Wall clock time and date at job start Wed Apr 1 2020 01:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 H 1.08994 * 109.46677 * 29.99907 * 3 2 1 5 5 C 1.53001 * 109.47018 * 270.00354 * 3 2 1 6 6 C 1.50697 * 109.46859 * 150.00027 * 3 2 1 7 7 O 1.21280 * 120.00613 * 5.00509 * 6 3 2 8 8 N 1.34776 * 119.99644 * 184.99578 * 6 3 2 9 9 C 1.46502 * 120.00249 * 179.97438 * 8 6 3 10 10 C 1.52994 * 109.47437 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47456 * 180.02562 * 10 9 8 12 12 H 1.09010 * 110.64088 * 56.69987 * 11 10 9 13 13 C 1.54937 * 110.72498 * 293.55451 * 11 10 9 14 14 N 1.48533 * 103.22685 * 204.22422 * 13 11 10 15 15 C 1.46894 * 111.00231 * 159.71501 * 14 13 11 16 16 C 1.50696 * 109.47580 * 169.99720 * 15 14 13 17 17 O 1.21297 * 119.99692 * 0.02562 * 16 15 14 18 18 N 1.34781 * 120.00620 * 180.02562 * 16 15 14 19 19 C 1.37095 * 120.00037 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00188 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99579 * 180.02562 * 19 18 16 22 22 N 1.31415 * 120.00424 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99943 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47030 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47469 * 119.99657 * 23 21 19 26 26 H 1.48506 * 109.46860 * 239.99892 * 23 21 19 27 27 C 1.47903 * 105.82197 * 39.20608 * 14 13 11 28 28 C 1.53995 * 107.05520 * 334.66739 * 27 14 13 29 29 H 1.08998 * 110.31315 * 120.14304 * 28 27 14 30 30 C 1.53000 * 110.31198 * 242.31284 * 28 27 14 31 31 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 33 33 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 34 34 H 1.09001 * 109.46736 * 179.97438 * 5 3 2 35 35 H 1.08998 * 109.46767 * 299.99763 * 5 3 2 36 36 H 1.08995 * 109.47219 * 60.00003 * 5 3 2 37 37 H 0.97007 * 120.00221 * 0.02562 * 8 6 3 38 38 H 1.08996 * 109.47430 * 300.01234 * 9 8 6 39 39 H 1.09003 * 109.46551 * 60.00539 * 9 8 6 40 40 H 1.09001 * 109.47532 * 300.00378 * 10 9 8 41 41 H 1.09003 * 109.47015 * 60.00572 * 10 9 8 42 42 H 1.09000 * 110.66360 * 322.65639 * 13 11 10 43 43 H 1.08995 * 110.67240 * 85.78474 * 13 11 10 44 44 H 1.09000 * 109.47703 * 290.00395 * 15 14 13 45 45 H 1.09007 * 109.47056 * 50.00297 * 15 14 13 46 46 H 0.96998 * 119.99297 * 0.02562 * 18 16 15 47 47 H 0.96992 * 120.00047 * 180.02562 * 22 21 19 48 48 H 1.08994 * 109.91952 * 94.02093 * 27 14 13 49 49 H 1.09004 * 109.91737 * 215.12463 * 27 14 13 50 50 H 1.08999 * 109.47444 * 175.71771 * 30 28 27 51 51 H 1.09007 * 109.46780 * 295.71759 * 30 28 27 52 52 H 1.09000 * 109.47191 * 55.71574 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3387 1.2637 0.7104 7 8 3.7898 0.2044 1.0913 8 7 4.0256 2.4038 0.9223 9 6 5.3167 2.3635 1.6134 10 6 5.8808 3.7814 1.7235 11 6 7.2294 3.7392 2.4447 12 1 7.9206 3.0728 1.9284 13 6 7.0485 3.3046 3.9209 14 7 8.2427 3.8780 4.5927 15 6 8.0270 3.9938 6.0411 16 6 9.3282 4.3425 6.7166 17 8 10.3361 4.4815 6.0562 18 7 9.3721 4.5001 8.0544 19 6 10.5558 4.8178 8.6687 20 1 11.4532 4.9415 8.0807 21 6 10.6011 4.9797 10.0480 22 7 9.5092 4.8287 10.7636 23 14 12.2138 5.4134 10.8851 24 1 13.2863 5.5270 9.8644 25 1 12.0691 6.7080 11.5979 26 1 12.5680 4.3492 11.8584 27 6 8.4504 5.2080 3.9799 28 6 7.8260 5.1596 2.5731 29 1 7.0402 5.9095 2.4819 30 6 8.9005 5.3826 1.5071 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 0.5139 0.8900 34 1 2.6607 2.7673 -1.4425 35 1 2.8829 1.0774 -1.9563 36 1 1.2569 1.8015 -1.9563 37 1 3.6647 3.2512 0.6179 38 1 5.1815 1.9479 2.6119 39 1 6.0105 1.7388 1.0508 40 1 6.0159 4.1973 0.7251 41 1 5.1868 4.4058 2.2864 42 1 6.1335 3.7265 4.3366 43 1 7.0448 2.2179 4.0043 44 1 7.2942 4.7764 6.2381 45 1 7.6585 3.0447 6.4306 46 1 8.5661 4.3886 8.5825 47 1 9.5408 4.9421 11.7264 48 1 7.9577 5.9739 4.5788 49 1 9.5170 5.4216 3.9088 50 1 8.4589 5.2703 0.5169 51 1 9.3114 6.3870 1.6099 52 1 9.6969 4.6494 1.6350 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102730398.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:24:04 Heat of formation + Delta-G solvation = -123.263373 kcal Electronic energy + Delta-G solvation = -29577.872422 eV Core-core repulsion = 25384.139151 eV Total energy + Delta-G solvation = -4193.733271 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.35873 -39.52366 -38.07830 -37.72931 -35.61956 -34.01894 -33.39324 -32.49523 -31.26674 -31.15338 -28.32718 -27.28889 -26.88642 -25.57311 -24.70161 -23.84166 -22.45905 -20.94995 -20.60149 -19.97440 -18.97368 -17.86037 -17.76914 -17.39352 -16.28995 -16.01516 -15.85110 -15.67420 -15.39428 -15.17197 -14.77754 -14.53363 -14.30824 -13.93877 -13.80472 -13.71060 -13.56100 -13.22747 -13.13590 -13.04995 -12.89923 -12.55111 -12.34667 -12.22804 -12.05213 -11.87646 -11.67041 -11.58802 -11.54960 -11.36063 -11.09817 -10.84579 -10.67296 -10.50228 -10.47739 -10.44047 -10.31712 -10.18774 -9.84207 -9.46704 -9.40383 -8.44409 -7.93696 -7.87410 -6.37992 -3.78512 2.28252 2.47265 3.18724 3.28873 3.36300 3.50648 3.95812 4.06515 4.20252 4.27965 4.35790 4.38985 4.47919 4.56299 4.73325 4.79160 4.88522 4.90775 4.95584 4.98948 5.14841 5.20344 5.21843 5.22329 5.28360 5.35598 5.40565 5.46752 5.53994 5.57238 5.64858 5.72840 5.78437 5.80878 5.85945 5.93543 6.03476 6.07439 6.13904 6.15415 6.33362 6.34665 6.52643 6.53238 7.11770 7.24398 7.29512 7.58917 7.88719 8.10818 8.66674 9.22604 9.59380 10.11771 10.80076 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018910 B = 0.001725 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.311101 B =16223.318219 C =17360.395399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.069 3.931 4 H 0.086 0.914 5 C -0.170 4.170 6 C 0.511 3.489 7 O -0.516 6.516 8 N -0.729 5.729 9 C 0.118 3.882 10 C -0.120 4.120 11 C -0.083 4.083 12 H 0.089 0.911 13 C 0.035 3.965 14 N -0.491 5.491 15 C 0.037 3.963 16 C 0.446 3.554 17 O -0.576 6.576 18 N -0.568 5.568 19 C -0.296 4.296 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.047 3.953 28 C -0.097 4.097 29 H 0.071 0.929 30 C -0.140 4.140 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.399 0.601 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.042 0.958 43 H 0.081 0.919 44 H 0.048 0.952 45 H 0.088 0.912 46 H 0.391 0.609 47 H 0.270 0.730 48 H 0.037 0.963 49 H 0.092 0.908 50 H 0.050 0.950 51 H 0.054 0.946 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.558 -0.922 -23.392 30.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.007 3.993 4 H 0.104 0.896 5 C -0.228 4.228 6 C 0.295 3.705 7 O -0.389 6.389 8 N -0.383 5.383 9 C -0.005 4.005 10 C -0.158 4.158 11 C -0.102 4.102 12 H 0.107 0.893 13 C -0.093 4.093 14 N -0.214 5.214 15 C -0.095 4.095 16 C 0.231 3.769 17 O -0.459 6.459 18 N -0.205 5.205 19 C -0.426 4.426 20 H 0.121 0.879 21 C -0.181 4.181 22 N -0.545 5.545 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.080 4.080 28 C -0.116 4.116 29 H 0.089 0.911 30 C -0.197 4.197 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.233 0.767 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.060 0.940 43 H 0.100 0.900 44 H 0.066 0.934 45 H 0.106 0.894 46 H 0.224 0.776 47 H 0.080 0.920 48 H 0.056 0.944 49 H 0.111 0.889 50 H 0.069 0.931 51 H 0.073 0.927 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.977 -2.113 -23.396 29.580 hybrid contribution -0.963 1.356 1.014 1.948 sum -18.940 -0.757 -22.382 29.330 Atomic orbital electron populations 1.22902 0.80471 1.03425 1.00046 1.88068 1.19765 1.25015 1.94918 1.21939 0.93531 0.87041 0.96757 0.89591 1.22230 1.03536 1.02007 0.95029 1.20389 0.86220 0.84176 0.79672 1.90756 1.69030 1.29704 1.49449 1.45965 1.22368 1.09259 1.60733 1.21470 0.83528 0.97768 0.97746 1.21815 0.96947 0.95625 1.01401 1.22074 0.95440 0.97269 0.95463 0.89266 1.23368 0.92211 1.00571 0.93152 1.64446 1.34003 1.20791 1.02179 1.22075 0.96935 1.01479 0.89031 1.19742 0.89810 0.84348 0.82976 1.90509 1.35785 1.55532 1.64118 1.41871 1.11677 1.61774 1.05170 1.19745 0.88898 1.43687 0.90276 0.87903 1.25250 0.98713 0.97683 0.96405 1.69621 1.27549 1.50238 1.07109 0.85809 0.81584 0.77891 0.79109 1.19240 1.20838 1.20782 1.22962 1.02628 0.89891 0.92556 1.22058 0.97689 0.96099 0.95763 0.91070 1.21810 0.98550 1.02053 0.97329 0.89016 0.93802 0.93737 0.90904 0.90947 0.91149 0.76694 0.90942 0.91085 0.90993 0.91198 0.93994 0.90044 0.93357 0.89416 0.77570 0.92004 0.94435 0.88936 0.93104 0.92664 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.25 16 2 O -0.36 -3.48 9.89 -55.09 -0.54 -4.02 16 3 C 0.07 0.49 3.13 -27.88 -0.09 0.40 16 4 H 0.09 0.38 7.79 -51.93 -0.40 -0.02 16 5 C -0.17 -0.81 9.48 37.16 0.35 -0.45 16 6 C 0.51 5.16 7.18 -10.99 -0.08 5.08 16 7 O -0.52 -7.89 16.51 -14.30 -0.24 -8.13 16 8 N -0.73 -5.20 5.52 -60.30 -0.33 -5.53 16 9 C 0.12 0.99 5.52 -4.04 -0.02 0.97 16 10 C -0.12 -0.84 4.71 -26.74 -0.13 -0.97 16 11 C -0.08 -0.84 2.63 -88.76 -0.23 -1.07 16 12 H 0.09 0.96 7.87 -51.92 -0.41 0.55 16 13 C 0.03 0.44 5.14 -1.90 -0.01 0.43 16 14 N -0.49 -8.25 4.91 -231.90 -1.14 -9.39 16 15 C 0.04 0.67 5.27 -4.98 -0.03 0.65 16 16 C 0.45 10.76 7.61 -10.99 -0.08 10.68 16 17 O -0.58 -15.85 14.86 5.54 0.08 -15.76 16 18 N -0.57 -14.66 5.29 -10.96 -0.06 -14.72 16 19 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 20 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 21 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.92 13.05 55.50 0.72 -24.19 16 23 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.05 0.74 5.52 -2.75 -0.02 0.73 16 28 C -0.10 -1.08 3.17 -89.26 -0.28 -1.36 16 29 H 0.07 0.69 7.85 -51.93 -0.41 0.28 16 30 C -0.14 -1.45 8.89 37.16 0.33 -1.12 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.04 0.16 7.87 -51.93 -0.41 -0.25 16 33 H 0.04 0.20 8.09 -51.93 -0.42 -0.22 16 34 H 0.07 0.20 7.93 -51.93 -0.41 -0.21 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.24 7.87 -51.93 -0.41 -0.16 16 37 H 0.40 1.53 8.26 -40.82 -0.34 1.19 16 38 H 0.07 0.72 7.43 -51.93 -0.39 0.34 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 42 H 0.04 0.49 7.90 -51.93 -0.41 0.08 16 43 H 0.08 1.01 8.05 -51.93 -0.42 0.60 16 44 H 0.05 0.81 7.73 -51.93 -0.40 0.41 16 45 H 0.09 1.48 8.08 -51.93 -0.42 1.06 16 46 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 47 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 48 H 0.04 0.60 7.52 -51.93 -0.39 0.20 16 49 H 0.09 1.71 7.07 -51.93 -0.37 1.34 16 50 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 52 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 420.91 15.07 6.34 6.34 Total: -1.00 -36.15 420.91 -8.83 -44.98 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -9.21 Total: 7.00 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 0.57 Total: 7.13 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.80 Total: -53.84 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.70 Total: -27.92 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -36.15 -8.83 -44.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102730398.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.286 kcal (2) G-P(sol) polarization free energy of solvation -36.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds