Wall clock time and date at job start Wed Apr 1 2020 01:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42900 * 114.00024 * 2 1 4 4 C 1.50701 * 109.47064 * 180.02562 * 3 2 1 5 5 O 1.21280 * 119.99781 * 359.97438 * 4 3 2 6 6 N 1.34771 * 119.99622 * 180.02562 * 4 3 2 7 7 C 1.46505 * 119.99622 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47212 * 179.97438 * 7 6 4 9 9 C 1.50697 * 109.47466 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00011 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00369 * 180.02562 * 9 8 7 12 12 C 1.46505 * 120.00115 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.46784 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.46632 * 179.97438 * 13 12 11 15 15 H 1.09003 * 110.88553 * 51.12193 * 14 13 12 16 16 C 1.54909 * 111.00483 * 287.19847 * 14 13 12 17 17 N 1.47429 * 104.82901 * 204.91776 * 16 14 13 18 18 C 1.36935 * 125.64578 * 204.08272 * 17 16 14 19 19 H 1.07997 * 120.00265 * 0.02917 * 18 17 16 20 20 C 1.38816 * 120.00028 * 180.02562 * 18 17 16 21 21 N 1.31621 * 119.99733 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00356 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47316 * 89.99618 * 22 20 18 24 24 H 1.48498 * 109.47285 * 210.00458 * 22 20 18 25 25 H 1.48507 * 109.46790 * 330.00013 * 22 20 18 26 26 C 1.47019 * 108.70292 * 24.12895 * 17 16 14 27 27 C 1.54320 * 107.27242 * 358.93759 * 26 17 16 28 28 H 1.09009 * 110.71669 * 96.17336 * 27 26 17 29 29 C 1.52998 * 110.87397 * 219.37192 * 27 26 17 30 30 H 1.08996 * 109.47170 * 59.99906 * 1 2 3 31 31 H 1.08996 * 109.46843 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46657 * 300.00230 * 1 2 3 33 33 H 1.09001 * 109.47130 * 59.99795 * 3 2 1 34 34 H 1.09002 * 109.47002 * 299.99896 * 3 2 1 35 35 H 0.96996 * 120.00772 * 359.97438 * 6 4 3 36 36 H 1.09002 * 109.47068 * 299.99729 * 7 6 4 37 37 H 1.09001 * 109.47372 * 59.99816 * 7 6 4 38 38 H 1.09002 * 109.47153 * 300.00008 * 8 7 6 39 39 H 1.08998 * 109.47533 * 59.99637 * 8 7 6 40 40 H 0.97003 * 119.99640 * 0.02562 * 11 9 8 41 41 H 1.09002 * 109.46801 * 299.99526 * 12 11 9 42 42 H 1.08992 * 109.46823 * 59.99976 * 12 11 9 43 43 H 1.08992 * 109.47457 * 299.99933 * 13 12 11 44 44 H 1.09001 * 109.46962 * 59.99999 * 13 12 11 45 45 H 1.08992 * 110.36780 * 323.75137 * 16 14 13 46 46 H 1.08992 * 110.36709 * 86.08288 * 16 14 13 47 47 H 0.96998 * 119.99905 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.88278 * 239.52328 * 26 17 16 49 49 H 1.09004 * 109.88383 * 118.36065 * 26 17 16 50 50 H 1.09004 * 109.47411 * 173.61476 * 29 27 26 51 51 H 1.09002 * 109.47372 * 293.61290 * 29 27 26 52 52 H 1.08997 * 109.47241 * 53.61238 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 8 4.0341 0.0915 -0.0006 6 7 4.2765 2.2968 -0.0002 7 6 5.7369 2.1811 -0.0003 8 6 6.3593 3.5788 -0.0004 9 6 7.8615 3.4598 0.0002 10 8 8.3832 2.3649 0.0002 11 7 8.6255 4.5701 0.0007 12 6 10.0860 4.4544 0.0007 13 6 10.7083 5.8522 0.0007 14 6 12.2335 5.7314 0.0014 15 1 12.5707 5.0633 -0.7912 16 6 12.7527 5.2615 1.3831 17 7 14.1382 5.7600 1.4551 18 6 15.1363 5.2341 2.2312 19 1 14.9373 4.3795 2.8609 20 6 16.4040 5.7992 2.2085 21 7 16.6465 6.8409 1.4414 22 14 17.7658 5.0814 3.2666 23 1 18.4893 4.0355 2.4999 24 1 18.7135 6.1580 3.6513 25 1 17.1769 4.4798 4.4901 26 6 14.2706 6.9160 0.5564 27 6 12.9019 7.1258 -0.1249 28 1 12.3201 7.8816 0.4031 29 6 13.0780 7.5106 -1.5951 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.8594 3.1725 0.0001 36 1 6.0586 1.6399 0.8895 37 1 6.0586 1.6405 -0.8904 38 1 6.0376 4.1196 -0.8904 39 1 6.0377 4.1198 0.8895 40 1 8.2083 5.4459 0.0011 41 1 10.4075 3.9132 0.8905 42 1 10.4076 3.9139 -0.8895 43 1 10.3867 6.3931 -0.8892 44 1 10.3866 6.3931 0.8907 45 1 12.1514 5.6956 2.1819 46 1 12.7374 4.1734 1.4441 47 1 17.5324 7.2356 1.4253 48 1 15.0325 6.7149 -0.1966 49 1 14.5388 7.8030 1.1304 50 1 12.1032 7.5422 -2.0819 51 1 13.5484 8.4918 -1.6601 52 1 13.7080 6.7722 -2.0910 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103055420.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:23:48 Heat of formation + Delta-G solvation = -107.123962 kcal Electronic energy + Delta-G solvation = -28728.937193 eV Core-core repulsion = 24535.903780 eV Total energy + Delta-G solvation = -4193.033413 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.34177 -39.77217 -38.19863 -37.92256 -35.68492 -35.19633 -33.25986 -31.99918 -30.98502 -30.62992 -29.18656 -27.04972 -26.37501 -25.66432 -24.44263 -23.41351 -21.96795 -21.26235 -20.62430 -19.72991 -19.21869 -17.90360 -17.45942 -16.98051 -16.90002 -16.82069 -16.28010 -15.83821 -15.60378 -15.37423 -14.99035 -14.83156 -14.50117 -14.14726 -13.87704 -13.61149 -13.49204 -13.40305 -13.04096 -12.80899 -12.56194 -12.36929 -12.31614 -12.00379 -11.91743 -11.86654 -11.69965 -11.38091 -11.21840 -11.08213 -10.75836 -10.75199 -10.36032 -10.30484 -10.10975 -10.02108 -9.88474 -9.82866 -9.63732 -9.53801 -9.48321 -9.17285 -8.56680 -6.78464 -5.67652 -3.00584 2.19607 2.24836 2.42870 3.03770 3.42739 3.47872 3.49469 3.57864 4.14800 4.34813 4.50734 4.53133 4.55559 4.58012 4.61171 4.77396 4.82354 4.88081 4.97138 5.08163 5.15207 5.26897 5.45225 5.47826 5.50220 5.60592 5.61649 5.68255 5.73800 5.90594 5.91821 5.98731 6.08487 6.21525 6.23805 6.31701 6.36550 6.41209 6.51655 6.64170 6.67356 6.80323 6.99124 7.02116 7.29936 7.61014 7.67640 7.78892 7.87352 8.02842 8.30265 9.26502 9.86915 10.53279 11.44022 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.023034 B = 0.001429 C = 0.001362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.302460 B =19590.175544 C =20549.652922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.511 3.489 5 O -0.512 6.512 6 N -0.732 5.732 7 C 0.135 3.865 8 C -0.153 4.153 9 C 0.513 3.487 10 O -0.534 6.534 11 N -0.728 5.728 12 C 0.117 3.883 13 C -0.115 4.115 14 C -0.096 4.096 15 H 0.076 0.924 16 C 0.139 3.861 17 N -0.607 5.607 18 C -0.227 4.227 19 H 0.077 0.923 20 C -0.009 4.009 21 N -0.923 5.923 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.184 3.816 27 C -0.114 4.114 28 H 0.063 0.937 29 C -0.133 4.133 30 H 0.044 0.956 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.400 0.600 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.400 0.600 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.017 0.983 46 H 0.037 0.963 47 H 0.251 0.749 48 H 0.047 0.953 49 H 0.039 0.961 50 H 0.042 0.958 51 H 0.051 0.949 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.535 -0.285 -6.289 33.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.036 4.036 4 C 0.295 3.705 5 O -0.385 6.385 6 N -0.387 5.387 7 C 0.011 3.989 8 C -0.193 4.193 9 C 0.298 3.702 10 O -0.410 6.410 11 N -0.380 5.380 12 C -0.006 4.006 13 C -0.154 4.154 14 C -0.116 4.116 15 H 0.095 0.905 16 C 0.013 3.987 17 N -0.333 5.333 18 C -0.355 4.355 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.571 5.571 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.059 3.941 27 C -0.134 4.134 28 H 0.082 0.918 29 C -0.190 4.190 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.234 0.766 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.233 0.767 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.034 0.966 46 H 0.055 0.945 47 H 0.061 0.939 48 H 0.065 0.935 49 H 0.057 0.943 50 H 0.061 0.939 51 H 0.070 0.930 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -31.399 -2.048 -6.228 32.076 hybrid contribution 0.176 0.979 0.569 1.146 sum -31.222 -1.069 -5.658 31.749 Atomic orbital electron populations 1.22861 0.80157 1.03522 1.00158 1.88038 1.19948 1.25055 1.95420 1.22230 0.91482 0.87220 1.02688 1.20255 0.88700 0.84575 0.76923 1.90786 1.74529 1.26414 1.46792 1.45843 1.07199 1.08743 1.76925 1.21056 0.77673 0.95643 1.04499 1.21800 0.93280 0.99123 1.05144 1.20272 0.88812 0.84585 0.76565 1.90784 1.74978 1.26473 1.48783 1.46071 1.07810 1.08660 1.75417 1.21523 0.77783 0.98405 1.02902 1.21741 0.96309 0.95150 1.02175 1.22335 0.91762 0.97984 0.99493 0.90526 1.21616 0.87266 0.96814 0.92991 1.44467 1.05315 1.33570 1.49921 1.19081 0.88638 1.10372 1.17441 0.90497 1.24787 0.97510 0.98171 1.00032 1.69969 1.20954 1.24106 1.42033 0.86132 0.82006 0.77904 0.79830 1.21625 1.21708 1.20729 1.21199 0.90207 0.90398 0.92311 1.22479 0.99672 0.95272 0.95946 0.91839 1.21674 1.00173 1.01270 0.95925 0.93722 0.88953 0.93714 0.90113 0.90144 0.76615 0.90208 0.90261 0.88149 0.88096 0.76668 0.90883 0.91371 0.91648 0.91346 0.96580 0.94467 0.93851 0.93472 0.94279 0.93865 0.93009 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.24 16 2 O -0.37 -3.24 10.24 -55.14 -0.56 -3.81 16 3 C 0.04 0.25 6.42 36.01 0.23 0.48 16 4 C 0.51 4.65 7.91 -10.99 -0.09 4.56 16 5 O -0.51 -7.62 16.50 -14.35 -0.24 -7.85 16 6 N -0.73 -4.31 5.56 -60.29 -0.33 -4.64 16 7 C 0.13 1.12 4.96 -4.04 -0.02 1.10 16 8 C -0.15 -0.83 5.81 -27.89 -0.16 -0.99 16 9 C 0.51 5.23 7.83 -10.99 -0.09 5.14 16 10 O -0.53 -8.18 15.98 5.56 0.09 -8.10 16 11 N -0.73 -6.48 5.56 -60.29 -0.33 -6.81 16 12 C 0.12 1.38 5.58 -4.04 -0.02 1.36 16 13 C -0.12 -1.35 4.84 -26.73 -0.13 -1.48 16 14 C -0.10 -1.56 2.45 -88.47 -0.22 -1.78 16 15 H 0.08 1.30 8.05 -51.93 -0.42 0.88 16 16 C 0.14 2.84 6.19 -2.53 -0.02 2.83 16 17 N -0.61 -15.59 3.39 -170.08 -0.58 -16.17 16 18 C -0.23 -6.43 10.28 -15.06 -0.15 -6.59 16 19 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 20 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 21 N -0.92 -27.32 10.31 55.49 0.57 -26.75 16 22 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 C 0.18 4.41 4.97 -3.07 -0.02 4.40 16 27 C -0.11 -2.02 3.01 -88.79 -0.27 -2.29 16 28 H 0.06 1.06 8.04 -51.92 -0.42 0.65 16 29 C -0.13 -2.01 9.17 37.16 0.34 -1.66 16 30 H 0.04 0.13 8.14 -51.93 -0.42 -0.30 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.04 0.13 8.14 -51.93 -0.42 -0.29 16 33 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.40 0.69 8.47 -40.82 -0.35 0.35 16 36 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 37 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 38 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.40 2.21 8.47 -40.82 -0.35 1.87 16 41 H 0.07 1.02 7.75 -51.93 -0.40 0.61 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 44 H 0.07 0.77 7.96 -51.93 -0.41 0.36 16 45 H 0.02 0.33 7.90 -51.93 -0.41 -0.08 16 46 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 48 H 0.05 1.26 7.02 -51.93 -0.36 0.90 16 49 H 0.04 1.05 7.50 -51.93 -0.39 0.66 16 50 H 0.04 0.53 8.09 -51.93 -0.42 0.11 16 51 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 52 H 0.05 0.87 8.07 -51.93 -0.42 0.45 16 LS Contribution 423.49 15.07 6.38 6.38 Total: -1.00 -38.96 423.49 -9.00 -47.96 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -9.38 Total: -3.61 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: 0.41 Total: 5.97 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.67 Total: -54.37 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.71 Total: -19.76 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -38.96 -9.00 -47.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103055420.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.165 kcal (2) G-P(sol) polarization free energy of solvation -38.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds