Wall clock time and date at job start Wed Apr 1 2020 01:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 110.34893 * 2 1 4 4 C 1.53999 * 110.31055 * 237.86078 * 2 1 3 5 5 N 1.47902 * 107.05549 * 242.30285 * 4 2 1 6 6 C 1.46894 * 110.99853 * 214.15421 * 5 4 2 7 7 C 1.50701 * 109.47205 * 287.39839 * 6 5 4 8 8 O 1.21289 * 120.00204 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99998 * 180.02562 * 7 6 5 10 10 C 1.37096 * 119.99907 * 180.02562 * 9 7 6 11 11 H 1.08000 * 120.00129 * 359.97438 * 10 9 7 12 12 C 1.38952 * 119.99948 * 180.02562 * 10 9 7 13 13 N 1.31407 * 119.99856 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00158 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47339 * 89.99348 * 14 12 10 16 16 H 1.48497 * 109.47099 * 210.00071 * 14 12 10 17 17 H 1.48508 * 109.46909 * 329.99593 * 14 12 10 18 18 C 1.48525 * 105.82190 * 334.67036 * 5 4 2 19 19 C 1.54588 * 110.31233 * 122.13861 * 2 1 3 20 20 H 1.09005 * 110.87712 * 22.45105 * 19 2 1 21 21 C 1.53002 * 110.72698 * 259.23406 * 19 2 1 22 22 N 1.46501 * 109.46953 * 180.02562 * 21 19 2 23 23 C 1.34774 * 119.99944 * 179.97438 * 22 21 19 24 24 O 1.21285 * 119.99608 * 0.02562 * 23 22 21 25 25 C 1.50697 * 120.00590 * 180.02562 * 23 22 21 26 26 C 1.52995 * 109.47537 * 185.85126 * 25 23 22 27 27 C 1.52993 * 109.47348 * 59.73963 * 26 25 23 28 28 C 1.53001 * 109.47206 * 179.74353 * 26 25 23 29 29 O 1.42904 * 109.46951 * 299.73939 * 26 25 23 30 30 H 1.08996 * 109.47440 * 297.85356 * 1 2 3 31 31 H 1.08995 * 109.47365 * 57.86047 * 1 2 3 32 32 H 1.09003 * 109.46879 * 177.85923 * 1 2 3 33 33 H 1.08999 * 109.91524 * 122.95090 * 4 2 1 34 34 H 1.09000 * 109.91710 * 1.65835 * 4 2 1 35 35 H 1.09003 * 109.47181 * 47.39986 * 6 5 4 36 36 H 1.09001 * 109.47089 * 167.39895 * 6 5 4 37 37 H 0.96998 * 120.00452 * 359.97438 * 9 7 6 38 38 H 0.97000 * 119.99816 * 180.02562 * 13 12 10 39 39 H 1.09004 * 110.66886 * 280.77011 * 18 5 4 40 40 H 1.08999 * 110.67109 * 157.64075 * 18 5 4 41 41 H 1.09000 * 109.46782 * 60.04732 * 21 19 2 42 42 H 1.08994 * 109.47122 * 300.04663 * 21 19 2 43 43 H 0.96999 * 120.00546 * 0.02562 * 22 21 19 44 44 H 1.09003 * 109.46765 * 65.84464 * 25 23 22 45 45 H 1.09008 * 109.46689 * 305.85230 * 25 23 22 46 46 H 1.09006 * 109.47211 * 179.97438 * 27 26 25 47 47 H 1.09000 * 109.47439 * 300.00064 * 27 26 25 48 48 H 1.09007 * 109.47215 * 59.99998 * 27 26 25 49 49 H 1.09008 * 109.46866 * 295.20517 * 28 26 25 50 50 H 1.09001 * 109.47500 * 55.19894 * 28 26 25 51 51 H 1.08998 * 109.47572 * 175.20444 * 28 26 25 52 52 H 0.96700 * 113.99617 * 60.00106 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9090 1.0220 0.0000 4 6 2.0645 -0.7683 -1.2229 5 7 2.8314 -1.9235 -0.7082 6 6 3.9752 -2.2260 -1.5789 7 6 3.4810 -2.8475 -2.8597 8 8 2.2928 -3.0209 -3.0307 9 7 4.3594 -3.2106 -3.8153 10 6 3.9097 -3.7755 -4.9808 11 1 2.8517 -3.9299 -5.1330 12 6 4.8153 -4.1504 -5.9657 13 7 6.1027 -3.9630 -5.7803 14 14 4.2026 -4.9195 -7.5540 15 1 3.9392 -3.8516 -8.5517 16 1 5.2328 -5.8486 -8.0836 17 1 2.9486 -5.6697 -7.2892 18 6 3.2856 -1.5347 0.6514 19 6 2.0666 -0.7712 1.2276 20 1 1.3187 -1.4682 1.6058 21 6 2.5053 0.1984 2.3269 22 7 3.0086 -0.5602 3.4747 23 6 3.4538 0.0891 4.5686 24 8 3.4372 1.3014 4.6029 25 6 3.9722 -0.6910 5.7492 26 6 4.2745 0.2687 6.9017 27 6 2.9961 1.0111 7.2959 28 6 4.7947 -0.5241 8.1024 29 8 5.2651 1.2122 6.4886 30 1 -0.3634 0.4801 0.9086 31 1 -0.3634 0.5467 -0.8701 32 1 -0.3633 -1.0270 -0.0384 33 1 2.7161 -0.1224 -1.8114 34 1 1.2327 -1.1176 -1.8346 35 1 4.5128 -1.3053 -1.8055 36 1 4.6438 -2.9217 -1.0718 37 1 5.3096 -3.0717 -3.6788 38 1 6.7348 -4.2244 -6.4680 39 1 4.1564 -0.8816 0.5940 40 1 3.5048 -2.4180 1.2511 41 1 1.6543 0.8046 2.6373 42 1 3.2938 0.8471 1.9457 43 1 3.0222 -1.5297 3.4471 44 1 4.8839 -1.2166 5.4652 45 1 3.2199 -1.4135 6.0658 46 1 3.2114 1.6945 8.1174 47 1 2.6255 1.5760 6.4405 48 1 2.2405 0.2914 7.6110 49 1 4.0086 -1.1835 8.4706 50 1 5.6558 -1.1196 7.7992 51 1 5.0902 0.1657 8.8929 52 1 5.0026 1.7511 5.7298 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101923942.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:25:06 Heat of formation + Delta-G solvation = -134.189762 kcal Electronic energy + Delta-G solvation = -30076.181667 eV Core-core repulsion = 25881.974593 eV Total energy + Delta-G solvation = -4194.207074 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.69046 -39.56027 -37.99584 -37.51904 -35.19124 -33.96036 -33.23459 -32.93056 -31.20548 -30.68587 -28.80808 -27.64783 -27.52880 -26.02550 -24.89160 -23.28306 -21.54081 -20.89307 -20.64259 -19.96215 -19.05236 -17.87553 -17.45488 -17.13874 -16.35038 -16.12457 -15.93692 -15.53443 -15.27986 -15.01227 -14.62550 -14.51294 -14.23132 -13.97352 -13.77557 -13.60430 -13.39519 -13.10460 -13.10035 -12.80610 -12.54298 -12.52178 -12.24656 -12.22403 -12.18256 -11.86233 -11.75964 -11.62673 -11.42713 -11.30771 -11.20896 -11.00034 -10.87578 -10.72856 -10.58910 -10.39704 -10.26692 -10.21932 -10.02556 -9.49731 -9.42873 -8.51732 -8.00037 -7.94186 -6.41719 -3.82457 2.20870 2.78105 3.17318 3.25904 3.31708 3.90108 3.94994 3.96894 4.19301 4.22122 4.34288 4.44911 4.53640 4.62261 4.63239 4.84042 4.98697 5.07382 5.10201 5.13817 5.14687 5.23306 5.25353 5.26646 5.43715 5.44866 5.45527 5.51242 5.59334 5.61638 5.65868 5.70062 5.77559 5.81459 5.82434 5.89359 5.95816 6.01679 6.06716 6.12703 6.24803 6.27673 6.44955 7.07401 7.13345 7.19262 7.49503 7.55007 7.86894 8.06250 8.62144 9.18402 9.54802 10.06873 10.76143 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020152 B = 0.001833 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.094007 B =15271.205454 C =16225.144284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 H 0.075 0.925 4 C 0.048 3.952 5 N -0.490 5.490 6 C 0.036 3.964 7 C 0.445 3.555 8 O -0.577 6.577 9 N -0.566 5.566 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.021 3.979 13 N -0.903 5.903 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.270 1.270 18 C 0.037 3.963 19 C -0.100 4.100 20 H 0.092 0.908 21 C 0.128 3.872 22 N -0.724 5.724 23 C 0.518 3.482 24 O -0.546 6.546 25 C -0.174 4.174 26 C 0.145 3.855 27 C -0.189 4.189 28 C -0.140 4.140 29 O -0.567 6.567 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.040 0.960 34 H 0.095 0.905 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.391 0.609 38 H 0.271 0.729 39 H 0.044 0.956 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.404 0.596 44 H 0.104 0.896 45 H 0.101 0.899 46 H 0.061 0.939 47 H 0.081 0.919 48 H 0.058 0.942 49 H 0.069 0.931 50 H 0.063 0.937 51 H 0.066 0.934 52 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.191 7.752 24.183 25.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.114 4.114 3 H 0.093 0.907 4 C -0.080 4.080 5 N -0.213 5.213 6 C -0.095 4.095 7 C 0.230 3.770 8 O -0.460 6.460 9 N -0.203 5.203 10 C -0.427 4.427 11 H 0.120 0.880 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.205 1.205 16 H -0.209 1.209 17 H -0.194 1.194 18 C -0.092 4.092 19 C -0.120 4.120 20 H 0.110 0.890 21 C 0.005 3.995 22 N -0.375 5.375 23 C 0.305 3.695 24 O -0.425 6.425 25 C -0.214 4.214 26 C 0.104 3.896 27 C -0.246 4.246 28 C -0.198 4.198 29 O -0.379 6.379 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.113 0.887 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.224 0.776 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.238 0.762 44 H 0.123 0.877 45 H 0.120 0.880 46 H 0.080 0.920 47 H 0.100 0.900 48 H 0.077 0.923 49 H 0.088 0.912 50 H 0.082 0.918 51 H 0.085 0.915 52 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -4.851 7.713 24.418 26.062 hybrid contribution 0.690 0.048 -1.417 1.577 sum -4.162 7.761 23.000 24.629 Atomic orbital electron populations 1.21818 0.94099 1.02520 1.01363 1.21996 0.96712 0.98832 0.93813 0.90688 1.22977 0.99118 0.90207 0.95698 1.64457 1.19957 1.36235 1.00682 1.22081 0.92669 1.00170 0.94623 1.19709 0.87177 0.84949 0.85146 1.90508 1.16116 1.59166 1.80229 1.41864 1.08690 1.54499 1.15287 1.19688 0.94842 1.35824 0.92392 0.87951 1.25256 0.94954 0.97987 0.99811 1.69610 1.01042 1.48201 1.35563 0.85862 0.78418 0.78848 0.81185 1.20454 1.20938 1.19430 1.23322 0.95711 0.98571 0.91549 1.22414 0.98171 0.97009 0.94368 0.88954 1.21450 0.99232 0.93992 0.84869 1.46074 1.64482 1.10794 1.16141 1.20677 0.76676 0.88342 0.83802 1.90539 1.56102 1.14310 1.81589 1.22535 1.03731 1.00390 0.94731 1.20813 0.88714 0.88114 0.91951 1.22675 0.97218 1.01312 1.03408 1.21781 1.01592 0.99725 0.96669 1.86418 1.43584 1.53143 1.54707 0.92985 0.92391 0.91828 0.94152 0.88725 0.93245 0.89436 0.77554 0.91907 0.93759 0.90281 0.91098 0.91219 0.76150 0.87749 0.88039 0.91998 0.90049 0.92343 0.91174 0.91840 0.91476 0.75942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.89 37.16 0.33 -1.08 16 2 C -0.09 -1.02 3.17 -89.27 -0.28 -1.30 16 3 H 0.07 0.75 7.85 -51.92 -0.41 0.34 16 4 C 0.05 0.72 5.53 -2.75 -0.02 0.70 16 5 N -0.49 -7.71 4.91 -231.89 -1.14 -8.85 16 6 C 0.04 0.64 5.27 -4.98 -0.03 0.61 16 7 C 0.45 10.42 7.61 -10.98 -0.08 10.33 16 8 O -0.58 -15.44 14.87 5.55 0.08 -15.35 16 9 N -0.57 -14.30 5.29 -10.96 -0.06 -14.35 16 10 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 11 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 12 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 13 N -0.90 -24.52 13.05 55.50 0.72 -23.80 16 14 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 15 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 C 0.04 0.41 5.66 -1.90 -0.01 0.40 16 19 C -0.10 -0.94 2.67 -88.76 -0.24 -1.17 16 20 H 0.09 0.85 7.87 -51.93 -0.41 0.45 16 21 C 0.13 1.08 4.99 -4.04 -0.02 1.06 16 22 N -0.72 -5.17 5.40 -60.30 -0.33 -5.50 16 23 C 0.52 4.34 7.30 -10.99 -0.08 4.26 16 24 O -0.55 -6.14 11.76 -13.83 -0.16 -6.30 16 25 C -0.17 -1.08 4.98 -27.89 -0.14 -1.21 16 26 C 0.15 1.14 1.11 -90.63 -0.10 1.04 16 27 C -0.19 -1.48 8.50 37.15 0.32 -1.16 16 28 C -0.14 -0.88 8.84 37.16 0.33 -0.55 16 29 O -0.57 -6.03 12.95 -54.61 -0.71 -6.73 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.04 0.62 7.52 -51.93 -0.39 0.23 16 34 H 0.09 1.68 7.07 -51.93 -0.37 1.31 16 35 H 0.05 0.80 7.73 -51.93 -0.40 0.40 16 36 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 37 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 38 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.04 0.49 7.90 -51.93 -0.41 0.08 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 43 H 0.40 2.09 8.33 -40.82 -0.34 1.75 16 44 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.10 0.40 8.14 -51.92 -0.42 -0.02 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.08 0.78 5.71 -51.93 -0.30 0.49 16 48 H 0.06 0.37 8.14 -51.92 -0.42 -0.06 16 49 H 0.07 0.31 8.14 -51.92 -0.42 -0.12 16 50 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 52 H 0.39 4.13 6.36 45.56 0.29 4.42 16 LS Contribution 412.37 15.07 6.21 6.21 Total: -1.00 -32.87 412.37 -9.13 -42.00 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -8.48 Total: 12.70 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -0.26 Total: 3.98 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: -0.80 Total: -52.50 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.79 Total: -28.39 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.87 -9.13 -42.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101923942.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.189 kcal (2) G-P(sol) polarization free energy of solvation -32.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds