Wall clock time and date at job start Wed Apr 1 2020 01:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99896 * 2 1 4 4 H 1.08997 * 109.46814 * 329.99826 * 3 2 1 5 5 C 1.52994 * 109.47319 * 90.00163 * 3 2 1 6 6 C 1.50701 * 109.46907 * 210.00085 * 3 2 1 7 7 O 1.21285 * 119.99824 * 354.99647 * 6 3 2 8 8 N 1.34770 * 120.00151 * 174.99952 * 6 3 2 9 9 C 1.46501 * 120.00475 * 179.97438 * 8 6 3 10 10 C 1.53002 * 109.47407 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.46899 * 180.02562 * 10 9 8 12 12 H 1.09000 * 110.28643 * 52.87736 * 11 10 9 13 13 C 1.54377 * 110.32412 * 290.63702 * 11 10 9 14 14 N 1.48557 * 104.59509 * 217.25451 * 13 11 10 15 15 C 1.46895 * 111.00065 * 159.04384 * 14 13 11 16 16 C 1.50698 * 109.47456 * 61.06901 * 15 14 13 17 17 O 1.21292 * 119.99789 * 6.06118 * 16 15 14 18 18 N 1.34780 * 120.00320 * 186.05883 * 16 15 14 19 19 C 1.37088 * 120.00053 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00597 * 0.02562 * 19 18 16 21 21 C 1.38955 * 120.00223 * 180.02562 * 19 18 16 22 22 N 1.31410 * 119.99658 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00400 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47300 * 60.00070 * 23 21 19 25 25 H 1.48500 * 109.47236 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47176 * 300.00194 * 23 21 19 27 27 C 1.48558 * 104.22192 * 39.48189 * 14 13 11 28 28 C 1.54259 * 110.31726 * 175.00287 * 11 10 9 29 29 H 1.08994 * 110.32912 * 359.97438 * 28 11 10 30 30 C 1.53006 * 110.32009 * 237.88891 * 28 11 10 31 31 H 1.09005 * 109.47393 * 300.00323 * 1 2 3 32 32 H 1.08997 * 109.47703 * 60.00059 * 1 2 3 33 33 H 1.09003 * 109.47294 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47361 * 59.99507 * 5 3 2 35 35 H 1.08997 * 109.47586 * 179.97438 * 5 3 2 36 36 H 1.09009 * 109.47217 * 299.99693 * 5 3 2 37 37 H 0.97008 * 120.00108 * 359.97438 * 8 6 3 38 38 H 1.09001 * 109.46984 * 300.00098 * 9 8 6 39 39 H 1.09005 * 109.46708 * 60.00307 * 9 8 6 40 40 H 1.09001 * 109.47283 * 300.00104 * 10 9 8 41 41 H 1.09005 * 109.46782 * 60.00541 * 10 9 8 42 42 H 1.09001 * 110.41076 * 336.03074 * 13 11 10 43 43 H 1.08999 * 110.40916 * 98.47082 * 13 11 10 44 44 H 1.09002 * 109.47453 * 181.07027 * 15 14 13 45 45 H 1.09002 * 109.47105 * 301.06730 * 15 14 13 46 46 H 0.96998 * 119.99925 * 0.02562 * 18 16 15 47 47 H 0.97003 * 120.00244 * 179.97438 * 22 21 19 48 48 H 1.08997 * 110.41136 * 201.73526 * 27 14 13 49 49 H 1.08999 * 110.41121 * 79.30090 * 27 14 13 50 50 H 1.08999 * 109.46961 * 60.00783 * 30 28 11 51 51 H 1.09003 * 109.46857 * 180.02562 * 30 28 11 52 52 H 1.08997 * 109.47763 * 300.00648 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 -0.5139 5 6 2.2177 1.7714 1.4424 6 6 3.3386 1.2639 -0.7104 7 8 3.7896 0.2044 -1.0913 8 7 4.0254 2.4039 -0.9225 9 6 5.3170 2.3635 -1.6126 10 6 5.8809 3.7815 -1.7231 11 6 7.2295 3.7392 -2.4444 12 1 7.1342 3.2114 -3.3933 13 6 8.2925 3.0597 -1.5547 14 7 9.5414 3.8205 -1.8161 15 6 10.5044 3.6438 -0.7210 16 6 10.8681 2.1862 -0.6022 17 8 10.4610 1.3907 -1.4223 18 7 11.6459 1.7664 0.4154 19 6 11.9772 0.4406 0.5232 20 1 11.6153 -0.2677 -0.2075 21 6 12.7785 0.0077 1.5726 22 7 13.2184 0.8692 2.4620 23 14 13.2294 -1.7991 1.7199 24 1 13.9686 -2.2255 0.5046 25 1 14.0856 -1.9997 2.9165 26 1 11.9919 -2.6086 1.8560 27 6 9.0947 5.2343 -1.9094 28 6 7.7573 5.1698 -2.6777 29 1 7.0554 5.9021 -2.2788 30 6 7.9873 5.4145 -4.1705 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 2.8829 1.0775 1.9563 35 1 2.6614 2.7669 1.4425 36 1 1.2568 1.8015 1.9563 37 1 3.6645 3.2513 -0.6181 38 1 6.0106 1.7391 -1.0493 39 1 5.1825 1.9475 -2.6111 40 1 5.1872 4.4055 -2.2867 41 1 6.0153 4.1978 -0.7247 42 1 8.0137 3.1362 -0.5037 43 1 8.4165 2.0153 -1.8410 44 1 11.4019 4.2264 -0.9288 45 1 10.0585 3.9843 0.2135 46 1 11.9712 2.4025 1.0715 47 1 13.7776 0.5671 3.1948 48 1 9.8229 5.8272 -2.4627 49 1 8.9416 5.6510 -0.9140 50 1 7.0473 5.2902 -4.7081 51 1 8.3600 6.4280 -4.3193 52 1 8.7187 4.6997 -4.5475 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102730397.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:24:01 Heat of formation + Delta-G solvation = -122.166909 kcal Electronic energy + Delta-G solvation = -30180.757655 eV Core-core repulsion = 25987.071930 eV Total energy + Delta-G solvation = -4193.685724 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.21206 -39.53168 -37.97497 -37.68878 -35.47929 -34.01965 -33.30956 -32.34883 -31.19667 -31.13171 -28.12562 -27.17920 -27.02495 -25.54572 -24.63365 -23.77717 -22.31469 -20.84322 -20.62149 -19.67476 -19.10247 -17.82649 -17.67498 -17.27159 -16.14011 -16.09674 -15.70154 -15.40131 -15.20166 -15.10728 -14.76126 -14.58297 -14.34084 -13.91181 -13.78034 -13.53020 -13.33296 -13.29414 -13.01218 -12.92550 -12.77252 -12.59624 -12.26377 -12.19067 -12.00316 -11.77211 -11.54345 -11.50935 -11.44386 -11.23026 -11.03749 -10.84847 -10.68210 -10.48374 -10.42556 -10.36411 -10.32600 -10.17205 -9.68824 -9.43374 -9.23011 -8.39955 -7.99364 -7.89214 -6.38018 -3.78498 2.44698 2.62787 3.24057 3.29056 3.34254 3.64000 3.94728 4.10790 4.30199 4.35568 4.48946 4.51010 4.60371 4.63372 4.76151 4.89771 4.97776 5.00445 5.07153 5.12548 5.17749 5.26397 5.28774 5.29845 5.31656 5.43957 5.52865 5.56567 5.61951 5.68906 5.71056 5.78479 5.83286 5.92398 5.94030 5.98826 6.03770 6.12408 6.21949 6.25519 6.31782 6.41824 6.59473 6.66037 7.21081 7.28421 7.29826 7.59038 8.06057 8.10098 8.65747 9.22126 9.58210 10.10264 10.79754 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007571 B = 0.002729 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3697.620948 B =10258.368656 C =13225.464375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.070 3.930 4 H 0.085 0.915 5 C -0.171 4.171 6 C 0.509 3.491 7 O -0.512 6.512 8 N -0.729 5.729 9 C 0.116 3.884 10 C -0.120 4.120 11 C -0.087 4.087 12 H 0.085 0.915 13 C 0.041 3.959 14 N -0.484 5.484 15 C 0.035 3.965 16 C 0.443 3.557 17 O -0.577 6.577 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.273 1.273 27 C 0.032 3.968 28 C -0.088 4.088 29 H 0.072 0.928 30 C -0.140 4.140 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.398 0.602 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.036 0.964 43 H 0.104 0.896 44 H 0.089 0.911 45 H 0.046 0.954 46 H 0.391 0.609 47 H 0.271 0.729 48 H 0.079 0.921 49 H 0.039 0.961 50 H 0.050 0.950 51 H 0.051 0.949 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.866 12.866 -4.163 26.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.009 3.991 4 H 0.103 0.897 5 C -0.229 4.229 6 C 0.293 3.707 7 O -0.386 6.386 8 N -0.383 5.383 9 C -0.006 4.006 10 C -0.158 4.158 11 C -0.107 4.107 12 H 0.103 0.897 13 C -0.087 4.087 14 N -0.208 5.208 15 C -0.097 4.097 16 C 0.228 3.772 17 O -0.461 6.461 18 N -0.201 5.201 19 C -0.427 4.427 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.545 5.545 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.096 4.096 28 C -0.107 4.107 29 H 0.090 0.910 30 C -0.197 4.197 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.232 0.768 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.055 0.945 43 H 0.122 0.878 44 H 0.108 0.892 45 H 0.064 0.936 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.097 0.903 49 H 0.057 0.943 50 H 0.070 0.930 51 H 0.070 0.930 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -22.276 11.125 -5.310 25.459 hybrid contribution -0.195 0.534 1.652 1.747 sum -22.471 11.660 -3.658 25.579 Atomic orbital electron populations 1.22888 0.80633 1.03357 0.99926 1.88085 1.19623 1.25057 1.94904 1.21931 0.93493 0.86913 0.96781 0.89728 1.22237 1.03500 1.02131 0.95031 1.20388 0.86256 0.84228 0.79788 1.90774 1.68944 1.29609 1.49269 1.45945 1.22335 1.09164 1.60867 1.21487 0.83556 0.97839 0.97764 1.21889 0.96937 0.95665 1.01280 1.21982 0.93023 0.96014 0.99663 0.89709 1.23297 0.87818 1.00831 0.96751 1.65161 1.10015 1.04826 1.40798 1.22066 0.97446 0.97367 0.92813 1.19720 0.84227 0.89032 0.84228 1.90502 1.57223 1.55565 1.42783 1.41857 1.44476 1.09633 1.24153 1.19651 1.28279 0.84355 1.10439 0.87965 1.25250 0.96962 1.00085 0.95639 1.69605 1.35603 1.34811 1.14470 0.85930 0.78599 0.82173 0.77620 1.19873 1.21007 1.19867 1.23244 0.96240 0.91499 0.98662 1.21891 0.96160 0.96207 0.96464 0.90975 1.21807 1.01629 1.01521 0.94736 0.93834 0.93873 0.89067 0.90783 0.90918 0.91198 0.76848 0.90607 0.91152 0.91261 0.91312 0.94548 0.87771 0.89235 0.93596 0.77547 0.91876 0.90256 0.94294 0.93050 0.93018 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.82 101.05 1.09 1.29 16 2 O -0.36 -4.12 9.89 -55.09 -0.54 -4.67 16 3 C 0.07 0.63 3.13 -27.89 -0.09 0.55 16 4 H 0.08 0.50 7.79 -51.93 -0.40 0.09 16 5 C -0.17 -1.20 9.48 37.15 0.35 -0.85 16 6 C 0.51 6.34 7.18 -10.99 -0.08 6.26 16 7 O -0.51 -9.24 16.51 -14.31 -0.24 -9.47 16 8 N -0.73 -6.90 5.52 -60.29 -0.33 -7.24 16 9 C 0.12 1.31 5.54 -4.04 -0.02 1.29 16 10 C -0.12 -1.08 4.51 -26.73 -0.12 -1.20 16 11 C -0.09 -1.02 2.71 -89.24 -0.24 -1.26 16 12 H 0.08 1.04 7.71 -51.93 -0.40 0.64 16 13 C 0.04 0.66 4.39 -2.18 -0.01 0.65 16 14 N -0.48 -8.09 5.18 -231.42 -1.20 -9.29 16 15 C 0.03 0.64 5.38 -4.98 -0.03 0.61 16 16 C 0.44 10.64 7.43 -10.98 -0.08 10.56 16 17 O -0.58 -15.78 14.01 5.55 0.08 -15.71 16 18 N -0.56 -14.58 5.29 -10.96 -0.06 -14.64 16 19 C -0.30 -8.46 9.68 -14.94 -0.14 -8.61 16 20 H 0.10 3.05 7.16 -52.48 -0.38 2.68 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.97 13.05 55.50 0.72 -24.25 16 23 Si 0.93 21.61 29.55 -169.99 -5.02 16.58 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 27 C 0.03 0.40 6.04 -2.18 -0.01 0.38 16 28 C -0.09 -0.91 3.30 -89.24 -0.29 -1.21 16 29 H 0.07 0.62 7.71 -51.93 -0.40 0.22 16 30 C -0.14 -1.36 8.91 37.16 0.33 -1.03 16 31 H 0.04 0.22 7.87 -51.93 -0.41 -0.19 16 32 H 0.04 0.24 8.08 -51.93 -0.42 -0.18 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.36 7.92 -51.93 -0.41 -0.05 16 36 H 0.07 0.38 7.87 -51.92 -0.41 -0.03 16 37 H 0.40 2.30 8.26 -40.82 -0.34 1.96 16 38 H 0.08 1.08 7.58 -51.93 -0.39 0.68 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.60 7.98 -51.93 -0.41 0.18 16 42 H 0.04 0.59 7.56 -51.93 -0.39 0.19 16 43 H 0.10 2.08 6.53 -51.93 -0.34 1.74 16 44 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.05 0.77 7.98 -51.93 -0.41 0.35 16 46 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 47 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 48 H 0.08 0.94 7.86 -51.93 -0.41 0.53 16 49 H 0.04 0.46 7.92 -51.93 -0.41 0.04 16 50 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 52 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 419.45 15.07 6.32 6.32 Total: -1.00 -36.09 419.45 -8.89 -44.98 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -9.18 Total: 9.44 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 0.56 Total: 7.94 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.87 Total: -55.42 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -0.70 Total: -29.85 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -36.09 -8.89 -44.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102730397.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.186 kcal (2) G-P(sol) polarization free energy of solvation -36.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds