Wall clock time and date at job start Wed Apr 1 2020 01:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.50701 * 109.46878 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99781 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99795 * 179.97438 * 4 3 2 7 7 C 1.46490 * 120.00111 * 0.02562 * 6 4 3 8 8 C 1.46497 * 119.99566 * 180.02562 * 6 4 3 9 9 C 1.50707 * 109.47162 * 90.00410 * 8 6 4 10 10 O 1.21278 * 119.99600 * 359.97438 * 9 8 6 11 11 N 1.34769 * 120.00129 * 179.97438 * 9 8 6 12 12 C 1.46502 * 120.00201 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47219 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.46963 * 180.02562 * 13 12 11 15 15 H 1.09004 * 110.88950 * 51.11837 * 14 13 12 16 16 C 1.54913 * 111.00501 * 287.19218 * 14 13 12 17 17 N 1.47424 * 104.83599 * 204.91401 * 16 14 13 18 18 C 1.36929 * 125.65126 * 204.07895 * 17 16 14 19 19 H 1.08001 * 119.99917 * 0.04094 * 18 17 16 20 20 C 1.38809 * 120.00138 * 180.02562 * 18 17 16 21 21 N 1.31624 * 120.00124 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 120.00079 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47114 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47119 * 120.00203 * 22 20 18 25 25 H 1.48504 * 109.46728 * 239.99865 * 22 20 18 26 26 C 1.47024 * 108.69831 * 24.13403 * 17 16 14 27 27 C 1.54320 * 107.27415 * 358.93444 * 26 17 16 28 28 H 1.09000 * 110.72108 * 96.17186 * 27 26 17 29 29 C 1.53005 * 110.87337 * 219.37414 * 27 26 17 30 30 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 32 32 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 33 33 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 34 34 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 35 35 H 1.08995 * 109.47620 * 89.99771 * 7 6 4 36 36 H 1.09006 * 109.47028 * 209.99878 * 7 6 4 37 37 H 1.09002 * 109.47109 * 329.99455 * 7 6 4 38 38 H 1.09000 * 109.47018 * 209.99971 * 8 6 4 39 39 H 1.09000 * 109.47828 * 330.00266 * 8 6 4 40 40 H 0.97002 * 120.00259 * 359.97438 * 11 9 8 41 41 H 1.08998 * 109.47108 * 300.00703 * 12 11 9 42 42 H 1.09002 * 109.46824 * 60.00264 * 12 11 9 43 43 H 1.09000 * 109.47241 * 299.99833 * 13 12 11 44 44 H 1.09000 * 109.47620 * 60.00138 * 13 12 11 45 45 H 1.08995 * 110.36608 * 323.76273 * 16 14 13 46 46 H 1.09009 * 110.36174 * 86.08000 * 16 14 13 47 47 H 0.96997 * 119.99834 * 179.97438 * 21 20 18 48 48 H 1.09001 * 109.88111 * 239.51734 * 26 17 16 49 49 H 1.09003 * 109.88113 * 118.35718 * 26 17 16 50 50 H 1.09003 * 109.46709 * 173.61136 * 29 27 26 51 51 H 1.08998 * 109.46708 * 293.60921 * 29 27 26 52 52 H 1.08992 * 109.46789 * 53.61323 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 8 4.0340 0.0916 0.0006 6 7 4.2763 2.2970 0.0002 7 6 3.6463 3.6195 -0.0003 8 6 5.7367 2.1813 0.0003 9 6 6.2375 2.1412 -1.4206 10 8 5.4518 2.2027 -2.3424 11 7 7.5584 2.0370 -1.6668 12 6 8.0453 1.9974 -3.0480 13 6 9.5705 1.8767 -3.0480 14 6 10.0788 1.8361 -4.4904 15 1 9.6697 2.6635 -5.0702 16 6 9.7526 0.4758 -5.1560 17 7 10.7627 0.3238 -6.2191 18 6 10.6273 -0.4439 -7.3448 19 1 9.7186 -1.0037 -7.5106 20 6 11.6577 -0.5026 -8.2730 21 7 12.7652 0.1794 -8.0708 22 14 11.4727 -1.5494 -9.8091 23 1 10.1437 -2.2120 -9.7995 24 1 11.5878 -0.6871 -11.0126 25 1 12.5398 -2.5818 -9.8360 26 6 11.9400 1.1321 -5.8696 27 6 11.6298 1.8399 -4.5339 28 1 12.0404 1.2779 -3.6951 29 6 12.1677 3.2723 -4.5382 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6885 1.8465 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.4900 3.9479 1.0272 36 1 4.2936 4.3301 -0.5144 37 1 2.6866 3.5645 -0.5142 38 1 6.1692 3.0400 0.5138 39 1 6.0288 1.2656 0.5144 40 1 8.1869 1.9882 -0.9295 41 1 7.6131 1.1383 -3.5611 42 1 7.7529 2.9128 -3.5626 43 1 10.0029 2.7356 -2.5348 44 1 9.8625 0.9612 -2.5335 45 1 9.8410 -0.3326 -4.4303 46 1 8.7505 0.4939 -5.5848 47 1 13.4853 0.1381 -8.7193 48 1 12.1252 1.8729 -6.6474 49 1 12.8112 0.4873 -5.7540 50 1 11.8394 3.7863 -3.6348 51 1 13.2570 3.2512 -4.5688 52 1 11.7897 3.7996 -5.4140 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103053164.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:24:07 Heat of formation + Delta-G solvation = -118.767553 kcal Electronic energy + Delta-G solvation = -29806.169455 eV Core-core repulsion = 25612.631138 eV Total energy + Delta-G solvation = -4193.538317 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.44373 -40.33399 -39.68435 -38.43595 -36.72382 -36.25757 -35.01182 -32.69369 -32.52324 -31.07955 -29.19956 -28.27787 -27.51648 -27.23912 -26.28660 -25.37241 -23.48131 -21.99299 -21.46359 -20.74609 -20.40909 -18.87881 -18.50911 -18.38570 -17.81881 -17.23412 -17.02205 -16.96863 -16.60363 -16.26052 -15.98128 -15.70449 -15.63942 -15.33377 -15.03751 -14.67643 -14.40808 -14.18193 -13.97956 -13.89807 -13.85026 -13.44683 -13.38167 -13.32654 -13.15714 -12.96457 -12.87756 -12.81655 -12.68237 -12.38125 -12.34892 -12.21974 -11.90459 -11.82817 -11.44157 -11.33358 -11.20448 -11.05435 -10.92862 -10.78540 -10.72853 -10.09611 -9.77264 -8.90280 -7.87251 -5.22508 1.35772 1.41760 1.42956 1.53642 1.60812 1.67993 2.31195 2.46786 2.97126 3.29780 3.55113 3.64238 3.73726 3.82589 3.94527 4.03916 4.06923 4.18187 4.21380 4.27133 4.31554 4.35426 4.39170 4.48251 4.51996 4.55700 4.61072 4.73962 4.74555 4.75614 4.82537 4.85398 4.93816 5.00445 5.03293 5.13400 5.18538 5.28350 5.29168 5.40507 5.44513 5.46170 5.53801 5.74866 5.83143 5.97714 6.19558 6.26379 6.55823 7.04525 7.09652 7.26254 7.77189 8.41544 9.22787 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014374 B = 0.001936 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.552242 B =14462.012072 C =16007.658134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.048 3.952 4 C 0.506 3.494 5 O -0.576 6.576 6 N -0.599 5.599 7 C 0.071 3.929 8 C 0.099 3.901 9 C 0.487 3.513 10 O -0.585 6.585 11 N -0.713 5.713 12 C 0.126 3.874 13 C -0.098 4.098 14 C -0.079 4.079 15 H 0.072 0.928 16 C 0.132 3.868 17 N -0.632 5.632 18 C -0.244 4.244 19 H 0.076 0.924 20 C -0.068 4.068 21 N -0.949 5.949 22 Si 0.978 3.022 23 H -0.269 1.269 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.190 3.810 27 C -0.101 4.101 28 H 0.080 0.920 29 C -0.126 4.126 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.120 0.880 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.161 0.839 39 H 0.112 0.888 40 H 0.420 0.580 41 H 0.037 0.963 42 H 0.061 0.939 43 H 0.103 0.897 44 H 0.077 0.923 45 H 0.021 0.979 46 H 0.028 0.972 47 H 0.247 0.753 48 H 0.011 0.989 49 H -0.001 1.001 50 H 0.085 0.915 51 H 0.052 0.948 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.318 13.522 25.817 34.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C -0.031 4.031 4 C 0.295 3.705 5 O -0.454 6.454 6 N -0.332 5.332 7 C -0.070 4.070 8 C -0.027 4.027 9 C 0.273 3.727 10 O -0.464 6.464 11 N -0.366 5.366 12 C 0.002 3.998 13 C -0.136 4.136 14 C -0.099 4.099 15 H 0.090 0.910 16 C 0.007 3.993 17 N -0.358 5.358 18 C -0.373 4.373 19 H 0.093 0.907 20 C -0.261 4.261 21 N -0.598 5.598 22 Si 0.806 3.194 23 H -0.194 1.194 24 H -0.216 1.216 25 H -0.216 1.216 26 C 0.065 3.935 27 C -0.121 4.121 28 H 0.098 0.902 29 C -0.183 4.183 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.137 0.863 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.179 0.821 39 H 0.130 0.870 40 H 0.257 0.743 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.122 0.878 44 H 0.095 0.905 45 H 0.039 0.961 46 H 0.046 0.954 47 H 0.056 0.944 48 H 0.029 0.971 49 H 0.017 0.983 50 H 0.104 0.896 51 H 0.071 0.929 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -19.416 12.776 24.992 34.129 hybrid contribution 0.428 -0.853 -1.466 1.750 sum -18.988 11.923 23.526 32.499 Atomic orbital electron populations 1.23040 0.78158 1.04155 1.01746 1.87970 1.22322 1.26989 1.95783 1.22419 0.89008 0.86656 1.05014 1.21028 0.90560 0.83803 0.75126 1.90707 1.75680 1.28528 1.50530 1.47494 1.05460 1.07547 1.72706 1.22185 0.99365 0.81348 1.04121 1.21509 0.81118 1.07898 0.92171 1.21890 0.82466 0.75215 0.93115 1.90697 1.56514 1.51247 1.47975 1.45864 1.07341 1.74135 1.09278 1.21218 0.94834 1.00904 0.82885 1.21594 0.92445 1.04344 0.95241 1.22202 0.95220 0.96395 0.96073 0.90980 1.21838 0.91671 0.95853 0.89961 1.44844 1.15622 1.54057 1.21250 1.19475 1.00671 1.20234 0.96921 0.90655 1.25663 0.96261 1.02048 1.02123 1.70205 1.06544 1.46230 1.36859 0.85011 0.77518 0.77794 0.79031 1.19382 1.21601 1.21645 1.21018 0.88114 0.91815 0.92588 1.22370 0.94934 0.97570 0.97184 0.90171 1.21629 1.00599 0.94053 1.02043 0.88947 0.91495 0.92624 0.86279 0.88408 0.88623 0.90265 0.89997 0.82140 0.86971 0.74278 0.94412 0.92070 0.87821 0.90469 0.96134 0.95410 0.94390 0.97063 0.98286 0.89623 0.92913 0.94113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -8.93 10.24 -129.94 -1.33 -10.26 16 3 C 0.05 0.73 4.97 71.24 0.35 1.08 16 4 C 0.51 11.58 7.75 87.66 0.68 12.26 16 5 O -0.58 -19.60 16.08 16.01 0.26 -19.34 16 6 N -0.60 -9.36 2.36 -851.14 -2.01 -11.37 16 7 C 0.07 0.44 10.24 127.77 1.31 1.75 16 8 C 0.10 1.38 5.89 85.64 0.50 1.89 16 9 C 0.49 11.00 7.90 87.66 0.69 11.70 16 10 O -0.58 -19.38 16.43 -3.02 -0.05 -19.43 16 11 N -0.71 -13.16 5.56 -463.07 -2.57 -15.73 16 12 C 0.13 3.07 5.58 86.38 0.48 3.55 16 13 C -0.10 -2.15 4.84 30.59 0.15 -2.01 16 14 C -0.08 -2.57 2.45 -9.40 -0.02 -2.59 16 15 H 0.07 2.43 8.05 -2.38 -0.02 2.41 16 16 C 0.13 5.68 6.18 86.86 0.54 6.22 16 17 N -0.63 -34.40 3.39 -691.98 -2.35 -36.75 16 18 C -0.24 -14.57 10.28 84.03 0.86 -13.71 16 19 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 20 C -0.07 -4.07 5.49 84.86 0.47 -3.61 16 21 N -0.95 -59.25 10.31 21.65 0.22 -59.02 16 22 Si 0.98 48.08 29.55 68.60 2.03 50.11 16 23 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 24 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 25 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 26 C 0.19 9.64 4.97 86.73 0.43 10.07 16 27 C -0.10 -3.56 3.01 -9.60 -0.03 -3.59 16 28 H 0.08 2.59 8.04 -2.39 -0.02 2.57 16 29 C -0.13 -3.58 9.17 71.98 0.66 -2.92 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 32 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.12 0.79 8.11 -2.39 -0.02 0.77 16 34 H 0.10 1.14 7.40 -2.39 -0.02 1.12 16 35 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 36 H 0.08 0.49 8.07 -2.38 -0.02 0.48 16 37 H 0.08 0.38 6.44 -2.39 -0.02 0.37 16 38 H 0.16 0.55 8.07 -2.39 -0.02 0.54 16 39 H 0.11 1.71 7.42 -2.39 -0.02 1.69 16 40 H 0.42 4.32 8.47 -92.71 -0.79 3.54 16 41 H 0.04 1.18 7.75 -2.39 -0.02 1.16 16 42 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.10 1.61 8.08 -2.39 -0.02 1.59 16 44 H 0.08 1.65 7.96 -2.39 -0.02 1.63 16 45 H 0.02 0.88 7.91 -2.39 -0.02 0.86 16 46 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 47 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 48 H 0.01 0.64 7.02 -2.39 -0.02 0.62 16 49 H 0.00 -0.06 7.50 -2.39 -0.02 -0.08 16 50 H 0.08 1.75 8.08 -2.39 -0.02 1.73 16 51 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 52 H 0.04 1.26 8.07 -2.39 -0.02 1.24 16 Total: -1.00 -94.69 420.55 2.63 -92.06 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 0.11 Total: 8.12 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: 8.32 Total: 21.62 kcal Atomic # 7 Polarization: -116.17 SS G_CDS: -6.71 Total: -122.88 kcal Atomic # 8 Polarization: -47.91 SS G_CDS: -1.12 Total: -49.03 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.11 kcal Total: -94.69 2.63 -92.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103053164.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.704 kcal (2) G-P(sol) polarization free energy of solvation -94.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds