810 * 1 2 3 33 33 H 1.09005 * 109.46694 * 60.00364 * 1 2 3 34 34 H 1.09001 * 109.47069 * 59.99416 * 5 3 2 35 35 H 1.08998 * 109.47393 * 179.97438 * 5 3 2 36 36 H 1.08999 * 109.46980 * 299.99598 * 5 3 2 37 37 H 1.09003 * 109.46690 * 175.00102 * 6 3 2 38 38 H 1.08993 * 109.46773 * 55.00439 * 6 3 2 39 39 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 40 40 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 41 41 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 42 42 H 1.08997 * 110.66514 * 322.66180 * 13 11 10 43 43 H 1.08994 * 110.66577 * 85.79216 * 13 11 10 44 44 H 1.09005 * 109.46732 * 289.99903 * 15 14 13 45 45 H 1.08995 * 109.47298 * 49.99999 * 15 14 13 46 46 H 0.96996 * 120.00210 * 359.97438 * 18 16 15 47 47 H 0.97003 * 119.99982 * 180.02562 * 22 21 19 48 48 H 1.08995 * 109.91927 * 94.02168 * 27 14 13 49 49 H 1.09003 * 109.91478 * 215.31821 * 27 14 13 50 50 H 1.09000 * 109.46687 * 175.71376 * 30 28 27 51 51 H 1.08999 * 109.47457 * 295.71965 * 30 28 27 52 52 H 1.09008 * 109.46885 * 55.72236 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2178 1.7712 -1.4425 6 6 3.3589 1.2632 0.7214 7 6 3.1415 0.9237 2.1734 8 8 2.0185 0.7336 2.5903 9 7 4.1951 0.8302 3.0086 10 6 3.9833 0.5060 4.4215 11 6 5.3315 0.4687 5.1440 12 1 5.8573 1.4162 5.0255 13 6 6.1978 -0.7074 4.6276 14 7 7.1186 -0.9748 5.7619 15 6 7.6841 -2.3277 5.6732 16 6 8.7886 -2.4780 6.6875 17 8 9.0767 -1.5493 7.4124 18 7 9.4569 -3.6441 6.7881 19 6 10.4621 -3.7806 7.7105 20 1 10.7180 -2.9540 8.3566 21 6 11.1507 -4.9829 7.8147 22 7 10.8389 -5.9890 7.0288 23 14 12.5198 -5.1692 9.0718 24 1 12.6733 -3.9006 9.8281 25 1 12.1821 -6.2678 10.0122 26 1 13.7918 -5.4877 8.3749 27 6 6.3047 -0.8198 6.9871 28 6 5.1414 0.1274 6.6397 29 1 4.1860 -0.3739 6.7950 30 6 5.2195 1.3981 7.4885 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.2570 1.8013 -1.9564 35 1 2.6608 2.7671 -1.4426 36 1 2.8831 1.0773 -1.9563 37 1 3.8427 2.2369 0.6444 38 1 3.9931 0.5051 0.2619 39 1 5.0933 0.9818 2.6752 40 1 3.3478 1.2655 4.8773 41 1 3.5007 -0.4679 4.5025 42 1 5.5781 -1.5800 4.4211 43 1 6.7568 -0.4125 3.7396 44 1 6.9036 -3.0616 5.8746 45 1 8.0852 -2.4891 4.6727 46 1 9.2267 -4.3867 6.2081 47 1 11.3194 -6.8285 7.1017 48 1 5.9144 -1.7886 7.2987 49 1 6.9108 -0.3872 7.7832 50 1 4.4365 2.0903 7.1792 51 1 5.0840 1.1420 8.5393 52 1 6.1940 1.8671 7.3516 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101802611.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:25:14 Heat of formation + Delta-G solvation = -152.070525 kcal Electronic energy + Delta-G solvation = -29841.080464 eV Core-core repulsion = 25646.098022 eV Total energy + Delta-G solvation = -4194.982442 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.12137 -40.55016 -39.50775 -38.73584 -36.16572 -35.73739 -34.27576 -33.74231 -33.22090 -31.34684 -29.46852 -28.65097 -27.47719 -26.98951 -26.51207 -24.46765 -22.71955 -21.88203 -21.58015 -21.13223 -20.52776 -19.82736 -18.11996 -17.82872 -17.69889 -17.34857 -16.76536 -16.62545 -16.36939 -16.14658 -15.93132 -15.73471 -15.56426 -15.33645 -14.95631 -14.66578 -14.54204 -14.38692 -13.82272 -13.73927 -13.66421 -13.52312 -13.45009 -13.38479 -12.98016 -12.94680 -12.87051 -12.74486 -12.45186 -12.38777 -12.31466 -12.22542 -12.10149 -11.76020 -11.64911 -11.62933 -11.55045 -11.48694 -10.80480 -10.49107 -10.32565 -10.02233 -10.00290 -9.30236 -8.46440 -5.95048 1.36313 1.41236 1.55581 1.75360 2.06365 2.25174 2.28504 2.80871 2.92679 3.19956 3.37392 3.55779 3.62908 3.81062 3.85335 3.93157 4.17442 4.24619 4.27101 4.31464 4.38760 4.40754 4.44770 4.48926 4.51927 4.59991 4.60887 4.62344 4.67397 4.68863 4.76399 4.80335 4.84732 4.88579 4.92410 5.03864 5.07345 5.13605 5.18722 5.25388 5.34467 5.41210 5.43064 5.52243 5.86844 5.99043 6.10507 6.34003 6.61277 6.63451 7.13642 7.35058 7.57184 8.13312 8.71329 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017991 B = 0.001820 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.923319 B =15381.173166 C =16332.293013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.404 6.404 3 C 0.092 3.908 4 H 0.056 0.944 5 C -0.169 4.169 6 C -0.137 4.137 7 C 0.509 3.491 8 O -0.581 6.581 9 N -0.721 5.721 10 C 0.141 3.859 11 C -0.083 4.083 12 H 0.101 0.899 13 C 0.039 3.961 14 N -0.511 5.511 15 C 0.049 3.951 16 C 0.442 3.558 17 O -0.615 6.615 18 N -0.577 5.577 19 C -0.331 4.331 20 H 0.078 0.922 21 C -0.015 4.015 22 N -0.922 5.922 23 Si 0.993 3.007 24 H -0.274 1.274 25 H -0.271 1.271 26 H -0.270 1.270 27 C 0.047 3.953 28 C -0.088 4.088 29 H 0.085 0.915 30 C -0.136 4.136 31 H 0.085 0.915 32 H 0.032 0.968 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.139 0.861 38 H 0.115 0.885 39 H 0.415 0.585 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.099 0.901 44 H 0.065 0.935 45 H 0.111 0.889 46 H 0.395 0.605 47 H 0.277 0.723 48 H 0.029 0.971 49 H 0.059 0.941 50 H 0.073 0.927 51 H 0.053 0.947 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.271 15.354 -16.339 28.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.323 6.323 3 C 0.034 3.966 4 H 0.074 0.926 5 C -0.226 4.226 6 C -0.176 4.176 7 C 0.297 3.703 8 O -0.460 6.460 9 N -0.373 5.373 10 C 0.016 3.984 11 C -0.102 4.102 12 H 0.119 0.881 13 C -0.089 4.089 14 N -0.235 5.235 15 C -0.083 4.083 16 C 0.230 3.770 17 O -0.500 6.500 18 N -0.215 5.215 19 C -0.460 4.460 20 H 0.096 0.904 21 C -0.214 4.214 22 N -0.563 5.563 23 Si 0.817 3.183 24 H -0.198 1.198 25 H -0.197 1.197 26 H -0.195 1.195 27 C -0.081 4.081 28 C -0.108 4.108 29 H 0.104 0.896 30 C -0.194 4.194 31 H 0.103 0.897 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.157 0.843 38 H 0.133 0.867 39 H 0.252 0.748 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.117 0.883 44 H 0.083 0.917 45 H 0.129 0.871 46 H 0.229 0.771 47 H 0.086 0.914 48 H 0.047 0.953 49 H 0.077 0.923 50 H 0.092 0.908 51 H 0.072 0.928 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.230 15.828 -15.564 28.725 hybrid contribution 0.233 -1.348 0.545 1.472 sum -17.997 14.480 -15.020 27.553 Atomic orbital electron populations 1.22737 0.80455 1.02873 0.99883 1.87845 1.20654 1.28652 1.95157 1.21979 0.93749 0.84761 0.96137 0.92566 1.22255 1.02832 1.02655 0.94875 1.21950 0.99048 1.06691 0.89940 1.21143 0.84160 0.75718 0.89257 1.90681 1.25196 1.51267 1.78881 1.45951 1.10413 1.71688 1.09289 1.21181 0.95905 1.00597 0.80706 1.22269 0.94490 0.99650 0.93785 0.88086 1.23430 0.93584 0.97449 0.94393 1.64388 1.31523 1.24529 1.03021 1.21933 0.95803 0.91253 0.99296 1.20780 0.86086 0.82827 0.87354 1.90479 1.70346 1.40918 1.48275 1.41949 1.32072 1.12906 1.34539 1.19687 1.12079 0.99345 1.14934 0.90374 1.26041 1.00990 0.94399 0.99979 1.69683 1.42998 1.04033 1.39585 0.84867 0.77556 0.78177 0.77707 1.19816 1.19677 1.19542 1.22894 0.93506 0.98136 0.93542 1.21954 0.97492 0.96665 0.94658 0.89626 1.21782 1.02111 0.96221 0.99269 0.89652 0.94895 0.92864 0.92294 0.89475 0.91497 0.84272 0.86666 0.74782 0.91373 0.92786 0.93222 0.88270 0.91743 0.87128 0.77113 0.91353 0.95271 0.92293 0.90791 0.92770 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.82 113.37 1.23 1.83 16 2 O -0.40 -8.19 9.58 -135.19 -1.30 -9.48 16 3 C 0.09 1.31 2.27 30.59 0.07 1.38 16 4 H 0.06 0.90 7.60 -2.38 -0.02 0.89 16 5 C -0.17 -1.49 9.53 71.98 0.69 -0.80 16 6 C -0.14 -1.49 5.41 29.85 0.16 -1.33 16 7 C 0.51 9.25 7.71 87.66 0.68 9.93 16 8 O -0.58 -15.82 15.42 10.75 0.17 -15.65 16 9 N -0.72 -10.24 5.40 -463.05 -2.50 -12.74 16 10 C 0.14 2.41 4.99 86.38 0.43 2.84 16 11 C -0.08 -1.49 2.67 -9.59 -0.03 -1.52 16 12 H 0.10 1.71 7.87 -2.39 -0.02 1.69 16 13 C 0.04 0.83 5.66 86.65 0.49 1.32 16 14 N -0.51 -16.18 4.91 -887.58 -4.36 -20.53 16 15 C 0.05 1.71 5.27 85.56 0.45 2.16 16 16 C 0.44 21.41 7.61 87.66 0.67 22.08 16 17 O -0.61 -34.45 14.87 -3.05 -0.05 -34.50 16 18 N -0.58 -30.08 5.29 -306.98 -1.62 -31.70 16 19 C -0.33 -19.03 9.68 84.04 0.81 -18.22 16 20 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 21 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 22 N -0.92 -50.25 13.05 21.66 0.28 -49.96 16 23 Si 0.99 43.38 29.55 68.60 2.03 45.40 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 C 0.05 1.49 5.53 86.45 0.48 1.96 16 28 C -0.09 -1.93 3.17 -9.91 -0.03 -1.96 16 29 H 0.09 1.72 7.85 -2.39 -0.02 1.70 16 30 C -0.14 -2.74 8.89 71.99 0.64 -2.10 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.03 0.61 8.08 -2.39 -0.02 0.59 16 33 H 0.05 0.65 7.87 -2.38 -0.02 0.63 16 34 H 0.06 0.53 7.87 -2.39 -0.02 0.51 16 35 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.14 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.42 3.63 8.33 -92.71 -0.77 2.86 16 40 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 42 H 0.05 1.05 7.89 -2.39 -0.02 1.03 16 43 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.06 2.08 7.73 -2.38 -0.02 2.06 16 45 H 0.11 3.38 8.08 -2.39 -0.02 3.36 16 46 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16 47 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 48 H 0.03 0.95 7.52 -2.39 -0.02 0.93 16 49 H 0.06 2.25 7.07 -2.39 -0.02 2.23 16 50 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 52 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -77.16 420.74 -0.74 -77.90 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: -0.59 Total: 34.03 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 7.20 Total: 17.24 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -8.20 Total: -114.94 kcal Atomic # 8 Polarization: -58.46 SS G_CDS: -1.17 Total: -59.63 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -77.16 -0.74 -77.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101802611.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.174 kcal (2) G-P(sol) polarization free energy of solvation -77.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds