Wall clock time and date at job start Wed Apr 1 2020 01:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99680 * 2 1 4 4 C 1.53001 * 109.46831 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.47036 * 180.02562 * 4 3 2 6 6 O 1.21281 * 119.99973 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00147 * 180.02562 * 5 4 3 8 8 C 1.46505 * 120.00107 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46995 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.46728 * 179.97438 * 9 8 7 11 11 H 1.08994 * 110.64474 * 51.85331 * 10 9 8 12 12 C 1.54941 * 110.72523 * 288.50008 * 10 9 8 13 13 N 1.48528 * 103.22879 * 204.23041 * 12 10 9 14 14 C 1.46899 * 111.00191 * 159.72223 * 13 12 10 15 15 C 1.50693 * 109.47279 * 170.00127 * 14 13 12 16 16 O 1.21294 * 120.00613 * 359.97438 * 15 14 13 17 17 N 1.34782 * 120.00236 * 180.02562 * 15 14 13 18 18 C 1.37100 * 120.00184 * 179.97438 * 17 15 14 19 19 H 1.08000 * 119.99715 * 359.97438 * 18 17 15 20 20 C 1.38951 * 119.99782 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00026 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00016 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47108 * 59.99969 * 22 20 18 24 24 H 1.48497 * 109.47434 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47317 * 300.00705 * 22 20 18 26 26 C 1.47904 * 105.82054 * 39.20983 * 13 12 10 27 27 C 1.53997 * 107.05712 * 334.66803 * 26 13 12 28 28 H 1.09002 * 110.30886 * 120.14123 * 27 26 13 29 29 C 1.52997 * 110.39276 * 242.26904 * 27 26 13 30 30 H 1.08998 * 109.47492 * 299.99771 * 1 2 3 31 31 H 1.08998 * 109.47349 * 60.00153 * 1 2 3 32 32 H 1.09006 * 109.46709 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46863 * 60.00319 * 3 2 1 34 34 H 1.08991 * 109.47153 * 299.99875 * 3 2 1 35 35 H 1.08999 * 109.47408 * 60.00749 * 4 3 2 36 36 H 1.09000 * 109.47182 * 299.99931 * 4 3 2 37 37 H 0.97003 * 120.00064 * 359.97438 * 7 5 4 38 38 H 1.08999 * 109.46591 * 59.99382 * 8 7 5 39 39 H 1.08991 * 109.46910 * 299.99454 * 8 7 5 40 40 H 1.09007 * 109.46975 * 60.00099 * 9 8 7 41 41 H 1.09003 * 109.47351 * 300.00234 * 9 8 7 42 42 H 1.09004 * 110.66629 * 322.66611 * 12 10 9 43 43 H 1.08998 * 110.66439 * 85.79721 * 12 10 9 44 44 H 1.09005 * 109.46939 * 290.00043 * 14 13 12 45 45 H 1.09003 * 109.47125 * 50.00012 * 14 13 12 46 46 H 0.97003 * 119.99752 * 359.97438 * 17 15 14 47 47 H 0.96998 * 120.00203 * 180.02562 * 21 20 18 48 48 H 1.08998 * 109.91720 * 215.31594 * 26 13 12 49 49 H 1.08993 * 109.91976 * 94.02293 * 26 13 12 50 50 H 1.09003 * 109.47457 * 177.15588 * 29 27 26 51 51 H 1.09010 * 109.47124 * 297.15076 * 29 27 26 52 52 H 1.08994 * 109.47540 * 57.15078 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1483 2.5615 0.0013 6 8 3.4354 3.5426 0.0008 7 7 5.4887 2.7024 0.0014 8 6 6.0845 4.0408 0.0014 9 6 7.6098 3.9200 0.0022 10 6 8.2320 5.3177 0.0016 11 1 7.8123 5.9255 0.8032 12 6 8.0355 6.0048 -1.3732 13 7 9.1431 6.9932 -1.4205 14 6 9.4240 7.4033 -2.8029 15 6 10.3719 8.5747 -2.7966 16 8 10.7737 9.0243 -1.7441 17 7 10.7726 9.1238 -3.9605 18 6 11.6346 10.1899 -3.9547 19 1 11.9922 10.5900 -3.0175 20 6 12.0480 10.7555 -5.1547 21 7 11.6124 10.2688 -6.2950 22 14 13.2218 12.2085 -5.1469 23 1 14.4893 11.8173 -4.4792 24 1 13.5055 12.6232 -6.5443 25 1 12.6036 13.3404 -4.4108 26 6 10.3133 6.3166 -0.8202 27 6 9.7704 5.2317 0.1283 28 1 10.1211 4.2476 -0.1823 29 6 10.2014 5.5182 1.5681 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6885 1.8463 0.8900 34 1 1.6885 1.8464 -0.8899 35 1 3.8574 0.6438 -0.8891 36 1 3.8567 0.6440 0.8909 37 1 6.0589 1.9177 0.0014 38 1 5.7627 4.5817 0.8914 39 1 5.7631 4.5816 -0.8886 40 1 7.9318 3.3789 -0.8876 41 1 7.9310 3.3792 0.8924 42 1 8.1312 5.2807 -2.1823 43 1 7.0693 6.5074 -1.4174 44 1 9.8771 6.5722 -3.3434 45 1 8.4938 7.6912 -3.2926 46 1 10.4511 8.7645 -4.8022 47 1 11.9013 10.6634 -7.1327 48 1 10.9104 7.0354 -0.2592 49 1 10.9182 5.8574 -1.6020 50 1 9.7678 4.7709 2.2327 51 1 11.2886 5.4783 1.6367 52 1 9.8550 6.5093 1.8608 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102626919.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:23:51 Heat of formation + Delta-G solvation = -129.570704 kcal Electronic energy + Delta-G solvation = -29105.857429 eV Core-core repulsion = 24911.850652 eV Total energy + Delta-G solvation = -4194.006777 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.22448 -39.49189 -38.19642 -37.78838 -35.71340 -34.00832 -33.35216 -32.49974 -31.49404 -31.15987 -28.43110 -27.25840 -26.67630 -25.49028 -24.53094 -23.60562 -22.39145 -20.96907 -20.56778 -19.97641 -18.97645 -17.83646 -17.74919 -16.81592 -16.45690 -16.21877 -15.98377 -15.81485 -15.55484 -15.34784 -14.99526 -14.66634 -14.44382 -13.96634 -13.88542 -13.78278 -13.58106 -13.42992 -13.06312 -13.04367 -12.57656 -12.38498 -12.23521 -12.06399 -11.94319 -11.84396 -11.65188 -11.60400 -11.55510 -11.36452 -11.07624 -10.85480 -10.68828 -10.50984 -10.47606 -10.41728 -10.20313 -10.17801 -10.14239 -9.45000 -9.43233 -8.44914 -7.94084 -7.87950 -6.38046 -3.78681 2.25467 2.59264 3.22320 3.27582 3.32106 3.48377 3.95477 4.06517 4.27336 4.28192 4.38117 4.53143 4.55548 4.65756 4.72502 4.89154 4.90877 4.92489 4.96118 5.04905 5.19219 5.21072 5.22455 5.28097 5.30300 5.34218 5.35319 5.40141 5.46384 5.57036 5.64538 5.71910 5.77808 5.80220 5.85454 5.92617 6.02777 6.06751 6.13305 6.14917 6.32797 6.34015 6.52478 6.64386 7.07658 7.23594 7.28768 7.58223 7.82296 8.10078 8.66455 9.22157 9.58972 10.11506 10.79834 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019020 B = 0.001579 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.805112 B =17730.706067 C =18861.048093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.397 6.397 3 C 0.075 3.925 4 C -0.140 4.140 5 C 0.516 3.484 6 O -0.540 6.540 7 N -0.729 5.729 8 C 0.117 3.883 9 C -0.120 4.120 10 C -0.083 4.083 11 H 0.089 0.911 12 C 0.036 3.964 13 N -0.491 5.491 14 C 0.037 3.963 15 C 0.445 3.555 16 O -0.576 6.576 17 N -0.567 5.567 18 C -0.298 4.298 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.904 5.904 22 Si 0.930 3.070 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.048 3.952 27 C -0.098 4.098 28 H 0.071 0.929 29 C -0.140 4.140 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.401 0.599 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.042 0.958 43 H 0.081 0.919 44 H 0.049 0.951 45 H 0.087 0.913 46 H 0.391 0.609 47 H 0.271 0.729 48 H 0.092 0.908 49 H 0.038 0.962 50 H 0.050 0.950 51 H 0.055 0.945 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.068 -23.009 11.682 29.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.316 6.316 3 C -0.002 4.002 4 C -0.180 4.180 5 C 0.302 3.698 6 O -0.417 6.417 7 N -0.381 5.381 8 C -0.006 4.006 9 C -0.159 4.159 10 C -0.102 4.102 11 H 0.107 0.893 12 C -0.092 4.092 13 N -0.214 5.214 14 C -0.095 4.095 15 C 0.231 3.769 16 O -0.460 6.460 17 N -0.204 5.204 18 C -0.428 4.428 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.545 5.545 22 Si 0.757 3.243 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.080 4.080 27 C -0.117 4.117 28 H 0.089 0.911 29 C -0.197 4.197 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.236 0.764 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.060 0.940 43 H 0.099 0.901 44 H 0.066 0.934 45 H 0.106 0.894 46 H 0.224 0.776 47 H 0.081 0.919 48 H 0.111 0.889 49 H 0.056 0.944 50 H 0.069 0.931 51 H 0.074 0.926 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.275 -21.581 12.465 29.231 hybrid contribution 0.736 -0.358 -1.276 1.517 sum -14.538 -21.940 11.188 28.599 Atomic orbital electron populations 1.22745 0.80436 1.02813 1.00329 1.87792 1.20211 1.27984 1.95598 1.22164 0.91826 0.84274 1.01925 1.21476 0.95654 0.95154 1.05745 1.20405 0.82372 0.91091 0.75966 1.90746 1.60946 1.40817 1.49181 1.46022 1.06620 1.09793 1.75708 1.21471 0.92746 0.83463 1.02953 1.21825 0.93406 0.97853 1.02777 1.22075 0.95200 0.94636 0.98336 0.89300 1.23364 0.96387 0.93691 0.95798 1.64446 1.05030 1.35019 1.16940 1.22073 1.00058 0.97582 0.89790 1.19738 0.85704 0.86635 0.84857 1.90507 1.59760 1.64734 1.30974 1.41858 1.42062 1.29841 1.06647 1.19645 1.21331 1.07392 0.94399 0.88027 1.25239 0.98684 0.99340 0.94676 1.69604 1.45102 1.42259 0.97543 0.85930 0.80305 0.81045 0.77000 1.19969 1.21013 1.19916 1.22957 0.93108 0.95020 0.96912 1.22067 0.94419 0.98760 0.96440 0.91068 1.21809 1.01131 1.01855 0.94945 0.93885 0.93838 0.89480 0.92328 0.92269 0.87916 0.87969 0.76441 0.91168 0.90990 0.91163 0.90993 0.93986 0.90108 0.93352 0.89437 0.77566 0.91899 0.88950 0.94393 0.93108 0.92631 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.40 -3.20 10.70 -35.23 -0.38 -3.57 16 3 C 0.08 0.58 5.23 37.16 0.19 0.77 16 4 C -0.14 -0.85 6.07 -27.88 -0.17 -1.02 16 5 C 0.52 4.49 7.83 -10.98 -0.09 4.40 16 6 O -0.54 -7.03 15.98 5.56 0.09 -6.94 16 7 N -0.73 -4.88 5.56 -60.29 -0.33 -5.22 16 8 C 0.12 0.94 5.57 -4.04 -0.02 0.92 16 9 C -0.12 -0.85 4.70 -26.73 -0.13 -0.97 16 10 C -0.08 -0.83 2.58 -88.76 -0.23 -1.06 16 11 H 0.09 0.95 7.86 -51.93 -0.41 0.54 16 12 C 0.04 0.44 5.37 -1.90 -0.01 0.43 16 13 N -0.49 -8.21 4.91 -231.89 -1.14 -9.35 16 14 C 0.04 0.67 5.27 -4.98 -0.03 0.64 16 15 C 0.45 10.72 7.61 -10.99 -0.08 10.63 16 16 O -0.58 -15.81 14.87 5.54 0.08 -15.73 16 17 N -0.57 -14.59 5.29 -10.96 -0.06 -14.65 16 18 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 19 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.82 13.05 55.50 0.72 -24.09 16 22 Si 0.93 21.28 29.55 -169.99 -5.02 16.25 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 C 0.05 0.75 5.53 -2.75 -0.02 0.73 16 27 C -0.10 -1.09 3.16 -89.26 -0.28 -1.37 16 28 H 0.07 0.70 7.85 -51.93 -0.41 0.29 16 29 C -0.14 -1.45 8.89 37.16 0.33 -1.12 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 34 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 35 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.40 1.51 8.47 -40.82 -0.35 1.16 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.69 7.66 -51.93 -0.40 0.29 16 40 H 0.07 0.47 7.99 -51.93 -0.42 0.05 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.04 0.48 7.82 -51.93 -0.41 0.07 16 43 H 0.08 0.99 8.11 -51.93 -0.42 0.57 16 44 H 0.05 0.81 7.73 -51.93 -0.40 0.40 16 45 H 0.09 1.46 8.08 -51.93 -0.42 1.04 16 46 H 0.39 9.64 7.90 -40.82 -0.32 9.31 16 47 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.09 1.70 7.07 -51.93 -0.37 1.34 16 49 H 0.04 0.60 7.52 -51.93 -0.39 0.21 16 50 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 51 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 52 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 422.40 15.07 6.37 6.37 Total: -1.00 -34.68 422.40 -8.61 -43.28 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -9.28 Total: 7.44 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 0.35 Total: 6.22 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.81 Total: -53.32 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.21 Total: -26.24 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -34.68 -8.61 -43.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102626919.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.287 kcal (2) G-P(sol) polarization free energy of solvation -34.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds