Wall clock time and date at job start Wed Apr 1 2020 01:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42900 * 114.00024 * 2 1 4 4 C 1.50701 * 109.47064 * 180.02562 * 3 2 1 5 5 O 1.21280 * 119.99781 * 359.97438 * 4 3 2 6 6 N 1.34771 * 119.99622 * 180.02562 * 4 3 2 7 7 C 1.46505 * 119.99622 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47212 * 179.97438 * 7 6 4 9 9 C 1.50697 * 109.47466 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00011 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00369 * 180.02562 * 9 8 7 12 12 C 1.46505 * 120.00115 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.46784 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.46632 * 179.97438 * 13 12 11 15 15 H 1.09003 * 110.88553 * 51.12193 * 14 13 12 16 16 C 1.54909 * 111.00483 * 287.19847 * 14 13 12 17 17 N 1.47429 * 104.82901 * 204.91776 * 16 14 13 18 18 C 1.36935 * 125.64578 * 204.08272 * 17 16 14 19 19 H 1.07997 * 120.00265 * 0.02917 * 18 17 16 20 20 C 1.38816 * 120.00028 * 180.02562 * 18 17 16 21 21 N 1.31621 * 119.99733 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00356 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47316 * 89.99618 * 22 20 18 24 24 H 1.48498 * 109.47285 * 210.00458 * 22 20 18 25 25 H 1.48507 * 109.46790 * 330.00013 * 22 20 18 26 26 C 1.47019 * 108.70292 * 24.12895 * 17 16 14 27 27 C 1.54320 * 107.27242 * 358.93759 * 26 17 16 28 28 H 1.09009 * 110.71669 * 96.17336 * 27 26 17 29 29 C 1.52998 * 110.87397 * 219.37192 * 27 26 17 30 30 H 1.08996 * 109.47170 * 59.99906 * 1 2 3 31 31 H 1.08996 * 109.46843 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46657 * 300.00230 * 1 2 3 33 33 H 1.09001 * 109.47130 * 59.99795 * 3 2 1 34 34 H 1.09002 * 109.47002 * 299.99896 * 3 2 1 35 35 H 0.96996 * 120.00772 * 359.97438 * 6 4 3 36 36 H 1.09002 * 109.47068 * 299.99729 * 7 6 4 37 37 H 1.09001 * 109.47372 * 59.99816 * 7 6 4 38 38 H 1.09002 * 109.47153 * 300.00008 * 8 7 6 39 39 H 1.08998 * 109.47533 * 59.99637 * 8 7 6 40 40 H 0.97003 * 119.99640 * 0.02562 * 11 9 8 41 41 H 1.09002 * 109.46801 * 299.99526 * 12 11 9 42 42 H 1.08992 * 109.46823 * 59.99976 * 12 11 9 43 43 H 1.08992 * 109.47457 * 299.99933 * 13 12 11 44 44 H 1.09001 * 109.46962 * 59.99999 * 13 12 11 45 45 H 1.08992 * 110.36780 * 323.75137 * 16 14 13 46 46 H 1.08992 * 110.36709 * 86.08288 * 16 14 13 47 47 H 0.96998 * 119.99905 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.88278 * 239.52328 * 26 17 16 49 49 H 1.09004 * 109.88383 * 118.36065 * 26 17 16 50 50 H 1.09004 * 109.47411 * 173.61476 * 29 27 26 51 51 H 1.09002 * 109.47372 * 293.61290 * 29 27 26 52 52 H 1.08997 * 109.47241 * 53.61238 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 8 4.0341 0.0915 -0.0006 6 7 4.2765 2.2968 -0.0002 7 6 5.7369 2.1811 -0.0003 8 6 6.3593 3.5788 -0.0004 9 6 7.8615 3.4598 0.0002 10 8 8.3832 2.3649 0.0002 11 7 8.6255 4.5701 0.0007 12 6 10.0860 4.4544 0.0007 13 6 10.7083 5.8522 0.0007 14 6 12.2335 5.7314 0.0014 15 1 12.5707 5.0633 -0.7912 16 6 12.7527 5.2615 1.3831 17 7 14.1382 5.7600 1.4551 18 6 15.1363 5.2341 2.2312 19 1 14.9373 4.3795 2.8609 20 6 16.4040 5.7992 2.2085 21 7 16.6465 6.8409 1.4414 22 14 17.7658 5.0814 3.2666 23 1 18.4893 4.0355 2.4999 24 1 18.7135 6.1580 3.6513 25 1 17.1769 4.4798 4.4901 26 6 14.2706 6.9160 0.5564 27 6 12.9019 7.1258 -0.1249 28 1 12.3201 7.8816 0.4031 29 6 13.0780 7.5106 -1.5951 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.8594 3.1725 0.0001 36 1 6.0586 1.6399 0.8895 37 1 6.0586 1.6405 -0.8904 38 1 6.0376 4.1196 -0.8904 39 1 6.0377 4.1198 0.8895 40 1 8.2083 5.4459 0.0011 41 1 10.4075 3.9132 0.8905 42 1 10.4076 3.9139 -0.8895 43 1 10.3867 6.3931 -0.8892 44 1 10.3866 6.3931 0.8907 45 1 12.1514 5.6956 2.1819 46 1 12.7374 4.1734 1.4441 47 1 17.5324 7.2356 1.4253 48 1 15.0325 6.7149 -0.1966 49 1 14.5388 7.8030 1.1304 50 1 12.1032 7.5422 -2.0819 51 1 13.5484 8.4918 -1.6601 52 1 13.7080 6.7722 -2.0910 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103055420.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:23:48 Heat of formation + Delta-G solvation = -138.134519 kcal Electronic energy + Delta-G solvation = -28730.281912 eV Core-core repulsion = 24535.903780 eV Total energy + Delta-G solvation = -4194.378132 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.07287 -40.57691 -39.70857 -38.43761 -36.59892 -36.13791 -34.99068 -32.88721 -32.51450 -31.94706 -29.68884 -28.43037 -27.46083 -26.81324 -25.71230 -24.42964 -23.25591 -21.93201 -21.59833 -21.20686 -20.61560 -18.85503 -18.52201 -18.09411 -17.55462 -17.41138 -17.02087 -16.84227 -16.72483 -16.26852 -16.13756 -15.82871 -15.59398 -15.39039 -15.25477 -14.67239 -14.44687 -14.33076 -14.13462 -14.02088 -13.76490 -13.41998 -13.33756 -13.13960 -12.92781 -12.92279 -12.77391 -12.68842 -12.45240 -12.36317 -12.33910 -12.18983 -11.90749 -11.79941 -11.41150 -11.27306 -11.15776 -11.03373 -10.79675 -10.74715 -10.69974 -10.21312 -10.04238 -8.87962 -7.85506 -5.20434 1.43209 1.45216 1.53780 1.54188 1.66297 1.69641 2.35163 2.48512 3.16834 3.31993 3.61099 3.67579 3.77895 3.81963 3.97487 4.00758 4.07751 4.08687 4.23101 4.31495 4.31927 4.38987 4.51631 4.54302 4.55702 4.60074 4.64184 4.75957 4.78846 4.86128 4.86371 4.89745 4.94880 5.02472 5.07065 5.15373 5.21806 5.30628 5.32462 5.41888 5.46878 5.49805 5.56798 5.76707 5.84811 6.06541 6.21357 6.54109 6.62607 7.11491 7.23180 7.32807 7.79678 8.43735 9.24397 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.023034 B = 0.001429 C = 0.001362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.302460 B =19590.175544 C =20549.652922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.047 3.953 4 C 0.502 3.498 5 O -0.584 6.584 6 N -0.707 5.707 7 C 0.137 3.863 8 C -0.133 4.133 9 C 0.506 3.494 10 O -0.596 6.596 11 N -0.711 5.711 12 C 0.122 3.878 13 C -0.097 4.097 14 C -0.081 4.081 15 H 0.068 0.932 16 C 0.132 3.868 17 N -0.631 5.631 18 C -0.246 4.246 19 H 0.077 0.923 20 C -0.065 4.065 21 N -0.950 5.950 22 Si 0.976 3.024 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.271 1.271 26 C 0.189 3.811 27 C -0.101 4.101 28 H 0.082 0.918 29 C -0.127 4.127 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.425 0.575 36 H 0.046 0.954 37 H 0.049 0.951 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.422 0.578 41 H 0.045 0.955 42 H 0.054 0.946 43 H 0.100 0.900 44 H 0.082 0.918 45 H 0.026 0.974 46 H 0.029 0.971 47 H 0.246 0.754 48 H 0.008 0.992 49 H -0.001 1.001 50 H 0.084 0.916 51 H 0.051 0.949 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.196 2.039 -6.806 36.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C -0.032 4.032 4 C 0.289 3.711 5 O -0.463 6.463 6 N -0.363 5.363 7 C 0.012 3.988 8 C -0.172 4.172 9 C 0.293 3.707 10 O -0.476 6.476 11 N -0.364 5.364 12 C -0.002 4.002 13 C -0.135 4.135 14 C -0.101 4.101 15 H 0.086 0.914 16 C 0.007 3.993 17 N -0.357 5.357 18 C -0.375 4.375 19 H 0.095 0.905 20 C -0.258 4.258 21 N -0.599 5.599 22 Si 0.804 3.196 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.196 1.196 26 C 0.064 3.936 27 C -0.120 4.120 28 H 0.101 0.899 29 C -0.184 4.184 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.264 0.736 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.159 0.841 39 H 0.156 0.844 40 H 0.260 0.740 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.118 0.882 44 H 0.101 0.899 45 H 0.044 0.956 46 H 0.047 0.953 47 H 0.055 0.945 48 H 0.027 0.973 49 H 0.017 0.983 50 H 0.103 0.897 51 H 0.071 0.929 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -35.142 0.374 -6.744 35.785 hybrid contribution 1.298 0.245 0.758 1.523 sum -33.843 0.618 -5.986 34.374 Atomic orbital electron populations 1.23026 0.78180 1.04026 1.01823 1.87977 1.22254 1.27251 1.95846 1.22420 0.88307 0.86674 1.05841 1.21134 0.90597 0.84020 0.75383 1.90756 1.76015 1.29195 1.50299 1.45583 1.06023 1.09464 1.75187 1.20818 0.79215 0.97194 1.01569 1.21739 0.89070 0.97601 1.08821 1.21130 0.90834 0.83710 0.75016 1.90774 1.76409 1.28912 1.51551 1.45842 1.06420 1.09647 1.74462 1.21243 0.79766 0.98151 1.01081 1.21584 0.92147 0.95270 1.04535 1.22213 0.95123 0.96464 0.96287 0.91373 1.21848 0.85068 0.96362 0.95986 1.44825 1.06927 1.34249 1.49749 1.19463 0.89852 1.10414 1.17742 0.90511 1.25619 0.99780 0.98806 1.01611 1.70197 1.20957 1.25297 1.43419 0.85115 0.78951 0.77023 0.78489 1.21388 1.21739 1.19551 1.21008 0.93337 0.88302 0.90904 1.22361 0.95777 0.96571 0.97282 0.89927 1.21634 1.02247 1.00676 0.93863 0.91948 0.89251 0.92020 0.86748 0.86662 0.73566 0.93540 0.93299 0.84064 0.84378 0.74048 0.93621 0.92710 0.88188 0.89922 0.95640 0.95302 0.94451 0.97343 0.98274 0.89670 0.92949 0.94329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.43 16 2 O -0.41 -6.97 10.24 -129.94 -1.33 -8.31 16 3 C 0.05 0.41 6.42 71.24 0.46 0.87 16 4 C 0.50 8.79 7.91 87.66 0.69 9.48 16 5 O -0.58 -18.40 16.50 16.01 0.26 -18.14 16 6 N -0.71 -6.81 5.56 -463.06 -2.57 -9.38 16 7 C 0.14 2.19 4.96 86.38 0.43 2.61 16 8 C -0.13 -0.97 5.81 29.85 0.17 -0.80 16 9 C 0.51 9.41 7.83 87.66 0.69 10.09 16 10 O -0.60 -18.75 15.98 -3.04 -0.05 -18.80 16 11 N -0.71 -10.36 5.56 -463.05 -2.57 -12.93 16 12 C 0.12 2.66 5.58 86.38 0.48 3.14 16 13 C -0.10 -1.91 4.84 30.60 0.15 -1.76 16 14 C -0.08 -2.51 2.45 -9.40 -0.02 -2.53 16 15 H 0.07 2.25 8.05 -2.39 -0.02 2.23 16 16 C 0.13 5.41 6.19 86.85 0.54 5.95 16 17 N -0.63 -33.43 3.39 -692.01 -2.35 -35.78 16 18 C -0.25 -14.36 10.28 84.03 0.86 -13.49 16 19 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 20 C -0.07 -3.83 5.49 84.86 0.47 -3.37 16 21 N -0.95 -58.52 10.31 21.65 0.22 -58.30 16 22 Si 0.98 47.27 29.55 68.60 2.03 49.30 16 23 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 24 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 25 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 26 C 0.19 9.42 4.97 86.73 0.43 9.85 16 27 C -0.10 -3.41 3.01 -9.61 -0.03 -3.44 16 28 H 0.08 2.52 8.04 -2.38 -0.02 2.50 16 29 C -0.13 -3.53 9.17 71.98 0.66 -2.87 16 30 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.20 8.14 -2.38 -0.02 0.18 16 33 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.43 -0.38 8.47 -92.71 -0.79 -1.17 16 36 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 37 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 38 H 0.14 0.00 8.14 -2.39 -0.02 -0.02 16 39 H 0.14 0.10 8.14 -2.39 -0.02 0.08 16 40 H 0.42 2.45 8.47 -92.71 -0.79 1.67 16 41 H 0.05 1.26 7.75 -2.39 -0.02 1.24 16 42 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.10 1.39 8.09 -2.39 -0.02 1.37 16 44 H 0.08 1.47 7.96 -2.39 -0.02 1.45 16 45 H 0.03 1.01 7.90 -2.39 -0.02 0.99 16 46 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 48 H 0.01 0.47 7.02 -2.39 -0.02 0.45 16 49 H 0.00 -0.06 7.50 -2.38 -0.02 -0.07 16 50 H 0.08 1.70 8.09 -2.38 -0.02 1.68 16 51 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 52 H 0.04 1.19 8.07 -2.39 -0.02 1.17 16 Total: -1.00 -96.19 423.49 0.20 -95.99 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -0.66 Total: 1.18 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 7.22 Total: 15.17 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -7.27 Total: -116.39 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -1.11 Total: -45.24 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -96.19 0.20 -95.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103055420.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.145 kcal (2) G-P(sol) polarization free energy of solvation -96.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds