Wall clock time and date at job start Wed Apr 1 2020 01:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.50700 * 109.46955 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99785 * 0.02562 * 4 3 2 6 6 N 1.34772 * 119.99815 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00029 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.47332 * 325.00721 * 7 6 4 9 9 C 1.53005 * 109.46783 * 85.00268 * 7 6 4 10 10 C 1.50701 * 109.47480 * 205.00382 * 7 6 4 11 11 O 1.21284 * 119.99440 * 0.02562 * 10 7 6 12 12 N 1.34774 * 120.00034 * 180.02562 * 10 7 6 13 13 C 1.46504 * 119.99716 * 179.97438 * 12 10 7 14 14 C 1.52996 * 109.47001 * 179.97438 * 13 12 10 15 15 C 1.52994 * 109.47457 * 180.02562 * 14 13 12 16 16 H 1.09000 * 110.88516 * 54.29841 * 15 14 13 17 17 C 1.54911 * 111.00344 * 290.42083 * 15 14 13 18 18 N 1.47468 * 104.81140 * 204.94944 * 17 15 14 19 19 C 1.36936 * 125.62558 * 204.06960 * 18 17 15 20 20 H 1.08002 * 120.00461 * 359.97438 * 19 18 17 21 21 C 1.38816 * 119.99821 * 179.97438 * 19 18 17 22 22 N 1.31616 * 120.00061 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99896 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47068 * 60.00782 * 23 21 19 25 25 H 1.48505 * 109.46846 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47575 * 300.00203 * 23 21 19 27 27 C 1.47021 * 108.72480 * 24.06425 * 18 17 15 28 28 C 1.54328 * 107.26945 * 358.98007 * 27 18 17 29 29 H 1.09004 * 110.86919 * 96.23537 * 28 27 18 30 30 C 1.52994 * 110.71707 * 219.44142 * 28 27 18 31 31 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 32 32 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 33 33 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47036 * 300.00109 * 3 2 1 35 35 H 1.09002 * 109.46796 * 60.00253 * 3 2 1 36 36 H 0.96998 * 120.00297 * 0.02562 * 6 4 3 37 37 H 1.09000 * 109.46816 * 60.00137 * 9 7 6 38 38 H 1.09003 * 109.46800 * 179.97438 * 9 7 6 39 39 H 1.08992 * 109.47461 * 300.00244 * 9 7 6 40 40 H 0.96996 * 120.00459 * 359.97438 * 12 10 7 41 41 H 1.09000 * 109.47319 * 300.00200 * 13 12 10 42 42 H 1.08998 * 109.46798 * 59.99999 * 13 12 10 43 43 H 1.09000 * 109.47274 * 300.00260 * 14 13 12 44 44 H 1.09003 * 109.47276 * 59.99613 * 14 13 12 45 45 H 1.09007 * 110.36676 * 323.75148 * 17 15 14 46 46 H 1.09000 * 110.36946 * 86.07108 * 17 15 14 47 47 H 0.97001 * 120.00182 * 179.97438 * 22 21 19 48 48 H 1.08993 * 109.88267 * 239.56135 * 27 18 17 49 49 H 1.09002 * 109.87713 * 118.39400 * 27 18 17 50 50 H 1.09006 * 109.46992 * 173.52166 * 30 28 27 51 51 H 1.08998 * 109.47144 * 293.52049 * 30 28 27 52 52 H 1.08996 * 109.47449 * 53.52410 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0341 0.0914 0.0006 6 7 4.2765 2.2967 0.0002 7 6 5.7370 2.1810 0.0014 8 1 6.0323 1.3136 0.5917 9 6 6.2365 2.0142 -1.4352 10 6 6.3391 3.4254 0.6013 11 8 5.6190 4.3206 0.9900 12 7 7.6776 3.5435 0.7058 13 6 8.2628 4.7536 1.2885 14 6 9.7880 4.6327 1.2898 15 6 10.3993 5.8960 1.8988 16 1 9.9819 6.0925 2.8864 17 6 10.2052 7.1142 0.9617 18 7 11.2968 8.0402 1.3160 19 6 11.2895 9.3950 1.1175 20 1 10.4315 9.8700 0.6651 21 6 12.3850 10.1581 1.4976 22 7 13.4309 9.5794 2.0484 23 14 12.3754 12.0063 1.2261 24 1 11.2417 12.6102 1.9713 25 1 13.6531 12.5849 1.7138 26 1 12.2240 12.2930 -0.2230 27 6 12.3939 7.2682 1.9177 28 6 11.9462 5.7919 1.9595 29 1 12.3299 5.2452 1.0981 30 6 12.3933 5.1275 3.2631 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6887 1.8463 -0.8899 35 1 1.6887 1.8463 0.8900 36 1 3.8595 3.1724 -0.0001 37 1 5.9411 2.8816 -2.0255 38 1 7.3231 1.9285 -1.4343 39 1 5.8010 1.1141 -1.8691 40 1 8.2534 2.8274 0.3952 41 1 7.9672 5.6208 0.6980 42 1 7.9072 4.8726 2.3119 43 1 10.0832 3.7655 1.8805 44 1 10.1440 4.5133 0.2664 45 1 10.2912 6.8082 -0.0810 46 1 9.2370 7.5812 1.1422 47 1 14.1966 10.1125 2.3137 48 1 12.5875 7.6257 2.9290 49 1 13.2930 7.3658 1.3092 50 1 11.9702 4.1246 3.3235 51 1 13.4812 5.0647 3.2844 52 1 12.0468 5.7195 4.1102 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103020305.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:23:54 Heat of formation + Delta-G solvation = -103.260978 kcal Electronic energy + Delta-G solvation = -29526.308621 eV Core-core repulsion = 25333.442720 eV Total energy + Delta-G solvation = -4192.865902 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.74024 -39.60024 -38.22680 -37.82983 -35.56920 -35.18665 -33.31570 -32.01221 -30.86250 -30.59988 -28.92570 -26.98817 -26.37190 -25.72016 -24.78900 -23.74745 -22.06329 -21.11310 -20.62325 -19.79747 -19.24170 -18.39947 -17.46937 -16.85596 -16.75410 -16.52248 -16.31279 -15.93355 -15.44781 -15.17942 -14.89901 -14.71158 -14.37376 -14.09499 -13.91850 -13.59870 -13.53118 -13.14833 -13.06199 -12.80242 -12.63588 -12.55573 -12.33348 -12.00957 -11.96668 -11.93594 -11.71454 -11.41163 -11.22739 -11.08923 -10.78485 -10.74641 -10.30565 -10.25437 -10.20519 -10.06366 -9.90074 -9.85693 -9.66836 -9.58810 -9.47163 -9.25025 -8.57730 -6.79891 -5.68748 -3.01864 2.14603 2.21734 2.32301 2.98127 3.41731 3.45924 3.47095 3.59599 4.20681 4.35921 4.51783 4.57530 4.61872 4.67597 4.73990 4.84310 4.84778 4.88832 5.06008 5.15855 5.19646 5.24402 5.34885 5.45902 5.48762 5.59412 5.65746 5.70647 5.72557 5.87895 5.90039 5.96081 6.06701 6.19290 6.22899 6.26143 6.34408 6.45656 6.51010 6.63333 6.65482 6.79188 7.00565 7.05585 7.19713 7.59241 7.66919 7.78272 7.86124 7.88507 8.29093 9.25082 9.85547 10.52014 11.42762 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021438 B = 0.001680 C = 0.001600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.803118 B =16658.937031 C =17500.376267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.518 3.482 5 O -0.520 6.520 6 N -0.712 5.712 7 C 0.127 3.873 8 H 0.116 0.884 9 C -0.160 4.160 10 C 0.509 3.491 11 O -0.536 6.536 12 N -0.720 5.720 13 C 0.117 3.883 14 C -0.117 4.117 15 C -0.095 4.095 16 H 0.076 0.924 17 C 0.140 3.860 18 N -0.607 5.607 19 C -0.228 4.228 20 H 0.076 0.924 21 C -0.009 4.009 22 N -0.922 5.922 23 Si 0.911 3.089 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.286 1.286 27 C 0.184 3.816 28 C -0.114 4.114 29 H 0.064 0.936 30 C -0.133 4.133 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.411 0.589 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.402 0.598 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.017 0.983 46 H 0.037 0.963 47 H 0.252 0.748 48 H 0.047 0.953 49 H 0.039 0.961 50 H 0.043 0.957 51 H 0.051 0.949 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.175 -19.170 -4.352 27.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.036 4.036 4 C 0.303 3.697 5 O -0.394 6.394 6 N -0.368 5.368 7 C 0.018 3.982 8 H 0.133 0.867 9 C -0.219 4.219 10 C 0.294 3.706 11 O -0.413 6.413 12 N -0.372 5.372 13 C -0.005 4.005 14 C -0.155 4.155 15 C -0.115 4.115 16 H 0.095 0.905 17 C 0.013 3.987 18 N -0.333 5.333 19 C -0.357 4.357 20 H 0.094 0.906 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.742 3.258 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.059 3.941 28 C -0.134 4.134 29 H 0.082 0.918 30 C -0.191 4.191 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.248 0.752 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.236 0.764 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.034 0.966 46 H 0.055 0.945 47 H 0.062 0.938 48 H 0.065 0.935 49 H 0.057 0.943 50 H 0.062 0.938 51 H 0.070 0.930 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.048 -19.282 -4.018 27.400 hybrid contribution -0.028 1.424 -0.259 1.448 sum -19.075 -17.857 -4.278 26.478 Atomic orbital electron populations 1.22860 0.80125 1.03439 1.00276 1.88009 1.19976 1.25060 1.95471 1.22201 0.91171 0.87161 1.03069 1.20245 0.88818 0.84277 0.76314 1.90741 1.74533 1.26380 1.47747 1.45613 1.05455 1.09811 1.75958 1.20765 0.81199 0.97467 0.98735 0.86672 1.22149 1.01961 1.03590 0.94204 1.20501 0.82934 0.88307 0.78898 1.90722 1.60345 1.41366 1.48893 1.46008 1.06278 1.21721 1.63181 1.21555 0.93508 0.86474 0.98993 1.21750 0.92713 0.99158 1.01863 1.22330 0.95877 0.93703 0.99634 0.90543 1.21621 0.92419 0.89681 0.94946 1.44468 1.14346 1.02797 1.71663 1.19025 1.01154 0.81163 1.34319 0.90572 1.24791 0.96489 0.98093 1.01105 1.69955 1.06382 1.33803 1.46862 0.86212 0.76761 0.85094 0.77774 1.21202 1.21611 1.21234 1.21205 0.90446 0.84060 0.98393 1.22484 0.94134 0.99707 0.97041 0.91776 1.21680 1.00748 0.99069 0.97582 0.93656 0.93697 0.88981 0.89928 0.89850 0.75168 0.91520 0.90679 0.90662 0.76352 0.90714 0.91269 0.91541 0.91231 0.96570 0.94515 0.93777 0.93459 0.94263 0.93836 0.92990 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.37 -3.40 10.24 -55.14 -0.56 -3.96 16 3 C 0.04 0.30 6.42 36.01 0.23 0.53 16 4 C 0.52 5.03 7.87 -10.99 -0.09 4.95 16 5 O -0.52 -7.10 16.16 -14.35 -0.23 -7.33 16 6 N -0.71 -5.96 4.95 -54.93 -0.27 -6.23 16 7 C 0.13 1.07 2.98 -69.08 -0.21 0.86 16 8 H 0.12 0.99 7.58 -51.93 -0.39 0.60 16 9 C -0.16 -1.10 9.38 37.16 0.35 -0.75 16 10 C 0.51 5.30 7.22 -10.99 -0.08 5.22 16 11 O -0.54 -7.45 15.84 5.55 0.09 -7.36 16 12 N -0.72 -6.58 5.45 -60.29 -0.33 -6.91 16 13 C 0.12 1.35 5.55 -4.04 -0.02 1.33 16 14 C -0.12 -1.35 4.84 -26.74 -0.13 -1.48 16 15 C -0.10 -1.53 2.48 -88.47 -0.22 -1.75 16 16 H 0.08 1.27 8.05 -51.93 -0.42 0.85 16 17 C 0.14 2.80 6.04 -2.50 -0.02 2.78 16 18 N -0.61 -15.43 3.40 -170.03 -0.58 -16.00 16 19 C -0.23 -6.40 10.28 -15.06 -0.15 -6.56 16 20 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 21 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 22 N -0.92 -27.14 10.31 55.49 0.57 -26.57 16 23 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 C 0.18 4.39 4.97 -3.06 -0.02 4.37 16 28 C -0.11 -2.01 3.02 -88.79 -0.27 -2.28 16 29 H 0.06 1.07 8.04 -51.93 -0.42 0.66 16 30 C -0.13 -2.01 9.16 37.15 0.34 -1.67 16 31 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.41 3.02 7.79 -40.82 -0.32 2.70 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.39 7.56 -51.93 -0.39 0.00 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.40 2.56 7.89 -40.82 -0.32 2.24 16 41 H 0.07 0.99 7.60 -51.93 -0.39 0.59 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.78 8.04 -51.93 -0.42 0.36 16 45 H 0.02 0.33 7.96 -51.93 -0.41 -0.09 16 46 H 0.04 0.73 8.10 -51.93 -0.42 0.31 16 47 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 48 H 0.05 1.26 7.01 -51.93 -0.36 0.89 16 49 H 0.04 1.05 7.50 -51.93 -0.39 0.66 16 50 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 52 H 0.05 0.86 8.06 -51.93 -0.42 0.44 16 LS Contribution 420.79 15.07 6.34 6.34 Total: -1.00 -36.00 420.79 -8.53 -44.53 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -9.28 Total: -0.18 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 0.74 Total: 6.47 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.61 Total: -55.71 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.71 Total: -18.65 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -36.00 -8.53 -44.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103020305.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.727 kcal (2) G-P(sol) polarization free energy of solvation -36.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds