Wall clock time and date at job start Wed Apr 1 2020 01:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00022 * 2 1 4 4 C 1.50696 * 109.46914 * 180.02562 * 3 2 1 5 5 O 1.21276 * 120.00544 * 359.97438 * 4 3 2 6 6 N 1.34783 * 120.00029 * 180.02562 * 4 3 2 7 7 C 1.46491 * 120.00350 * 179.97438 * 6 4 3 8 8 H 1.09004 * 109.47210 * 34.99790 * 7 6 4 9 9 C 1.53001 * 109.47086 * 275.00096 * 7 6 4 10 10 C 1.50700 * 109.47349 * 155.00181 * 7 6 4 11 11 O 1.21279 * 119.99595 * 0.02562 * 10 7 6 12 12 N 1.34776 * 119.99911 * 180.02562 * 10 7 6 13 13 C 1.46502 * 119.99595 * 180.02562 * 12 10 7 14 14 C 1.52998 * 109.46927 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.47329 * 179.97438 * 14 13 12 16 16 H 1.09000 * 110.63496 * 51.85607 * 15 14 13 17 17 C 1.54335 * 111.00070 * 288.78062 * 15 14 13 18 18 N 1.47022 * 107.26195 * 219.59791 * 17 15 14 19 19 C 1.36935 * 125.64427 * 178.84992 * 18 17 15 20 20 H 1.08000 * 120.00518 * 359.44761 * 19 18 17 21 21 C 1.38817 * 119.99990 * 179.71412 * 19 18 17 22 22 N 1.31617 * 119.99869 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99909 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46676 * 90.00727 * 23 21 19 25 25 H 1.48502 * 109.46977 * 210.00025 * 23 21 19 26 26 H 1.48494 * 109.47494 * 330.00753 * 23 21 19 27 27 C 1.47426 * 108.70625 * 358.58545 * 18 17 15 28 28 C 1.54912 * 104.82994 * 24.35934 * 27 18 17 29 29 H 1.09002 * 111.00798 * 81.09539 * 28 27 18 30 30 C 1.52999 * 111.00381 * 204.91502 * 28 27 18 31 31 H 1.08999 * 109.47384 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.46732 * 299.99841 * 1 2 3 33 33 H 1.09002 * 109.47318 * 59.99230 * 1 2 3 34 34 H 1.09003 * 109.46786 * 60.00134 * 3 2 1 35 35 H 1.09005 * 109.47032 * 300.00573 * 3 2 1 36 36 H 0.97000 * 119.99393 * 0.02562 * 6 4 3 37 37 H 1.08996 * 109.47097 * 299.99968 * 9 7 6 38 38 H 1.09000 * 109.47090 * 60.00283 * 9 7 6 39 39 H 1.09003 * 109.47469 * 179.97438 * 9 7 6 40 40 H 0.96996 * 120.00291 * 359.97438 * 12 10 7 41 41 H 1.08996 * 109.47340 * 59.99883 * 13 12 10 42 42 H 1.09001 * 109.46732 * 299.99547 * 13 12 10 43 43 H 1.09009 * 109.47376 * 59.99980 * 14 13 12 44 44 H 1.09003 * 109.47168 * 299.99799 * 14 13 12 45 45 H 1.09007 * 109.99076 * 100.12594 * 17 15 14 46 46 H 1.09002 * 109.78210 * 338.95588 * 17 15 14 47 47 H 0.96996 * 119.99743 * 179.97438 * 22 21 19 48 48 H 1.08998 * 110.36404 * 143.19245 * 27 18 17 49 49 H 1.08995 * 110.36566 * 265.51629 * 27 18 17 50 50 H 1.09005 * 109.46589 * 58.54331 * 30 28 27 51 51 H 1.08990 * 109.47291 * 178.54164 * 30 28 27 52 52 H 1.09000 * 109.47086 * 298.54970 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 8 4.0341 0.0916 -0.0006 6 7 4.2765 2.2968 -0.0002 7 6 5.7369 2.1812 -0.0003 8 1 6.0326 1.3135 -0.5900 9 6 6.2353 2.0150 1.4367 10 6 6.3393 3.4254 -0.6002 11 8 5.6196 4.3208 -0.9890 12 7 7.6779 3.5431 -0.7047 13 6 8.2635 4.7529 -1.2874 14 6 9.7887 4.6315 -1.2888 15 6 10.4004 5.8947 -1.8979 16 1 10.0044 6.7862 -1.4117 17 6 10.1499 5.9521 -3.4197 18 7 11.3759 6.4698 -4.0445 19 6 11.5717 6.6515 -5.3875 20 1 10.7884 6.3985 -6.0866 21 6 12.7793 7.1557 -5.8509 22 7 13.7361 7.4586 -4.9994 23 14 13.0466 7.4029 -7.6831 24 1 12.6131 8.7706 -8.0664 25 1 14.4874 7.2332 -8.0004 26 1 12.2520 6.4017 -8.4389 27 6 12.3573 6.7668 -2.9852 28 6 11.9484 5.8574 -1.7996 29 1 12.3248 4.8437 -1.9367 30 6 12.4276 6.4420 -0.4694 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8901 33 1 -0.3634 0.5140 -0.8899 34 1 1.6886 1.8464 0.8900 35 1 1.6885 1.8465 -0.8900 36 1 3.8593 3.1725 0.0009 37 1 5.9396 2.8826 2.0264 38 1 5.7997 1.1150 1.8706 39 1 7.3219 1.9285 1.4367 40 1 8.2535 2.8271 -0.3934 41 1 7.9682 5.6202 -0.6970 42 1 7.9080 4.8719 -2.3110 43 1 10.0837 3.7642 -1.8795 44 1 10.1446 4.5122 -0.2654 45 1 9.3143 6.6183 -3.6350 46 1 9.9357 4.9519 -3.7963 47 1 14.5799 7.8105 -5.3233 48 1 13.3646 6.5214 -3.3216 49 1 12.2979 7.8162 -2.6965 50 1 12.0036 7.4374 -0.3362 51 1 12.1050 5.7974 0.3481 52 1 13.5156 6.5080 -0.4725 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103020306.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:23:58 Heat of formation + Delta-G solvation = -102.313350 kcal Electronic energy + Delta-G solvation = -29531.444776 eV Core-core repulsion = 25338.619967 eV Total energy + Delta-G solvation = -4192.824809 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.73883 -39.59840 -38.22176 -37.82392 -35.56464 -35.18655 -33.33935 -32.00463 -30.86147 -30.61371 -28.92329 -27.00381 -26.36850 -25.72633 -24.78717 -23.75740 -22.06718 -21.10852 -20.61792 -19.73288 -19.25808 -18.39173 -17.46096 -16.86510 -16.74907 -16.53737 -16.30539 -15.92830 -15.56459 -15.12681 -14.85508 -14.75223 -14.47969 -14.08781 -13.74024 -13.66450 -13.50807 -13.14935 -12.97429 -12.85586 -12.77495 -12.61842 -12.13873 -12.06996 -11.97771 -11.94078 -11.68485 -11.51021 -11.14228 -11.05008 -10.85067 -10.75956 -10.29982 -10.25751 -10.21332 -10.08749 -9.90313 -9.83713 -9.72424 -9.57561 -9.32666 -9.25193 -8.63519 -6.80575 -5.63692 -3.05040 2.14770 2.22626 2.32316 2.98303 3.40705 3.45768 3.47580 3.60026 4.20827 4.36036 4.50273 4.56830 4.62254 4.67587 4.74249 4.84702 4.86774 4.89447 5.05590 5.14127 5.20387 5.25159 5.33605 5.44869 5.50901 5.54383 5.63849 5.68479 5.73674 5.88503 5.90588 5.95209 6.10194 6.20130 6.24814 6.27106 6.32523 6.46337 6.55215 6.61213 6.68541 6.82532 7.01300 7.05831 7.19916 7.56323 7.65344 7.78932 7.88196 7.88474 8.38518 9.24374 9.85349 10.50644 11.39982 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018063 B = 0.001731 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.754122 B =16173.481969 C =17310.888343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.518 3.482 5 O -0.519 6.519 6 N -0.712 5.712 7 C 0.126 3.874 8 H 0.116 0.884 9 C -0.160 4.160 10 C 0.509 3.491 11 O -0.537 6.537 12 N -0.720 5.720 13 C 0.117 3.883 14 C -0.117 4.117 15 C -0.092 4.092 16 H 0.072 0.928 17 C 0.139 3.861 18 N -0.605 5.605 19 C -0.221 4.221 20 H 0.076 0.924 21 C -0.012 4.012 22 N -0.922 5.922 23 Si 0.913 3.087 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.159 3.841 28 C -0.115 4.115 29 H 0.068 0.932 30 C -0.133 4.133 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.411 0.589 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.402 0.598 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.019 0.981 46 H 0.022 0.978 47 H 0.251 0.749 48 H 0.105 0.895 49 H 0.011 0.989 50 H 0.050 0.950 51 H 0.042 0.958 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.768 -11.044 16.621 28.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.036 4.036 4 C 0.303 3.697 5 O -0.393 6.393 6 N -0.369 5.369 7 C 0.018 3.982 8 H 0.134 0.866 9 C -0.218 4.218 10 C 0.294 3.706 11 O -0.414 6.414 12 N -0.372 5.372 13 C -0.005 4.005 14 C -0.155 4.155 15 C -0.112 4.112 16 H 0.091 0.909 17 C 0.013 3.987 18 N -0.331 5.331 19 C -0.350 4.350 20 H 0.094 0.906 21 C -0.208 4.208 22 N -0.571 5.571 23 Si 0.744 3.256 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.034 3.966 28 C -0.135 4.135 29 H 0.086 0.914 30 C -0.191 4.191 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.248 0.752 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.237 0.763 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.037 0.963 46 H 0.040 0.960 47 H 0.062 0.938 48 H 0.122 0.878 49 H 0.029 0.971 50 H 0.069 0.931 51 H 0.061 0.939 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.639 -11.288 16.157 27.824 hybrid contribution -0.040 0.635 -0.853 1.064 sum -19.679 -10.654 15.304 27.110 Atomic orbital electron populations 1.22860 0.80129 1.03450 1.00259 1.88011 1.19974 1.25045 1.95465 1.22200 0.91166 0.87173 1.03045 1.20249 0.88821 0.84283 0.76327 1.90743 1.74510 1.26387 1.47662 1.45606 1.05437 1.09789 1.76020 1.20767 0.81207 0.97553 0.98695 0.86596 1.22143 1.01950 1.03521 0.94215 1.20498 0.82922 0.88297 0.78880 1.90715 1.60369 1.41404 1.48920 1.46007 1.06285 1.21767 1.63099 1.21563 0.93604 0.86171 0.99199 1.21797 0.92576 0.99649 1.01457 1.22147 0.96425 0.96050 0.96570 0.90950 1.21373 0.90610 0.96462 0.90215 1.44498 1.10721 1.75360 1.02512 1.19091 0.98850 1.35770 0.81269 0.90569 1.24780 0.96459 1.01549 0.97965 1.69802 1.05505 1.50204 1.31609 0.86084 0.77061 0.77909 0.84529 1.21670 1.21663 1.20733 1.21965 0.96913 0.93631 0.84116 1.22634 0.93497 1.00706 0.96619 0.91359 1.21632 1.01007 1.00130 0.96308 0.88973 0.93717 0.93649 0.89965 0.89832 0.75215 0.91616 0.90658 0.90700 0.76314 0.91287 0.90811 0.91100 0.91486 0.96323 0.96016 0.93798 0.87768 0.97093 0.93099 0.93870 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.27 16 2 O -0.37 -3.45 10.24 -55.14 -0.56 -4.02 16 3 C 0.04 0.31 6.42 36.00 0.23 0.54 16 4 C 0.52 5.11 7.87 -10.98 -0.09 5.02 16 5 O -0.52 -7.21 16.16 -14.35 -0.23 -7.45 16 6 N -0.71 -6.00 4.95 -54.94 -0.27 -6.28 16 7 C 0.13 1.08 2.98 -69.09 -0.21 0.87 16 8 H 0.12 1.05 7.58 -51.93 -0.39 0.65 16 9 C -0.16 -1.06 9.38 37.16 0.35 -0.71 16 10 C 0.51 5.36 7.22 -10.99 -0.08 5.28 16 11 O -0.54 -7.47 15.84 5.56 0.09 -7.38 16 12 N -0.72 -6.72 5.45 -60.30 -0.33 -7.05 16 13 C 0.12 1.36 5.56 -4.04 -0.02 1.34 16 14 C -0.12 -1.39 4.74 -26.73 -0.13 -1.52 16 15 C -0.09 -1.49 2.38 -88.77 -0.21 -1.70 16 16 H 0.07 1.15 8.01 -51.93 -0.42 0.73 16 17 C 0.14 2.86 6.25 -3.06 -0.02 2.84 16 18 N -0.61 -15.50 3.39 -170.06 -0.58 -16.07 16 19 C -0.22 -6.22 10.27 -15.06 -0.15 -6.38 16 20 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 21 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 22 N -0.92 -26.90 10.09 55.49 0.56 -26.34 16 23 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 27 C 0.16 3.79 5.36 -2.53 -0.01 3.77 16 28 C -0.11 -2.05 3.09 -88.47 -0.27 -2.32 16 29 H 0.07 1.23 8.05 -51.93 -0.42 0.81 16 30 C -0.13 -1.97 9.29 37.16 0.35 -1.62 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.04 0.16 8.14 -51.92 -0.42 -0.26 16 33 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.41 2.99 7.79 -40.82 -0.32 2.67 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.37 7.57 -51.93 -0.39 -0.02 16 40 H 0.40 2.67 7.89 -40.82 -0.32 2.35 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 1.01 7.69 -51.93 -0.40 0.61 16 43 H 0.07 0.87 7.95 -51.92 -0.41 0.45 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 46 H 0.02 0.44 7.70 -51.93 -0.40 0.04 16 47 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 48 H 0.10 2.83 5.87 -51.93 -0.31 2.52 16 49 H 0.01 0.28 8.04 -51.93 -0.42 -0.13 16 50 H 0.05 0.75 8.11 -51.93 -0.42 0.33 16 51 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 52 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 420.40 15.07 6.34 6.34 Total: -1.00 -35.80 420.40 -8.50 -44.30 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -9.23 Total: 0.50 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 0.75 Total: 6.24 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.62 Total: -55.73 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.71 Total: -18.84 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -35.80 -8.50 -44.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103020306.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.010 kcal (2) G-P(sol) polarization free energy of solvation -35.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds