Wall clock time and date at job start Wed Apr 1 2020 01:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 110.34893 * 2 1 4 4 C 1.53999 * 110.31055 * 237.86078 * 2 1 3 5 5 N 1.47902 * 107.05549 * 242.30285 * 4 2 1 6 6 C 1.46894 * 110.99853 * 214.15421 * 5 4 2 7 7 C 1.50701 * 109.47205 * 287.39839 * 6 5 4 8 8 O 1.21289 * 120.00204 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99998 * 180.02562 * 7 6 5 10 10 C 1.37096 * 119.99907 * 180.02562 * 9 7 6 11 11 H 1.08000 * 120.00129 * 359.97438 * 10 9 7 12 12 C 1.38952 * 119.99948 * 180.02562 * 10 9 7 13 13 N 1.31407 * 119.99856 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00158 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47339 * 89.99348 * 14 12 10 16 16 H 1.48497 * 109.47099 * 210.00071 * 14 12 10 17 17 H 1.48508 * 109.46909 * 329.99593 * 14 12 10 18 18 C 1.48525 * 105.82190 * 334.67036 * 5 4 2 19 19 C 1.54588 * 110.31233 * 122.13861 * 2 1 3 20 20 H 1.09005 * 110.87712 * 22.45105 * 19 2 1 21 21 C 1.53002 * 110.72698 * 259.23406 * 19 2 1 22 22 N 1.46501 * 109.46953 * 180.02562 * 21 19 2 23 23 C 1.34774 * 119.99944 * 179.97438 * 22 21 19 24 24 O 1.21285 * 119.99608 * 0.02562 * 23 22 21 25 25 C 1.50697 * 120.00590 * 180.02562 * 23 22 21 26 26 C 1.52995 * 109.47537 * 185.85126 * 25 23 22 27 27 C 1.52993 * 109.47348 * 59.73963 * 26 25 23 28 28 C 1.53001 * 109.47206 * 179.74353 * 26 25 23 29 29 O 1.42904 * 109.46951 * 299.73939 * 26 25 23 30 30 H 1.08996 * 109.47440 * 297.85356 * 1 2 3 31 31 H 1.08995 * 109.47365 * 57.86047 * 1 2 3 32 32 H 1.09003 * 109.46879 * 177.85923 * 1 2 3 33 33 H 1.08999 * 109.91524 * 122.95090 * 4 2 1 34 34 H 1.09000 * 109.91710 * 1.65835 * 4 2 1 35 35 H 1.09003 * 109.47181 * 47.39986 * 6 5 4 36 36 H 1.09001 * 109.47089 * 167.39895 * 6 5 4 37 37 H 0.96998 * 120.00452 * 359.97438 * 9 7 6 38 38 H 0.97000 * 119.99816 * 180.02562 * 13 12 10 39 39 H 1.09004 * 110.66886 * 280.77011 * 18 5 4 40 40 H 1.08999 * 110.67109 * 157.64075 * 18 5 4 41 41 H 1.09000 * 109.46782 * 60.04732 * 21 19 2 42 42 H 1.08994 * 109.47122 * 300.04663 * 21 19 2 43 43 H 0.96999 * 120.00546 * 0.02562 * 22 21 19 44 44 H 1.09003 * 109.46765 * 65.84464 * 25 23 22 45 45 H 1.09008 * 109.46689 * 305.85230 * 25 23 22 46 46 H 1.09006 * 109.47211 * 179.97438 * 27 26 25 47 47 H 1.09000 * 109.47439 * 300.00064 * 27 26 25 48 48 H 1.09007 * 109.47215 * 59.99998 * 27 26 25 49 49 H 1.09008 * 109.46866 * 295.20517 * 28 26 25 50 50 H 1.09001 * 109.47500 * 55.19894 * 28 26 25 51 51 H 1.08998 * 109.47572 * 175.20444 * 28 26 25 52 52 H 0.96700 * 113.99617 * 60.00106 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9090 1.0220 0.0000 4 6 2.0645 -0.7683 -1.2229 5 7 2.8314 -1.9235 -0.7082 6 6 3.9752 -2.2260 -1.5789 7 6 3.4810 -2.8475 -2.8597 8 8 2.2928 -3.0209 -3.0307 9 7 4.3594 -3.2106 -3.8153 10 6 3.9097 -3.7755 -4.9808 11 1 2.8517 -3.9299 -5.1330 12 6 4.8153 -4.1504 -5.9657 13 7 6.1027 -3.9630 -5.7803 14 14 4.2026 -4.9195 -7.5540 15 1 3.9392 -3.8516 -8.5517 16 1 5.2328 -5.8486 -8.0836 17 1 2.9486 -5.6697 -7.2892 18 6 3.2856 -1.5347 0.6514 19 6 2.0666 -0.7712 1.2276 20 1 1.3187 -1.4682 1.6058 21 6 2.5053 0.1984 2.3269 22 7 3.0086 -0.5602 3.4747 23 6 3.4538 0.0891 4.5686 24 8 3.4372 1.3014 4.6029 25 6 3.9722 -0.6910 5.7492 26 6 4.2745 0.2687 6.9017 27 6 2.9961 1.0111 7.2959 28 6 4.7947 -0.5241 8.1024 29 8 5.2651 1.2122 6.4886 30 1 -0.3634 0.4801 0.9086 31 1 -0.3634 0.5467 -0.8701 32 1 -0.3633 -1.0270 -0.0384 33 1 2.7161 -0.1224 -1.8114 34 1 1.2327 -1.1176 -1.8346 35 1 4.5128 -1.3053 -1.8055 36 1 4.6438 -2.9217 -1.0718 37 1 5.3096 -3.0717 -3.6788 38 1 6.7348 -4.2244 -6.4680 39 1 4.1564 -0.8816 0.5940 40 1 3.5048 -2.4180 1.2511 41 1 1.6543 0.8046 2.6373 42 1 3.2938 0.8471 1.9457 43 1 3.0222 -1.5297 3.4471 44 1 4.8839 -1.2166 5.4652 45 1 3.2199 -1.4135 6.0658 46 1 3.2114 1.6945 8.1174 47 1 2.6255 1.5760 6.4405 48 1 2.2405 0.2914 7.6110 49 1 4.0086 -1.1835 8.4706 50 1 5.6558 -1.1196 7.7992 51 1 5.0902 0.1657 8.8929 52 1 5.0026 1.7511 5.7298 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101923942.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:25:05 Heat of formation + Delta-G solvation = -159.855802 kcal Electronic energy + Delta-G solvation = -30077.294630 eV Core-core repulsion = 25881.974593 eV Total energy + Delta-G solvation = -4195.320037 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.37054 -40.71731 -39.54273 -38.31477 -36.16784 -35.76013 -34.29805 -33.63229 -33.22513 -31.48392 -29.64584 -28.73895 -28.17081 -27.01248 -26.53315 -24.44429 -22.36432 -21.70820 -21.39077 -21.10637 -20.53807 -19.83031 -18.13553 -17.80196 -17.70614 -17.18062 -16.78836 -16.55680 -16.38893 -16.33881 -15.77600 -15.60958 -15.46093 -15.15293 -15.02572 -14.65554 -14.51513 -14.10516 -13.84804 -13.70968 -13.53121 -13.46771 -13.35699 -13.09841 -13.01372 -12.96734 -12.81630 -12.74300 -12.46683 -12.42204 -12.39317 -12.25718 -12.11042 -11.88784 -11.74059 -11.64725 -11.55027 -11.48426 -10.90439 -10.69078 -10.32896 -10.06861 -10.00701 -9.30207 -8.46595 -5.95172 1.37418 1.40986 1.53753 1.60614 2.06248 2.18613 2.28224 2.80701 3.19820 3.36850 3.38494 3.55171 3.60200 3.69312 3.82532 3.89958 4.10063 4.16858 4.26199 4.30116 4.32406 4.39640 4.41959 4.51715 4.58184 4.59809 4.65343 4.67606 4.68125 4.78951 4.80035 4.87698 4.94391 5.02467 5.05348 5.07970 5.13281 5.18549 5.25277 5.30381 5.37954 5.40707 5.44469 5.51717 5.86488 5.99071 6.10411 6.53296 6.61092 6.80081 7.13383 7.27380 7.57006 8.13168 8.70888 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020152 B = 0.001833 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.094007 B =15271.205454 C =16225.144284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 H 0.087 0.913 4 C 0.047 3.953 5 N -0.512 5.512 6 C 0.049 3.951 7 C 0.442 3.558 8 O -0.615 6.615 9 N -0.577 5.577 10 C -0.332 4.332 11 H 0.078 0.922 12 C -0.014 4.014 13 N -0.921 5.921 14 Si 0.993 3.007 15 H -0.272 1.272 16 H -0.270 1.270 17 H -0.273 1.273 18 C 0.038 3.962 19 C -0.084 4.084 20 H 0.099 0.901 21 C 0.138 3.862 22 N -0.715 5.715 23 C 0.514 3.486 24 O -0.578 6.578 25 C -0.166 4.166 26 C 0.134 3.866 27 C -0.185 4.185 28 C -0.139 4.139 29 O -0.587 6.587 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.029 0.971 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.111 0.889 37 H 0.395 0.605 38 H 0.277 0.723 39 H 0.052 0.948 40 H 0.098 0.902 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.416 0.584 44 H 0.115 0.885 45 H 0.131 0.869 46 H 0.054 0.946 47 H 0.061 0.939 48 H 0.077 0.923 49 H 0.093 0.907 50 H 0.065 0.935 51 H 0.057 0.943 52 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.991 7.106 25.770 27.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.107 4.107 3 H 0.106 0.894 4 C -0.081 4.081 5 N -0.236 5.236 6 C -0.082 4.082 7 C 0.229 3.771 8 O -0.501 6.501 9 N -0.214 5.214 10 C -0.461 4.461 11 H 0.096 0.904 12 C -0.214 4.214 13 N -0.562 5.562 14 Si 0.816 3.184 15 H -0.197 1.197 16 H -0.195 1.195 17 H -0.198 1.198 18 C -0.089 4.089 19 C -0.103 4.103 20 H 0.118 0.882 21 C 0.014 3.986 22 N -0.366 5.366 23 C 0.302 3.698 24 O -0.460 6.460 25 C -0.206 4.206 26 C 0.093 3.907 27 C -0.242 4.242 28 C -0.196 4.196 29 O -0.398 6.398 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.129 0.871 37 H 0.229 0.771 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.116 0.884 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.253 0.747 44 H 0.134 0.866 45 H 0.149 0.851 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.096 0.904 49 H 0.112 0.888 50 H 0.084 0.916 51 H 0.076 0.924 52 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -4.633 7.051 26.028 27.361 hybrid contribution 0.599 0.267 -1.873 1.984 sum -4.035 7.318 24.155 25.560 Atomic orbital electron populations 1.21782 0.93452 1.01882 1.02327 1.21948 0.97200 0.98988 0.92557 0.89424 1.22896 0.97821 0.90246 0.97149 1.64374 1.19733 1.37153 1.02303 1.21927 0.93467 1.00808 0.92039 1.20797 0.86478 0.83461 0.86384 1.90480 1.17909 1.60354 1.81335 1.41943 1.09096 1.55064 1.15327 1.19643 0.94128 1.38019 0.94332 0.90395 1.26032 0.95062 0.97841 1.02430 1.69671 1.01697 1.48260 1.36605 0.84933 0.77942 0.78189 0.77305 1.19716 1.19509 1.19795 1.23442 0.96602 0.99810 0.89054 1.22276 0.97423 0.96777 0.93823 0.88233 1.21243 0.98959 0.93554 0.84820 1.45966 1.63891 1.11369 1.15415 1.21083 0.76216 0.88073 0.84394 1.90539 1.57376 1.15867 1.82172 1.22517 1.04980 1.00076 0.93023 1.21099 0.88210 0.88145 0.93221 1.22622 0.97797 1.01503 1.02286 1.21813 1.02495 0.99645 0.95674 1.86404 1.44915 1.53876 1.54649 0.90727 0.92824 0.93150 0.95231 0.92424 0.91673 0.87143 0.77107 0.91346 0.93009 0.88360 0.91058 0.92129 0.74717 0.86646 0.85113 0.92719 0.91990 0.90447 0.88814 0.91606 0.92433 0.76392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.89 71.98 0.64 -1.97 16 2 C -0.09 -1.79 3.17 -9.92 -0.03 -1.82 16 3 H 0.09 1.61 7.85 -2.38 -0.02 1.59 16 4 C 0.05 1.43 5.53 86.45 0.48 1.90 16 5 N -0.51 -15.66 4.91 -887.57 -4.36 -20.02 16 6 C 0.05 1.68 5.27 85.56 0.45 2.13 16 7 C 0.44 21.09 7.61 87.66 0.67 21.76 16 8 O -0.62 -34.14 14.87 -3.06 -0.05 -34.19 16 9 N -0.58 -29.75 5.29 -306.98 -1.62 -31.37 16 10 C -0.33 -18.93 9.68 84.04 0.81 -18.12 16 11 H 0.08 4.75 7.16 -2.91 -0.02 4.72 16 12 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 13 N -0.92 -49.86 13.05 21.66 0.28 -49.57 16 14 Si 0.99 43.08 29.55 68.60 2.03 45.11 16 15 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 16 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 18 C 0.04 0.76 5.66 86.65 0.49 1.25 16 19 C -0.08 -1.37 2.67 -9.59 -0.03 -1.39 16 20 H 0.10 1.55 7.87 -2.38 -0.02 1.53 16 21 C 0.14 1.99 4.99 86.38 0.43 2.42 16 22 N -0.71 -8.16 5.40 -463.06 -2.50 -10.66 16 23 C 0.51 7.50 7.30 87.66 0.64 8.14 16 24 O -0.58 -12.44 11.76 15.49 0.18 -12.26 16 25 C -0.17 -1.58 4.98 29.85 0.15 -1.43 16 26 C 0.13 1.88 1.11 -10.80 -0.01 1.87 16 27 C -0.18 -2.65 8.50 71.98 0.61 -2.04 16 28 C -0.14 -1.43 8.84 71.98 0.64 -0.79 16 29 O -0.59 -12.20 12.95 -130.45 -1.69 -13.89 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.03 0.93 7.52 -2.39 -0.02 0.91 16 34 H 0.06 2.16 7.07 -2.39 -0.02 2.14 16 35 H 0.07 2.04 7.73 -2.39 -0.02 2.02 16 36 H 0.11 3.27 8.08 -2.39 -0.02 3.25 16 37 H 0.40 19.37 7.90 -92.71 -0.73 18.64 16 38 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 39 H 0.05 0.99 7.90 -2.38 -0.02 0.97 16 40 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 43 H 0.42 2.78 8.33 -92.71 -0.77 2.01 16 44 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.13 0.48 8.14 -2.38 -0.02 0.46 16 46 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 47 H 0.06 1.16 5.71 -2.39 -0.01 1.14 16 48 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 49 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 50 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 51 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 52 H 0.38 8.27 6.36 -74.06 -0.47 7.80 16 Total: -1.00 -73.68 412.37 -2.36 -76.04 By element: Atomic # 1 Polarization: 40.25 SS G_CDS: -1.04 Total: 39.20 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 6.40 Total: 11.61 kcal Atomic # 7 Polarization: -103.42 SS G_CDS: -8.20 Total: -111.62 kcal Atomic # 8 Polarization: -58.79 SS G_CDS: -1.55 Total: -60.34 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -73.68 -2.36 -76.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101923942.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.811 kcal (2) G-P(sol) polarization free energy of solvation -73.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds