Wall clock time and date at job start Wed Apr 1 2020 01:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 113.99807 * 2 1 4 4 C 1.53010 * 109.46903 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.46789 * 304.99648 * 4 3 2 6 6 C 1.52996 * 109.47112 * 64.99720 * 4 3 2 7 7 C 1.50704 * 109.46857 * 184.99623 * 4 3 2 8 8 O 1.21279 * 119.99947 * 0.02562 * 7 4 3 9 9 N 1.34773 * 119.99701 * 179.97438 * 7 4 3 10 10 C 1.46496 * 119.99927 * 180.02562 * 9 7 4 11 11 C 1.53003 * 109.47122 * 179.97438 * 10 9 7 12 12 H 1.09005 * 110.64370 * 51.85410 * 11 10 9 13 13 C 1.54930 * 110.88161 * 288.58886 * 11 10 9 14 14 N 1.48528 * 103.23053 * 204.15470 * 13 11 10 15 15 C 1.46904 * 110.99875 * 159.72096 * 14 13 11 16 16 C 1.50692 * 109.47274 * 59.24920 * 15 14 13 17 17 O 1.21296 * 119.99902 * 6.15604 * 16 15 14 18 18 N 1.34780 * 120.00093 * 186.15497 * 16 15 14 19 19 C 1.37102 * 119.99873 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99910 * 0.02562 * 19 18 16 21 21 C 1.38945 * 119.99846 * 180.02562 * 19 18 16 22 22 N 1.31416 * 120.00015 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00012 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47378 * 90.00127 * 23 21 19 25 25 H 1.48503 * 109.47472 * 210.00151 * 23 21 19 26 26 H 1.48504 * 109.47357 * 330.00120 * 23 21 19 27 27 C 1.47904 * 105.82021 * 39.21150 * 14 13 11 28 28 C 1.53995 * 107.05374 * 334.66454 * 27 14 13 29 29 H 1.09001 * 110.30781 * 120.14598 * 28 27 14 30 30 C 1.52995 * 110.31067 * 242.30919 * 28 27 14 31 31 H 1.09002 * 109.47256 * 60.00284 * 1 2 3 32 32 H 1.09003 * 109.47336 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47755 * 300.00071 * 1 2 3 34 34 H 1.08998 * 109.47659 * 59.99766 * 3 2 1 35 35 H 1.08999 * 109.47128 * 299.99234 * 3 2 1 36 36 H 1.08995 * 109.46953 * 299.99801 * 6 4 3 37 37 H 1.09002 * 109.47397 * 59.99879 * 6 4 3 38 38 H 1.09001 * 109.47245 * 179.97438 * 6 4 3 39 39 H 0.97002 * 120.00118 * 0.02562 * 9 7 4 40 40 H 1.08998 * 109.47598 * 60.00070 * 10 9 7 41 41 H 1.08995 * 109.47241 * 299.99866 * 10 9 7 42 42 H 1.09001 * 110.66420 * 322.59665 * 13 11 10 43 43 H 1.08999 * 110.66516 * 85.55342 * 13 11 10 44 44 H 1.09000 * 109.47283 * 179.25523 * 15 14 13 45 45 H 1.09002 * 109.47238 * 299.25081 * 15 14 13 46 46 H 0.96995 * 120.00110 * 0.02562 * 18 16 15 47 47 H 0.97000 * 119.99453 * 179.97438 * 22 21 19 48 48 H 1.08996 * 109.91656 * 215.31789 * 27 14 13 49 49 H 1.08996 * 109.92298 * 94.01865 * 27 14 13 50 50 H 1.09002 * 109.46987 * 58.55310 * 30 28 27 51 51 H 1.09001 * 109.47559 * 178.54392 * 30 28 27 52 52 H 1.09000 * 109.47511 * 298.55077 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8507 0.5685 0.8427 6 6 3.9962 0.5363 -1.3063 7 6 4.1479 2.5560 0.1244 8 8 3.4347 3.5336 0.2047 9 7 5.4882 2.6959 0.1469 10 6 6.0835 4.0290 0.2677 11 6 7.6088 3.9081 0.2695 12 1 7.9488 3.3215 -0.5840 13 6 8.1120 3.2872 1.5968 14 7 9.5091 3.7816 1.6953 15 6 9.9967 3.7096 3.0791 16 6 9.9385 2.2821 3.5586 17 8 9.6378 1.3952 2.7877 18 7 10.2205 1.9909 4.8440 19 6 10.1680 0.6921 5.2800 20 1 9.9011 -0.0976 4.5934 21 6 10.4583 0.3920 6.6052 22 7 10.4085 -0.8530 7.0231 23 14 10.9206 1.7579 7.7926 24 1 9.6937 2.2869 8.4406 25 1 11.8372 1.2221 8.8310 26 1 11.5987 2.8508 7.0502 27 6 9.4762 5.1809 1.2171 28 6 8.2684 5.3062 0.2700 29 1 7.5697 6.0541 0.6450 30 6 8.7351 5.6738 -1.1399 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3635 0.5138 0.8900 34 1 1.6885 1.8464 0.8899 35 1 1.6886 1.8463 -0.8900 36 1 3.5533 -0.4555 -1.3958 37 1 3.6809 1.1524 -2.1485 38 1 5.0829 0.4507 -1.3061 39 1 6.0586 1.9139 0.0830 40 1 5.7550 4.4907 1.1988 41 1 5.7686 4.6453 -0.5743 42 1 7.5174 3.6437 2.4380 43 1 8.0892 2.1987 1.5453 44 1 11.0263 4.0651 3.1206 45 1 9.3711 4.3331 3.7178 46 1 10.4606 2.7002 5.4605 47 1 10.6115 -1.0624 7.9482 48 1 10.3956 5.4109 0.6788 49 1 9.3577 5.8593 2.0618 50 1 9.4228 4.9112 -1.5054 51 1 7.8728 5.7336 -1.8041 52 1 9.2421 6.6384 -1.1150 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101812925.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:25:23 Heat of formation + Delta-G solvation = -146.783661 kcal Electronic energy + Delta-G solvation = -30373.620337 eV Core-core repulsion = 26178.867150 eV Total energy + Delta-G solvation = -4194.753187 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.31549 -40.74569 -39.54811 -38.78326 -36.25243 -35.88430 -34.83046 -34.06968 -33.71419 -31.19631 -29.32540 -28.30841 -27.12335 -26.71849 -26.56243 -24.76261 -23.55030 -21.97792 -21.49958 -21.25749 -20.47502 -20.19721 -18.48972 -17.90159 -17.44610 -17.08523 -16.94672 -16.78026 -16.49170 -16.27209 -16.14264 -15.96665 -15.60547 -15.18665 -14.94933 -14.76337 -14.65229 -14.41633 -14.30224 -14.15352 -13.94838 -13.62825 -13.50355 -13.34198 -13.20937 -13.01428 -12.77250 -12.49962 -12.44673 -12.37230 -12.33780 -12.20901 -11.99643 -11.90563 -11.76063 -11.64503 -11.57357 -11.42453 -10.87789 -10.69777 -10.33273 -10.23734 -10.14969 -9.30831 -8.41595 -6.01833 1.28945 1.33767 1.42751 1.51188 1.94661 1.97140 2.21846 2.67665 2.91666 3.14744 3.17677 3.55828 3.58613 3.70266 3.82199 3.83585 3.97928 4.15210 4.22767 4.27999 4.30471 4.32067 4.40483 4.43816 4.48093 4.51124 4.59491 4.61973 4.66022 4.66995 4.72763 4.74818 4.82993 4.85851 4.95432 4.98387 5.09525 5.12627 5.20781 5.25973 5.29419 5.38524 5.49874 5.52609 5.89064 5.95322 6.08195 6.12401 6.41656 6.59475 6.88300 7.09948 7.39522 7.95963 8.75908 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008269 B = 0.002786 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3385.203597 B =10046.815817 C =12702.859743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.407 6.407 3 C 0.085 3.915 4 C -0.111 4.111 5 H 0.109 0.891 6 C -0.134 4.134 7 C 0.523 3.477 8 O -0.581 6.581 9 N -0.718 5.718 10 C 0.136 3.864 11 C -0.088 4.088 12 H 0.094 0.906 13 C 0.045 3.955 14 N -0.514 5.514 15 C 0.044 3.956 16 C 0.451 3.549 17 O -0.602 6.602 18 N -0.593 5.593 19 C -0.324 4.324 20 H 0.058 0.942 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.961 3.039 24 H -0.259 1.259 25 H -0.275 1.275 26 H -0.232 1.232 27 C 0.037 3.963 28 C -0.088 4.088 29 H 0.090 0.910 30 C -0.136 4.136 31 H 0.051 0.949 32 H 0.101 0.899 33 H 0.044 0.956 34 H 0.046 0.954 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.412 0.588 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.030 0.970 43 H 0.068 0.932 44 H 0.119 0.881 45 H 0.074 0.926 46 H 0.388 0.612 47 H 0.279 0.721 48 H 0.092 0.908 49 H 0.058 0.942 50 H 0.053 0.947 51 H 0.062 0.938 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.967 14.595 -15.456 23.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C 0.008 3.992 4 C -0.132 4.132 5 H 0.127 0.873 6 C -0.192 4.192 7 C 0.311 3.689 8 O -0.461 6.461 9 N -0.369 5.369 10 C 0.012 3.988 11 C -0.107 4.107 12 H 0.112 0.888 13 C -0.083 4.083 14 N -0.238 5.238 15 C -0.087 4.087 16 C 0.238 3.762 17 O -0.485 6.485 18 N -0.235 5.235 19 C -0.454 4.454 20 H 0.076 0.924 21 C -0.213 4.213 22 N -0.575 5.575 23 Si 0.781 3.219 24 H -0.184 1.184 25 H -0.200 1.200 26 H -0.155 1.155 27 C -0.090 4.090 28 C -0.107 4.107 29 H 0.108 0.892 30 C -0.193 4.193 31 H 0.070 0.930 32 H 0.120 0.880 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.248 0.752 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.048 0.952 43 H 0.087 0.913 44 H 0.137 0.863 45 H 0.092 0.908 46 H 0.223 0.777 47 H 0.088 0.912 48 H 0.110 0.890 49 H 0.076 0.924 50 H 0.073 0.927 51 H 0.081 0.919 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.146 14.075 -16.068 24.094 hybrid contribution -0.153 0.211 1.817 1.836 sum -11.299 14.286 -14.251 23.127 Atomic orbital electron populations 1.22938 0.79292 1.04008 1.00784 1.87791 1.21545 1.27705 1.95594 1.22126 0.91715 0.84305 1.01046 1.21200 0.95216 0.93669 1.03161 0.87343 1.21698 1.02122 1.01556 0.93779 1.20643 0.82427 0.90993 0.74886 1.90671 1.61800 1.41945 1.51696 1.46009 1.06443 1.10762 1.73684 1.21357 0.91568 0.83937 1.01926 1.22349 0.92777 0.97834 0.97774 0.88812 1.23244 0.87890 1.00840 0.96315 1.64486 1.21435 1.19047 1.18825 1.22069 1.03851 0.92169 0.90653 1.20811 0.81562 0.91979 0.81817 1.90510 1.52408 1.50482 1.55128 1.42063 1.63737 1.07690 1.10025 1.18989 1.46185 0.84437 0.95740 0.92411 1.26072 0.96774 0.99743 0.98755 1.69801 1.49301 1.20233 1.18154 0.85414 0.79462 0.78567 0.78409 1.18386 1.20008 1.15492 1.23139 0.99777 0.87715 0.98404 1.21955 0.96099 0.95395 0.97255 0.89219 1.21791 1.01465 1.01927 0.94149 0.92998 0.88019 0.93693 0.93535 0.92413 0.90374 0.91932 0.90900 0.75211 0.92512 0.90243 0.95150 0.91314 0.86330 0.90774 0.77676 0.91195 0.88999 0.92403 0.92740 0.91883 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.41 -8.65 10.24 -148.98 -1.53 -10.17 16 3 C 0.09 1.83 4.67 71.99 0.34 2.17 16 4 C -0.11 -2.31 2.96 -11.54 -0.03 -2.34 16 5 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 6 C -0.13 -2.23 8.99 71.98 0.65 -1.58 16 7 C 0.52 12.77 7.15 87.66 0.63 13.39 16 8 O -0.58 -17.85 15.92 -3.03 -0.05 -17.89 16 9 N -0.72 -15.45 5.37 -463.07 -2.49 -17.94 16 10 C 0.14 2.79 5.00 86.38 0.43 3.23 16 11 C -0.09 -1.81 2.61 -9.59 -0.03 -1.83 16 12 H 0.09 1.93 7.86 -2.38 -0.02 1.91 16 13 C 0.04 1.31 4.95 86.65 0.43 1.74 16 14 N -0.51 -14.80 5.11 -887.60 -4.54 -19.34 16 15 C 0.04 1.35 5.30 85.55 0.45 1.80 16 16 C 0.45 20.01 7.41 87.65 0.65 20.66 16 17 O -0.60 -32.09 13.88 -3.08 -0.04 -32.13 16 18 N -0.59 -27.77 5.09 -306.98 -1.56 -29.34 16 19 C -0.32 -18.83 10.16 84.04 0.85 -17.97 16 20 H 0.06 3.98 7.39 -2.91 -0.02 3.96 16 21 C -0.01 -0.82 5.50 84.92 0.47 -0.35 16 22 N -0.93 -56.20 13.96 21.66 0.30 -55.90 16 23 Si 0.96 38.79 27.74 68.60 1.90 40.69 16 24 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 26 H -0.23 -7.87 6.52 99.48 0.65 -7.22 16 27 C 0.04 0.72 6.36 86.45 0.55 1.27 16 28 C -0.09 -1.45 3.16 -9.91 -0.03 -1.48 16 29 H 0.09 1.30 7.85 -2.39 -0.02 1.28 16 30 C -0.14 -1.80 8.89 71.98 0.64 -1.16 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.05 1.09 7.95 -2.39 -0.02 1.07 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.08 1.30 7.82 -2.39 -0.02 1.28 16 37 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.07 1.06 7.56 -2.39 -0.02 1.05 16 39 H 0.41 8.09 7.89 -92.71 -0.73 7.36 16 40 H 0.06 1.31 8.00 -2.39 -0.02 1.29 16 41 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.03 0.92 7.82 -2.39 -0.02 0.90 16 43 H 0.07 2.54 6.44 -2.39 -0.02 2.52 16 44 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 45 H 0.07 1.91 7.98 -2.39 -0.02 1.90 16 46 H 0.39 15.15 5.76 -92.71 -0.53 14.62 16 47 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 48 H 0.09 1.63 7.68 -2.39 -0.02 1.61 16 49 H 0.06 0.99 7.68 -2.39 -0.02 0.97 16 50 H 0.05 0.82 8.13 -2.39 -0.02 0.80 16 51 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 52 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -78.62 415.72 -1.16 -79.79 By element: Atomic # 1 Polarization: 43.47 SS G_CDS: -0.41 Total: 43.06 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: 7.24 Total: 19.17 kcal Atomic # 7 Polarization: -114.23 SS G_CDS: -8.28 Total: -122.51 kcal Atomic # 8 Polarization: -58.58 SS G_CDS: -1.62 Total: -60.19 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 1.90 Total: 40.69 kcal Total: -78.62 -1.16 -79.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101812925.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.998 kcal (2) G-P(sol) polarization free energy of solvation -78.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds