Wall clock time and date at job start Wed Apr 1 2020 01:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.50701 * 109.46878 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99781 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99795 * 179.97438 * 4 3 2 7 7 C 1.46490 * 120.00111 * 0.02562 * 6 4 3 8 8 C 1.46497 * 119.99566 * 180.02562 * 6 4 3 9 9 C 1.50707 * 109.47162 * 90.00410 * 8 6 4 10 10 O 1.21278 * 119.99600 * 359.97438 * 9 8 6 11 11 N 1.34769 * 120.00129 * 179.97438 * 9 8 6 12 12 C 1.46502 * 120.00201 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47219 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.46963 * 180.02562 * 13 12 11 15 15 H 1.09004 * 110.88950 * 51.11837 * 14 13 12 16 16 C 1.54913 * 111.00501 * 287.19218 * 14 13 12 17 17 N 1.47424 * 104.83599 * 204.91401 * 16 14 13 18 18 C 1.36929 * 125.65126 * 204.07895 * 17 16 14 19 19 H 1.08001 * 119.99917 * 0.04094 * 18 17 16 20 20 C 1.38809 * 120.00138 * 180.02562 * 18 17 16 21 21 N 1.31624 * 120.00124 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 120.00079 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47114 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47119 * 120.00203 * 22 20 18 25 25 H 1.48504 * 109.46728 * 239.99865 * 22 20 18 26 26 C 1.47024 * 108.69831 * 24.13403 * 17 16 14 27 27 C 1.54320 * 107.27415 * 358.93444 * 26 17 16 28 28 H 1.09000 * 110.72108 * 96.17186 * 27 26 17 29 29 C 1.53005 * 110.87337 * 219.37414 * 27 26 17 30 30 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 32 32 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 33 33 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 34 34 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 35 35 H 1.08995 * 109.47620 * 89.99771 * 7 6 4 36 36 H 1.09006 * 109.47028 * 209.99878 * 7 6 4 37 37 H 1.09002 * 109.47109 * 329.99455 * 7 6 4 38 38 H 1.09000 * 109.47018 * 209.99971 * 8 6 4 39 39 H 1.09000 * 109.47828 * 330.00266 * 8 6 4 40 40 H 0.97002 * 120.00259 * 359.97438 * 11 9 8 41 41 H 1.08998 * 109.47108 * 300.00703 * 12 11 9 42 42 H 1.09002 * 109.46824 * 60.00264 * 12 11 9 43 43 H 1.09000 * 109.47241 * 299.99833 * 13 12 11 44 44 H 1.09000 * 109.47620 * 60.00138 * 13 12 11 45 45 H 1.08995 * 110.36608 * 323.76273 * 16 14 13 46 46 H 1.09009 * 110.36174 * 86.08000 * 16 14 13 47 47 H 0.96997 * 119.99834 * 179.97438 * 21 20 18 48 48 H 1.09001 * 109.88111 * 239.51734 * 26 17 16 49 49 H 1.09003 * 109.88113 * 118.35718 * 26 17 16 50 50 H 1.09003 * 109.46709 * 173.61136 * 29 27 26 51 51 H 1.08998 * 109.46708 * 293.60921 * 29 27 26 52 52 H 1.08992 * 109.46789 * 53.61323 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 8 4.0340 0.0916 0.0006 6 7 4.2763 2.2970 0.0002 7 6 3.6463 3.6195 -0.0003 8 6 5.7367 2.1813 0.0003 9 6 6.2375 2.1412 -1.4206 10 8 5.4518 2.2027 -2.3424 11 7 7.5584 2.0370 -1.6668 12 6 8.0453 1.9974 -3.0480 13 6 9.5705 1.8767 -3.0480 14 6 10.0788 1.8361 -4.4904 15 1 9.6697 2.6635 -5.0702 16 6 9.7526 0.4758 -5.1560 17 7 10.7627 0.3238 -6.2191 18 6 10.6273 -0.4439 -7.3448 19 1 9.7186 -1.0037 -7.5106 20 6 11.6577 -0.5026 -8.2730 21 7 12.7652 0.1794 -8.0708 22 14 11.4727 -1.5494 -9.8091 23 1 10.1437 -2.2120 -9.7995 24 1 11.5878 -0.6871 -11.0126 25 1 12.5398 -2.5818 -9.8360 26 6 11.9400 1.1321 -5.8696 27 6 11.6298 1.8399 -4.5339 28 1 12.0404 1.2779 -3.6951 29 6 12.1677 3.2723 -4.5382 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6885 1.8465 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.4900 3.9479 1.0272 36 1 4.2936 4.3301 -0.5144 37 1 2.6866 3.5645 -0.5142 38 1 6.1692 3.0400 0.5138 39 1 6.0288 1.2656 0.5144 40 1 8.1869 1.9882 -0.9295 41 1 7.6131 1.1383 -3.5611 42 1 7.7529 2.9128 -3.5626 43 1 10.0029 2.7356 -2.5348 44 1 9.8625 0.9612 -2.5335 45 1 9.8410 -0.3326 -4.4303 46 1 8.7505 0.4939 -5.5848 47 1 13.4853 0.1381 -8.7193 48 1 12.1252 1.8729 -6.6474 49 1 12.8112 0.4873 -5.7540 50 1 11.8394 3.7863 -3.6348 51 1 13.2570 3.2512 -4.5688 52 1 11.7897 3.7996 -5.4140 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103053164.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:24:08 Heat of formation + Delta-G solvation = -89.394579 kcal Electronic energy + Delta-G solvation = -29804.895747 eV Core-core repulsion = 25612.631138 eV Total energy + Delta-G solvation = -4192.264609 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.63691 -39.37673 -38.15447 -37.73467 -35.85258 -35.13752 -33.22443 -31.47911 -30.65755 -30.25829 -28.47973 -27.06609 -26.63961 -25.79139 -25.36204 -23.91174 -22.02444 -21.06629 -19.95801 -19.55993 -19.18793 -17.81305 -17.57173 -17.13839 -16.79125 -16.56127 -16.20408 -15.71571 -15.46138 -15.01322 -14.92794 -14.69095 -14.28947 -13.94338 -13.78576 -13.58595 -13.38372 -13.30951 -13.00870 -12.93066 -12.61815 -12.59295 -12.42843 -12.10406 -11.87413 -11.83529 -11.67724 -11.34225 -11.19357 -11.04419 -10.75071 -10.71794 -10.31291 -10.21543 -10.10521 -9.99861 -9.85045 -9.81233 -9.61800 -9.48709 -9.10711 -9.04509 -8.54753 -6.75728 -5.65348 -2.98087 2.10939 2.32880 2.51048 3.14390 3.43860 3.49643 3.50314 3.52145 4.15873 4.51096 4.55181 4.58520 4.61944 4.70011 4.74258 4.88735 4.92128 4.94327 4.96571 5.07385 5.13012 5.21906 5.27294 5.31044 5.50242 5.53379 5.63640 5.71311 5.77302 5.84984 5.96294 6.02588 6.12028 6.25126 6.27636 6.37397 6.41111 6.52450 6.55221 6.67074 6.70853 6.83656 6.88397 7.05773 7.37045 7.63956 7.70439 7.80372 7.89942 8.10908 8.32668 9.29014 9.89328 10.55880 11.46410 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014374 B = 0.001936 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.552242 B =14462.012072 C =16007.658134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.048 3.952 4 C 0.520 3.480 5 O -0.512 6.512 6 N -0.601 5.601 7 C 0.079 3.921 8 C 0.098 3.902 9 C 0.493 3.507 10 O -0.531 6.531 11 N -0.727 5.727 12 C 0.119 3.881 13 C -0.116 4.116 14 C -0.095 4.095 15 H 0.076 0.924 16 C 0.139 3.861 17 N -0.607 5.607 18 C -0.224 4.224 19 H 0.078 0.922 20 C -0.011 4.011 21 N -0.923 5.923 22 Si 0.911 3.089 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.184 3.816 27 C -0.115 4.115 28 H 0.064 0.936 29 C -0.132 4.132 30 H 0.092 0.908 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.400 0.600 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.017 0.983 46 H 0.037 0.963 47 H 0.250 0.750 48 H 0.047 0.953 49 H 0.039 0.961 50 H 0.042 0.958 51 H 0.051 0.949 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.275 11.370 23.093 31.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.032 4.032 4 C 0.307 3.693 5 O -0.385 6.385 6 N -0.337 5.337 7 C -0.063 4.063 8 C -0.029 4.029 9 C 0.277 3.723 10 O -0.407 6.407 11 N -0.380 5.380 12 C -0.004 4.004 13 C -0.154 4.154 14 C -0.115 4.115 15 H 0.094 0.906 16 C 0.013 3.987 17 N -0.333 5.333 18 C -0.352 4.352 19 H 0.095 0.905 20 C -0.207 4.207 21 N -0.571 5.571 22 Si 0.742 3.258 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.059 3.941 27 C -0.134 4.134 28 H 0.082 0.918 29 C -0.190 4.190 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.128 0.872 39 H 0.133 0.867 40 H 0.233 0.767 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.035 0.965 46 H 0.055 0.945 47 H 0.061 0.939 48 H 0.065 0.935 49 H 0.057 0.943 50 H 0.061 0.939 51 H 0.070 0.930 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.366 10.568 22.208 30.695 hybrid contribution 0.138 -0.193 -0.611 0.656 sum -18.228 10.375 21.596 30.105 Atomic orbital electron populations 1.22852 0.80196 1.03488 1.00117 1.88030 1.19923 1.25116 1.95405 1.22240 0.91314 0.87099 1.02561 1.20255 0.88876 0.84012 0.76139 1.90751 1.74390 1.26135 1.47232 1.47278 1.05161 1.06710 1.74519 1.21866 0.99197 0.83521 1.01764 1.21312 0.81045 1.05797 0.94709 1.21123 0.82611 0.76593 0.91983 1.90719 1.55189 1.48737 1.46073 1.46046 1.07156 1.75087 1.09691 1.21486 0.94657 1.02594 0.81659 1.21743 0.93059 1.02208 0.98382 1.22327 0.96169 0.99510 0.93503 0.90589 1.21625 0.93246 0.92988 0.90867 1.44485 1.13821 1.54221 1.20795 1.19128 1.00660 1.19843 0.95616 0.90450 1.24800 0.96428 1.00480 0.99000 1.69982 1.06024 1.44996 1.36101 0.86050 0.77269 0.79535 0.82992 1.20512 1.21814 1.21822 1.21199 0.89688 0.93236 0.89991 1.22484 0.93965 0.96200 1.00748 0.91799 1.21671 1.00593 0.96176 1.00563 0.88958 0.93816 0.93675 0.90195 0.89909 0.92006 0.90510 0.90825 0.87197 0.86677 0.76666 0.91044 0.91539 0.91635 0.91272 0.96491 0.94501 0.93924 0.93473 0.94263 0.93859 0.93009 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.37 -4.03 10.24 -55.14 -0.56 -4.59 16 3 C 0.05 0.40 4.97 36.01 0.18 0.58 16 4 C 0.52 6.09 7.75 -10.98 -0.09 6.00 16 5 O -0.51 -8.42 16.08 -14.35 -0.23 -8.65 16 6 N -0.60 -5.29 2.36 -182.96 -0.43 -5.72 16 7 C 0.08 0.38 10.24 59.84 0.61 0.99 16 8 C 0.10 0.80 5.89 -5.19 -0.03 0.77 16 9 C 0.49 5.89 7.90 -10.99 -0.09 5.81 16 10 O -0.53 -8.79 16.43 5.56 0.09 -8.69 16 11 N -0.73 -7.54 5.56 -60.29 -0.33 -7.87 16 12 C 0.12 1.54 5.58 -4.04 -0.02 1.51 16 13 C -0.12 -1.45 4.84 -26.73 -0.13 -1.58 16 14 C -0.10 -1.61 2.45 -88.47 -0.22 -1.83 16 15 H 0.08 1.32 8.05 -51.93 -0.42 0.91 16 16 C 0.14 2.95 6.18 -2.53 -0.02 2.93 16 17 N -0.61 -15.97 3.39 -170.07 -0.58 -16.55 16 18 C -0.22 -6.47 10.28 -15.06 -0.15 -6.62 16 19 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 20 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 21 N -0.92 -27.71 10.31 55.49 0.57 -27.14 16 22 Si 0.91 22.80 29.55 -169.99 -5.02 17.77 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 C 0.18 4.50 4.97 -3.07 -0.02 4.49 16 27 C -0.11 -2.09 3.01 -88.78 -0.27 -2.35 16 28 H 0.06 1.11 8.04 -51.93 -0.42 0.69 16 29 C -0.13 -2.04 9.17 37.16 0.34 -1.70 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.08 0.39 8.11 -51.93 -0.42 -0.03 16 34 H 0.08 0.55 7.40 -51.93 -0.38 0.17 16 35 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 36 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16 37 H 0.07 0.28 6.44 -51.93 -0.33 -0.05 16 38 H 0.11 0.44 8.07 -51.93 -0.42 0.02 16 39 H 0.12 0.96 7.42 -51.93 -0.39 0.58 16 40 H 0.40 2.79 8.47 -40.82 -0.35 2.44 16 41 H 0.07 1.11 7.75 -51.93 -0.40 0.70 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 44 H 0.07 0.86 7.96 -51.93 -0.41 0.45 16 45 H 0.02 0.37 7.91 -51.93 -0.41 -0.04 16 46 H 0.04 0.79 8.14 -51.92 -0.42 0.36 16 47 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.05 1.28 7.02 -51.93 -0.36 0.91 16 49 H 0.04 1.07 7.50 -51.93 -0.39 0.68 16 50 H 0.04 0.55 8.08 -51.93 -0.42 0.13 16 51 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 52 H 0.05 0.87 8.07 -51.93 -0.42 0.46 16 LS Contribution 420.55 15.07 6.34 6.34 Total: -1.00 -39.64 420.55 -8.33 -47.96 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -9.29 Total: -2.72 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 1.13 Total: 9.86 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.77 Total: -57.28 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.70 Total: -21.94 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -39.64 -8.33 -47.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103053164.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.431 kcal (2) G-P(sol) polarization free energy of solvation -39.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds