Wall clock time and date at job start Wed Apr 1 2020 01:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99896 * 2 1 4 4 H 1.08997 * 109.46814 * 329.99826 * 3 2 1 5 5 C 1.52994 * 109.47319 * 90.00163 * 3 2 1 6 6 C 1.50701 * 109.46907 * 210.00085 * 3 2 1 7 7 O 1.21285 * 119.99824 * 354.99647 * 6 3 2 8 8 N 1.34770 * 120.00151 * 174.99952 * 6 3 2 9 9 C 1.46501 * 120.00475 * 179.97438 * 8 6 3 10 10 C 1.53002 * 109.47407 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.46899 * 180.02562 * 10 9 8 12 12 H 1.09000 * 110.28643 * 52.87736 * 11 10 9 13 13 C 1.54377 * 110.32412 * 290.63702 * 11 10 9 14 14 N 1.48557 * 104.59509 * 217.25451 * 13 11 10 15 15 C 1.46895 * 111.00065 * 159.04384 * 14 13 11 16 16 C 1.50698 * 109.47456 * 61.06901 * 15 14 13 17 17 O 1.21292 * 119.99789 * 6.06118 * 16 15 14 18 18 N 1.34780 * 120.00320 * 186.05883 * 16 15 14 19 19 C 1.37088 * 120.00053 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00597 * 0.02562 * 19 18 16 21 21 C 1.38955 * 120.00223 * 180.02562 * 19 18 16 22 22 N 1.31410 * 119.99658 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00400 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47300 * 60.00070 * 23 21 19 25 25 H 1.48500 * 109.47236 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47176 * 300.00194 * 23 21 19 27 27 C 1.48558 * 104.22192 * 39.48189 * 14 13 11 28 28 C 1.54259 * 110.31726 * 175.00287 * 11 10 9 29 29 H 1.08994 * 110.32912 * 359.97438 * 28 11 10 30 30 C 1.53006 * 110.32009 * 237.88891 * 28 11 10 31 31 H 1.09005 * 109.47393 * 300.00323 * 1 2 3 32 32 H 1.08997 * 109.47703 * 60.00059 * 1 2 3 33 33 H 1.09003 * 109.47294 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47361 * 59.99507 * 5 3 2 35 35 H 1.08997 * 109.47586 * 179.97438 * 5 3 2 36 36 H 1.09009 * 109.47217 * 299.99693 * 5 3 2 37 37 H 0.97008 * 120.00108 * 359.97438 * 8 6 3 38 38 H 1.09001 * 109.46984 * 300.00098 * 9 8 6 39 39 H 1.09005 * 109.46708 * 60.00307 * 9 8 6 40 40 H 1.09001 * 109.47283 * 300.00104 * 10 9 8 41 41 H 1.09005 * 109.46782 * 60.00541 * 10 9 8 42 42 H 1.09001 * 110.41076 * 336.03074 * 13 11 10 43 43 H 1.08999 * 110.40916 * 98.47082 * 13 11 10 44 44 H 1.09002 * 109.47453 * 181.07027 * 15 14 13 45 45 H 1.09002 * 109.47105 * 301.06730 * 15 14 13 46 46 H 0.96998 * 119.99925 * 0.02562 * 18 16 15 47 47 H 0.97003 * 120.00244 * 179.97438 * 22 21 19 48 48 H 1.08997 * 110.41136 * 201.73526 * 27 14 13 49 49 H 1.08999 * 110.41121 * 79.30090 * 27 14 13 50 50 H 1.08999 * 109.46961 * 60.00783 * 30 28 11 51 51 H 1.09003 * 109.46857 * 180.02562 * 30 28 11 52 52 H 1.08997 * 109.47763 * 300.00648 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 -0.5139 5 6 2.2177 1.7714 1.4424 6 6 3.3386 1.2639 -0.7104 7 8 3.7896 0.2044 -1.0913 8 7 4.0254 2.4039 -0.9225 9 6 5.3170 2.3635 -1.6126 10 6 5.8809 3.7815 -1.7231 11 6 7.2295 3.7392 -2.4444 12 1 7.1342 3.2114 -3.3933 13 6 8.2925 3.0597 -1.5547 14 7 9.5414 3.8205 -1.8161 15 6 10.5044 3.6438 -0.7210 16 6 10.8681 2.1862 -0.6022 17 8 10.4610 1.3907 -1.4223 18 7 11.6459 1.7664 0.4154 19 6 11.9772 0.4406 0.5232 20 1 11.6153 -0.2677 -0.2075 21 6 12.7785 0.0077 1.5726 22 7 13.2184 0.8692 2.4620 23 14 13.2294 -1.7991 1.7199 24 1 13.9686 -2.2255 0.5046 25 1 14.0856 -1.9997 2.9165 26 1 11.9919 -2.6086 1.8560 27 6 9.0947 5.2343 -1.9094 28 6 7.7573 5.1698 -2.6777 29 1 7.0554 5.9021 -2.2788 30 6 7.9873 5.4145 -4.1705 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 2.8829 1.0775 1.9563 35 1 2.6614 2.7669 1.4425 36 1 1.2568 1.8015 1.9563 37 1 3.6645 3.2513 -0.6181 38 1 6.0106 1.7391 -1.0493 39 1 5.1825 1.9475 -2.6111 40 1 5.1872 4.4055 -2.2867 41 1 6.0153 4.1978 -0.7247 42 1 8.0137 3.1362 -0.5037 43 1 8.4165 2.0153 -1.8410 44 1 11.4019 4.2264 -0.9288 45 1 10.0585 3.9843 0.2135 46 1 11.9712 2.4025 1.0715 47 1 13.7776 0.5671 3.1948 48 1 9.8229 5.8272 -2.4627 49 1 8.9416 5.6510 -0.9140 50 1 7.0473 5.2902 -4.7081 51 1 8.3600 6.4280 -4.3193 52 1 8.7187 4.6997 -4.5475 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102730397.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:24:00 Heat of formation + Delta-G solvation = -151.000448 kcal Electronic energy + Delta-G solvation = -30182.007971 eV Core-core repulsion = 25987.071930 eV Total energy + Delta-G solvation = -4194.936040 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.17318 -40.79158 -39.53173 -38.63389 -36.56044 -35.98421 -34.55406 -33.30019 -33.15424 -31.92183 -29.45459 -28.20687 -27.70662 -26.83348 -26.05614 -24.73504 -23.43031 -21.89734 -21.53028 -21.00795 -20.58673 -19.89041 -18.50708 -18.03102 -17.76973 -17.01391 -16.78828 -16.71568 -16.37404 -16.19140 -16.13739 -15.73700 -15.59115 -15.53487 -15.07473 -14.60638 -14.32092 -14.23902 -14.07957 -13.98584 -13.66446 -13.62640 -13.43454 -13.34360 -13.16023 -12.97340 -12.83671 -12.73888 -12.49418 -12.46578 -12.31525 -12.15576 -12.14648 -11.90704 -11.57459 -11.54909 -11.43496 -11.32825 -11.07211 -10.55187 -10.28844 -10.19294 -10.03236 -9.32182 -8.49375 -5.97797 1.36453 1.37996 1.48996 1.50140 1.84285 2.02854 2.26429 2.88262 3.00309 3.17228 3.34693 3.60530 3.65495 3.66817 3.88939 3.97653 4.00518 4.12881 4.17264 4.29957 4.36767 4.38062 4.43390 4.47880 4.53299 4.53860 4.58287 4.64639 4.71094 4.75392 4.77649 4.81731 4.84782 4.92854 5.01308 5.05778 5.13487 5.17393 5.27430 5.32690 5.33684 5.37887 5.38452 5.56147 5.87190 6.00221 6.05917 6.13007 6.52570 6.58436 7.10592 7.19861 7.53598 8.10413 8.67987 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007571 B = 0.002729 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3697.620948 B =10258.368656 C =13225.464375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.403 6.403 3 C 0.073 3.927 4 H 0.126 0.874 5 C -0.167 4.167 6 C 0.499 3.501 7 O -0.583 6.583 8 N -0.707 5.707 9 C 0.119 3.881 10 C -0.103 4.103 11 C -0.080 4.080 12 H 0.073 0.927 13 C 0.043 3.957 14 N -0.509 5.509 15 C 0.048 3.952 16 C 0.438 3.562 17 O -0.617 6.617 18 N -0.574 5.574 19 C -0.333 4.333 20 H 0.075 0.925 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.990 3.010 24 H -0.272 1.272 25 H -0.266 1.266 26 H -0.275 1.275 27 C 0.030 3.970 28 C -0.078 4.078 29 H 0.109 0.891 30 C -0.137 4.137 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.043 0.957 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.421 0.579 38 H 0.034 0.966 39 H 0.056 0.944 40 H 0.108 0.892 41 H 0.083 0.917 42 H 0.032 0.968 43 H 0.049 0.951 44 H 0.110 0.890 45 H 0.067 0.933 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.089 0.911 49 H 0.055 0.945 50 H 0.065 0.935 51 H 0.068 0.932 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.813 16.344 -3.585 29.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.322 6.322 3 C 0.012 3.988 4 H 0.143 0.857 5 C -0.224 4.224 6 C 0.286 3.714 7 O -0.462 6.462 8 N -0.362 5.362 9 C -0.005 4.005 10 C -0.141 4.141 11 C -0.100 4.100 12 H 0.091 0.909 13 C -0.085 4.085 14 N -0.234 5.234 15 C -0.084 4.084 16 C 0.225 3.775 17 O -0.503 6.503 18 N -0.212 5.212 19 C -0.463 4.463 20 H 0.093 0.907 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.814 3.186 24 H -0.197 1.197 25 H -0.191 1.191 26 H -0.201 1.201 27 C -0.097 4.097 28 C -0.097 4.097 29 H 0.127 0.873 30 C -0.195 4.195 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.063 0.937 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.259 0.741 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.126 0.874 41 H 0.101 0.899 42 H 0.050 0.950 43 H 0.068 0.932 44 H 0.127 0.873 45 H 0.085 0.915 46 H 0.230 0.770 47 H 0.088 0.912 48 H 0.107 0.893 49 H 0.074 0.926 50 H 0.084 0.916 51 H 0.087 0.913 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -24.240 14.696 -4.708 28.735 hybrid contribution 0.396 -0.542 1.427 1.576 sum -23.844 14.155 -3.282 27.922 Atomic orbital electron populations 1.23095 0.78487 1.04096 1.01673 1.88036 1.22144 1.26842 1.95191 1.22096 0.91816 0.87040 0.97827 0.85683 1.22251 1.04298 1.02477 0.93398 1.21291 0.87490 0.83696 0.78916 1.90740 1.70860 1.32207 1.52351 1.45750 1.21198 1.09684 1.59563 1.21326 0.83735 0.99047 0.96416 1.21806 0.95776 0.94188 1.02354 1.21918 0.93083 0.96641 0.98358 0.90902 1.23124 0.89482 0.98579 0.97325 1.65106 1.10165 1.07913 1.40169 1.21933 0.99054 0.92723 0.94660 1.20834 0.82446 0.91479 0.82710 1.90487 1.58172 1.57608 1.44003 1.41919 1.45260 1.08977 1.24998 1.19581 1.30173 0.85454 1.11096 0.90703 1.26003 0.96186 1.04156 0.94790 1.69657 1.35466 1.36323 1.14576 0.85036 0.78317 0.77141 0.78132 1.19685 1.19067 1.20051 1.23394 0.97586 0.88562 1.00133 1.21922 0.95545 0.95469 0.96777 0.87325 1.21790 1.01727 1.01660 0.94294 0.91633 0.92417 0.89066 0.93739 0.88419 0.88929 0.74094 0.94794 0.92581 0.87391 0.89874 0.95017 0.93215 0.87251 0.91524 0.77012 0.91229 0.89291 0.92632 0.91555 0.91297 0.94393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.82 113.37 1.23 1.50 16 2 O -0.40 -9.21 9.89 -129.99 -1.28 -10.49 16 3 C 0.07 1.21 3.13 29.85 0.09 1.31 16 4 H 0.13 1.02 7.79 -2.39 -0.02 1.01 16 5 C -0.17 -2.00 9.48 71.98 0.68 -1.32 16 6 C 0.50 12.63 7.18 87.66 0.63 13.26 16 7 O -0.58 -22.61 16.51 15.95 0.26 -22.35 16 8 N -0.71 -12.67 5.52 -463.05 -2.55 -15.23 16 9 C 0.12 2.73 5.54 86.38 0.48 3.21 16 10 C -0.10 -1.61 4.51 30.60 0.14 -1.47 16 11 C -0.08 -1.79 2.71 -9.90 -0.03 -1.82 16 12 H 0.07 1.80 7.71 -2.39 -0.02 1.79 16 13 C 0.04 1.44 4.39 86.45 0.38 1.82 16 14 N -0.51 -16.96 5.18 -886.08 -4.59 -21.55 16 15 C 0.05 1.74 5.38 85.56 0.46 2.20 16 16 C 0.44 21.97 7.43 87.66 0.65 22.62 16 17 O -0.62 -36.02 14.01 -3.07 -0.04 -36.07 16 18 N -0.57 -30.79 5.29 -306.98 -1.62 -32.41 16 19 C -0.33 -19.78 9.68 84.04 0.81 -18.97 16 20 H 0.07 4.76 7.16 -2.91 -0.02 4.74 16 21 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 22 N -0.92 -50.96 13.05 21.66 0.28 -50.68 16 23 Si 0.99 44.86 29.55 68.60 2.03 46.89 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 25 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 26 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 27 C 0.03 0.67 6.04 86.45 0.52 1.20 16 28 C -0.08 -1.36 3.30 -9.90 -0.03 -1.39 16 29 H 0.11 1.20 7.71 -2.39 -0.02 1.18 16 30 C -0.14 -2.28 8.91 71.98 0.64 -1.64 16 31 H 0.07 0.49 7.87 -2.38 -0.02 0.47 16 32 H 0.06 0.52 8.08 -2.39 -0.02 0.50 16 33 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 34 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.10 0.65 7.92 -2.39 -0.02 0.63 16 36 H 0.09 0.71 7.87 -2.38 -0.02 0.69 16 37 H 0.42 3.48 8.26 -92.70 -0.77 2.71 16 38 H 0.03 1.07 7.58 -2.39 -0.02 1.05 16 39 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.08 1.13 7.98 -2.38 -0.02 1.11 16 42 H 0.03 1.06 7.56 -2.39 -0.02 1.04 16 43 H 0.05 2.19 6.53 -2.39 -0.02 2.18 16 44 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 45 H 0.07 2.15 7.98 -2.39 -0.02 2.13 16 46 H 0.40 20.05 7.90 -92.71 -0.73 19.32 16 47 H 0.28 14.42 8.31 -92.71 -0.77 13.65 16 48 H 0.09 1.82 7.86 -2.39 -0.02 1.80 16 49 H 0.06 1.08 7.92 -2.39 -0.02 1.06 16 50 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 52 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -86.95 419.45 -0.98 -87.93 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: -0.58 Total: 33.62 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: 7.12 Total: 20.33 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -8.49 Total: -119.87 kcal Atomic # 8 Polarization: -67.84 SS G_CDS: -1.06 Total: -68.91 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -86.95 -0.98 -87.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102730397.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.069 kcal (2) G-P(sol) polarization free energy of solvation -86.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds