Wall clock time and date at job start Wed Apr 1 2020 01:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47350 * 2 1 4 4 C 1.53005 * 109.46661 * 119.99567 * 2 1 3 5 5 H 1.09009 * 109.46833 * 184.99955 * 4 2 1 6 6 O 1.42897 * 109.47204 * 304.99899 * 4 2 1 7 7 C 1.50696 * 109.47092 * 65.00044 * 4 2 1 8 8 O 1.21284 * 120.00109 * 244.99821 * 7 4 2 9 9 N 1.34777 * 120.00137 * 65.00036 * 7 4 2 10 10 C 1.46506 * 119.99873 * 180.02562 * 9 7 4 11 11 C 1.53002 * 109.47035 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.64305 * 54.29605 * 11 10 9 13 13 C 1.54939 * 110.72188 * 291.14655 * 11 10 9 14 14 N 1.48529 * 103.22540 * 204.22852 * 13 11 10 15 15 C 1.46900 * 111.00206 * 159.71957 * 14 13 11 16 16 C 1.50697 * 109.47409 * 169.99731 * 15 14 13 17 17 O 1.21293 * 120.00074 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00376 * 179.97438 * 16 15 14 19 19 C 1.37091 * 120.00298 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00103 * 359.97438 * 19 18 16 21 21 C 1.38952 * 119.99986 * 180.02562 * 19 18 16 22 22 N 1.31413 * 119.99959 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99948 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47087 * 59.99494 * 23 21 19 25 25 H 1.48502 * 109.46815 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47047 * 299.99371 * 23 21 19 27 27 C 1.47895 * 105.82324 * 39.20457 * 14 13 11 28 28 C 1.54299 * 107.08431 * 334.52532 * 27 14 13 29 29 H 1.09002 * 110.28566 * 120.27193 * 28 27 14 30 30 C 1.53001 * 110.47452 * 242.53024 * 28 27 14 31 31 H 1.09004 * 109.46891 * 300.00674 * 1 2 3 32 32 H 1.09001 * 109.46672 * 60.00427 * 1 2 3 33 33 H 1.08991 * 109.47341 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47187 * 239.98879 * 2 1 3 35 35 H 1.09001 * 109.47361 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.46884 * 299.99443 * 3 2 1 37 37 H 1.08990 * 109.47412 * 59.99337 * 3 2 1 38 38 H 0.96697 * 114.00200 * 60.00124 * 6 4 2 39 39 H 0.96999 * 120.00047 * 359.97438 * 9 7 4 40 40 H 1.09004 * 109.47073 * 299.99562 * 10 9 7 41 41 H 1.09000 * 109.47212 * 59.99645 * 10 9 7 42 42 H 1.09002 * 110.66716 * 322.66175 * 13 11 10 43 43 H 1.09002 * 110.66869 * 85.79085 * 13 11 10 44 44 H 1.09001 * 109.47059 * 290.00361 * 15 14 13 45 45 H 1.09001 * 109.46964 * 50.00067 * 15 14 13 46 46 H 0.97001 * 119.99462 * 0.02562 * 18 16 15 47 47 H 0.97002 * 120.00116 * 180.02562 * 22 21 19 48 48 H 1.09004 * 109.92017 * 94.02372 * 27 14 13 49 49 H 1.08999 * 109.92352 * 215.11729 * 27 14 13 50 50 H 1.09000 * 109.47455 * 175.63216 * 30 28 27 51 51 H 1.08998 * 109.47510 * 295.63442 * 30 28 27 52 52 H 1.08999 * 109.47386 * 55.63669 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 3.1263 -0.6443 1.2953 6 8 1.4701 -0.1187 2.4131 7 6 1.6412 -2.1732 1.1891 8 8 0.8658 -2.6236 2.0057 9 7 2.1464 -2.9714 0.2277 10 6 1.7583 -4.3829 0.1688 11 6 2.4675 -5.0582 -1.0067 12 1 3.5452 -4.9076 -0.9431 13 6 1.9186 -4.5291 -2.3555 14 7 2.2182 -5.6343 -3.3014 15 6 1.3727 -5.5457 -4.4994 16 6 1.8656 -6.5227 -5.5355 17 8 2.8264 -7.2242 -5.2991 18 7 1.2382 -6.6178 -6.7246 19 6 1.6863 -7.5069 -7.6669 20 1 2.5423 -8.1309 -7.4567 21 6 1.0397 -7.6045 -8.8930 22 7 -0.0016 -6.8449 -9.1490 23 14 1.6507 -8.8156 -10.1773 24 1 1.5879 -10.1936 -9.6277 25 1 0.7956 -8.7264 -11.3881 26 1 3.0542 -8.4896 -10.5369 27 6 1.9537 -6.8848 -2.5573 28 6 2.1278 -6.5654 -1.0578 29 1 1.2010 -6.7629 -0.5192 30 6 3.2733 -7.3884 -0.4649 31 1 -0.3633 0.5140 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5140 -0.8898 35 1 3.1301 1.4425 -0.0005 36 1 1.6768 1.9562 -0.8901 37 1 1.6767 1.9563 0.8898 38 1 0.5041 -0.1506 2.4396 39 1 2.7663 -2.6112 -0.4256 40 1 2.0429 -4.8771 1.0978 41 1 0.6793 -4.4577 0.0333 42 1 0.8440 -4.3572 -2.2926 43 1 2.4383 -3.6178 -2.6514 44 1 0.3425 -5.7848 -4.2355 45 1 1.4190 -4.5342 -4.9028 46 1 0.4695 -6.0571 -6.9135 47 1 -0.4532 -6.9133 -10.0047 48 1 0.9360 -7.2240 -2.7509 49 1 2.6648 -7.6539 -2.8587 50 1 3.4328 -7.0946 0.5726 51 1 3.0199 -8.4476 -0.5076 52 1 4.1836 -7.2092 -1.0371 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101935987.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:25:17 Heat of formation + Delta-G solvation = -163.063519 kcal Electronic energy + Delta-G solvation = -30407.873625 eV Core-core repulsion = 26212.414491 eV Total energy + Delta-G solvation = -4195.459134 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.40439 -40.69965 -39.51551 -38.19250 -36.25818 -35.83399 -34.80180 -34.17052 -33.22109 -31.43016 -29.39991 -28.31940 -28.10127 -26.97052 -26.42667 -24.39138 -22.46333 -21.85928 -21.41347 -21.03066 -20.57113 -19.84515 -18.88589 -17.70117 -17.54647 -17.39813 -17.02345 -16.61163 -16.40664 -16.19088 -15.81745 -15.59676 -15.51824 -15.06082 -14.94848 -14.66654 -14.56675 -14.17996 -13.92763 -13.71874 -13.61501 -13.50317 -13.42418 -13.27334 -12.97186 -12.96248 -12.82823 -12.67515 -12.46697 -12.41383 -12.27774 -12.13451 -12.10058 -11.84258 -11.76454 -11.65908 -11.55747 -11.47610 -11.44676 -10.49412 -10.32198 -10.12509 -10.00366 -9.29402 -8.46112 -5.94635 1.39476 1.41091 1.51945 1.53045 2.06928 2.10744 2.28519 2.81041 3.20339 3.29700 3.37432 3.54338 3.59150 3.71650 3.76929 3.85009 3.91779 4.15831 4.18589 4.27393 4.30497 4.40099 4.41290 4.52334 4.55582 4.58961 4.60116 4.64468 4.68278 4.77874 4.80561 4.87868 4.92391 5.01607 5.03599 5.10457 5.17870 5.18443 5.24728 5.32116 5.37984 5.40859 5.45187 5.46000 5.86974 5.99324 6.10922 6.38926 6.61601 6.61904 7.13802 7.17613 7.57559 8.13830 8.71175 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015461 B = 0.002101 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.587970 B =13324.254678 C =14660.442649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.117 4.117 3 C -0.142 4.142 4 C 0.099 3.901 5 H 0.142 0.858 6 O -0.551 6.551 7 C 0.485 3.515 8 O -0.580 6.580 9 N -0.711 5.711 10 C 0.138 3.862 11 C -0.084 4.084 12 H 0.100 0.900 13 C 0.039 3.961 14 N -0.511 5.511 15 C 0.049 3.951 16 C 0.442 3.558 17 O -0.615 6.615 18 N -0.577 5.577 19 C -0.331 4.331 20 H 0.078 0.922 21 C -0.014 4.014 22 N -0.922 5.922 23 Si 0.992 3.008 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.271 1.271 27 C 0.048 3.952 28 C -0.087 4.087 29 H 0.087 0.913 30 C -0.137 4.137 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.041 0.959 34 H 0.099 0.901 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.385 0.615 39 H 0.416 0.584 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.100 0.900 44 H 0.066 0.934 45 H 0.111 0.889 46 H 0.395 0.605 47 H 0.277 0.723 48 H 0.029 0.971 49 H 0.057 0.943 50 H 0.073 0.927 51 H 0.053 0.947 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.566 15.210 19.442 24.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.136 4.136 3 C -0.199 4.199 4 C 0.037 3.963 5 H 0.159 0.841 6 O -0.357 6.357 7 C 0.272 3.728 8 O -0.460 6.460 9 N -0.365 5.365 10 C 0.014 3.986 11 C -0.103 4.103 12 H 0.118 0.882 13 C -0.088 4.088 14 N -0.235 5.235 15 C -0.082 4.082 16 C 0.229 3.771 17 O -0.501 6.501 18 N -0.214 5.214 19 C -0.461 4.461 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.563 5.563 23 Si 0.815 3.185 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.081 4.081 28 C -0.107 4.107 29 H 0.105 0.895 30 C -0.195 4.195 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.117 0.883 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.236 0.764 39 H 0.253 0.747 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.118 0.882 44 H 0.083 0.917 45 H 0.129 0.871 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.048 0.952 49 H 0.076 0.924 50 H 0.092 0.908 51 H 0.072 0.928 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.679 14.571 19.959 24.857 hybrid contribution -1.525 -0.726 -1.297 2.130 sum 1.154 13.845 18.662 23.266 Atomic orbital electron populations 1.21892 0.94962 1.01457 1.03166 1.21759 0.96635 0.98284 0.96912 1.21757 1.01661 0.94101 1.02372 1.22106 1.00823 0.86152 0.87260 0.84065 1.86547 1.27090 1.79488 1.42622 1.22056 0.80218 0.90335 0.80200 1.90710 1.36941 1.76975 1.41351 1.45957 1.48255 1.10251 1.32016 1.21255 0.98901 0.80624 0.97849 1.22275 1.01465 0.93950 0.92635 0.88161 1.23442 0.99672 0.94880 0.90808 1.64373 1.51582 1.03106 1.04417 1.21930 0.95326 0.99679 0.91310 1.20801 0.85371 0.87018 0.83918 1.90483 1.30686 1.48708 1.80213 1.41939 1.29650 1.36650 1.13210 1.19598 1.14004 1.17435 0.95056 0.90415 1.26024 0.95961 0.99689 0.99673 1.69665 1.20797 1.40281 1.25521 0.85008 0.78245 0.78082 0.77128 1.19802 1.19501 1.19667 1.22934 0.98847 0.93091 0.93185 1.21992 1.00246 0.94636 0.93815 0.89497 1.21779 0.97265 0.99463 1.00952 0.91916 0.90921 0.93951 0.88326 0.91511 0.91678 0.92551 0.76419 0.74674 0.91383 0.92111 0.92926 0.88213 0.91654 0.87054 0.77098 0.91339 0.95212 0.92443 0.90849 0.92786 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 8.58 71.98 0.62 -1.06 16 2 C -0.12 -1.01 2.73 -10.79 -0.03 -1.04 16 3 C -0.14 -1.11 9.09 71.98 0.65 -0.46 16 4 C 0.10 1.19 3.13 29.85 0.09 1.28 16 5 H 0.14 1.18 8.14 -2.38 -0.02 1.16 16 6 O -0.55 -8.93 12.43 -129.99 -1.62 -10.54 16 7 C 0.48 8.23 6.15 87.66 0.54 8.77 16 8 O -0.58 -15.09 16.32 15.95 0.26 -14.83 16 9 N -0.71 -9.00 5.33 -463.04 -2.47 -11.47 16 10 C 0.14 2.14 4.99 86.38 0.43 2.57 16 11 C -0.08 -1.40 2.63 -9.59 -0.03 -1.43 16 12 H 0.10 1.59 7.86 -2.39 -0.02 1.57 16 13 C 0.04 0.77 5.77 86.65 0.50 1.27 16 14 N -0.51 -15.50 4.91 -886.96 -4.35 -19.85 16 15 C 0.05 1.66 5.27 85.56 0.45 2.11 16 16 C 0.44 20.96 7.61 87.66 0.67 21.63 16 17 O -0.62 -34.01 14.86 -3.07 -0.05 -34.05 16 18 N -0.58 -29.60 5.29 -306.99 -1.62 -31.22 16 19 C -0.33 -18.83 9.68 84.04 0.81 -18.02 16 20 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 21 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 22 N -0.92 -49.71 13.05 21.66 0.28 -49.43 16 23 Si 0.99 42.94 29.55 68.60 2.03 44.97 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 27 C 0.05 1.44 5.54 86.55 0.48 1.92 16 28 C -0.09 -1.82 3.18 -9.81 -0.03 -1.85 16 29 H 0.09 1.63 7.85 -2.39 -0.02 1.61 16 30 C -0.14 -2.68 8.90 71.98 0.64 -2.04 16 31 H 0.06 0.63 6.72 -2.38 -0.02 0.61 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.04 0.59 7.38 -2.39 -0.02 0.58 16 34 H 0.10 0.61 7.77 -2.39 -0.02 0.59 16 35 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.06 0.54 7.82 -2.39 -0.02 0.52 16 38 H 0.39 5.37 6.94 -74.06 -0.51 4.85 16 39 H 0.42 3.06 8.11 -92.71 -0.75 2.31 16 40 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.06 1.09 8.05 -2.39 -0.02 1.07 16 42 H 0.05 0.98 7.86 -2.39 -0.02 0.96 16 43 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.07 2.01 7.73 -2.39 -0.02 2.00 16 45 H 0.11 3.24 8.08 -2.39 -0.02 3.22 16 46 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 47 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 48 H 0.03 0.94 7.52 -2.38 -0.02 0.92 16 49 H 0.06 2.15 7.08 -2.39 -0.02 2.13 16 50 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 51 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.05 1.12 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -74.86 415.24 -2.33 -77.19 By element: Atomic # 1 Polarization: 36.93 SS G_CDS: -1.06 Total: 35.86 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 6.27 Total: 13.38 kcal Atomic # 7 Polarization: -103.81 SS G_CDS: -8.16 Total: -111.98 kcal Atomic # 8 Polarization: -58.02 SS G_CDS: -1.40 Total: -59.42 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -74.86 -2.33 -77.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101935987.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.877 kcal (2) G-P(sol) polarization free energy of solvation -74.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds