Wall clock time and date at job start Wed Apr 1 2020 01:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99817 * 2 1 4 4 C 1.53000 * 109.47153 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47280 * 179.97438 * 4 3 2 6 6 O 1.21287 * 120.00122 * 359.97438 * 5 4 3 7 7 N 1.34781 * 120.00384 * 180.02562 * 5 4 3 8 8 C 1.47418 * 125.64367 * 0.03844 * 7 5 4 9 9 C 1.55121 * 104.94346 * 203.96891 * 8 7 5 10 10 H 1.09001 * 110.93359 * 81.21201 * 9 8 7 11 11 C 1.53002 * 111.16716 * 205.13030 * 9 8 7 12 12 C 1.55153 * 101.48305 * 323.22625 * 9 8 7 13 13 H 1.09005 * 110.71603 * 276.82277 * 12 9 8 14 14 C 1.53005 * 110.72093 * 153.73623 * 12 9 8 15 15 C 1.52998 * 109.47042 * 177.43990 * 14 12 9 16 16 N 1.46898 * 109.47159 * 179.97438 * 15 14 12 17 17 C 1.46904 * 111.00201 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.46892 * 179.97438 * 17 16 15 19 19 O 1.21291 * 120.00763 * 359.72740 * 18 17 16 20 20 N 1.34784 * 119.99774 * 179.97438 * 18 17 16 21 21 C 1.37092 * 119.99968 * 179.72830 * 20 18 17 22 22 H 1.08005 * 120.00127 * 359.97438 * 21 20 18 23 23 C 1.38955 * 120.00107 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99828 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00407 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46887 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47066 * 120.00183 * 25 23 21 28 28 H 1.48499 * 109.47339 * 240.00683 * 25 23 21 29 29 C 1.47017 * 125.64807 * 179.97438 * 7 5 4 30 30 H 1.09007 * 109.46901 * 299.99665 * 1 2 3 31 31 H 1.08998 * 109.47370 * 60.00317 * 1 2 3 32 32 H 1.09006 * 109.46661 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47297 * 59.99886 * 3 2 1 34 34 H 1.09003 * 109.47040 * 299.99886 * 3 2 1 35 35 H 1.09000 * 109.47322 * 59.99644 * 4 3 2 36 36 H 1.09003 * 109.46845 * 299.99749 * 4 3 2 37 37 H 1.09000 * 110.36873 * 322.93399 * 8 7 5 38 38 H 1.09002 * 110.37137 * 85.25831 * 8 7 5 39 39 H 1.08997 * 109.47032 * 172.16918 * 11 9 8 40 40 H 1.09002 * 109.47115 * 292.17345 * 11 9 8 41 41 H 1.08998 * 109.46891 * 52.16879 * 11 9 8 42 42 H 1.08999 * 109.47398 * 57.43379 * 14 12 9 43 43 H 1.08999 * 109.46477 * 297.43624 * 14 12 9 44 44 H 1.08999 * 109.47523 * 59.99466 * 15 14 12 45 45 H 1.09004 * 109.47198 * 299.99675 * 15 14 12 46 46 H 1.00907 * 110.99840 * 303.94876 * 16 15 14 47 47 H 1.09001 * 109.46900 * 60.00109 * 17 16 15 48 48 H 1.08993 * 109.47169 * 299.99830 * 17 16 15 49 49 H 0.97005 * 119.99846 * 359.72750 * 20 18 17 50 50 H 0.96990 * 120.00373 * 180.02562 * 24 23 21 51 51 H 1.09000 * 109.88279 * 59.56136 * 29 7 5 52 52 H 1.09000 * 109.88665 * 298.38774 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1484 2.5614 -0.0013 6 8 3.4355 3.5426 -0.0017 7 7 5.4888 2.7024 -0.0024 8 6 6.4685 1.6008 -0.0040 9 6 7.7582 2.2117 0.6040 10 1 7.7050 2.2295 1.6926 11 6 9.0028 1.4583 0.1303 12 6 7.7231 3.6494 0.0220 13 1 8.1389 3.6678 -0.9855 14 6 8.4754 4.6211 0.9336 15 6 8.4777 6.0147 0.3023 16 7 9.1995 6.9477 1.1778 17 6 9.2227 8.2990 0.6021 18 6 9.9692 9.2260 1.5264 19 8 10.4317 8.8039 2.5652 20 7 10.1186 10.5255 1.2012 21 6 10.7928 11.3700 2.0447 22 1 11.2040 10.9942 2.9700 23 6 10.9473 12.7096 1.7092 24 7 10.4466 13.1670 0.5835 25 14 11.8655 13.8606 2.8587 26 1 12.3269 13.1050 4.0510 27 1 13.0389 14.4339 2.1519 28 1 10.9610 14.9577 3.2871 29 6 6.2159 3.9801 -0.0037 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.8568 0.6439 -0.8908 36 1 3.8574 0.6436 0.8892 37 1 6.1119 0.7751 0.6118 38 1 6.6566 1.2617 -1.0227 39 1 9.8960 1.9900 0.4582 40 1 9.0022 0.4536 0.5530 41 1 8.9967 1.3947 -0.9578 42 1 9.5022 4.2783 1.0615 43 1 7.9828 4.6630 1.9050 44 1 7.4510 6.3574 0.1744 45 1 8.9703 5.9727 -0.6692 46 1 8.8004 6.9560 2.1046 47 1 8.2011 8.6576 0.4757 48 1 9.7210 8.2726 -0.3668 49 1 9.7490 10.8631 0.3703 50 1 10.5547 14.1019 0.3491 51 1 5.9487 4.5596 0.8800 52 1 5.9751 4.5429 -0.9055 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103801539.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:23:25 Heat of formation + Delta-G solvation = -130.868278 kcal Electronic energy + Delta-G solvation = -28949.741666 eV Core-core repulsion = 24755.678622 eV Total energy + Delta-G solvation = -4194.063044 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.65504 -38.81751 -38.25521 -37.92834 -35.84904 -33.95776 -33.53409 -32.32416 -31.78246 -31.16567 -28.52855 -27.13320 -26.76994 -26.07613 -24.51409 -23.56722 -22.81163 -21.25907 -20.44344 -19.61238 -19.18151 -17.86724 -17.73612 -17.03641 -16.64464 -16.21986 -16.10090 -15.66670 -15.53671 -15.28170 -14.79813 -14.64030 -14.43991 -14.26730 -13.99427 -13.90956 -13.63866 -13.43691 -13.07738 -12.98046 -12.95923 -12.57088 -12.34100 -12.26823 -12.05572 -11.95507 -11.87523 -11.64028 -11.52123 -11.49562 -11.40400 -11.05933 -11.00675 -10.77886 -10.64980 -10.33143 -10.23255 -10.20769 -10.13562 -9.50565 -9.03415 -8.44421 -8.03716 -7.94135 -6.40297 -3.81039 2.24284 2.43177 3.17487 3.27890 3.35266 3.36193 3.92584 3.96742 4.03830 4.10118 4.24161 4.35351 4.50171 4.56754 4.63492 4.82018 4.88674 4.91042 4.91840 4.95285 5.01749 5.06683 5.07591 5.21592 5.22297 5.24287 5.25830 5.31400 5.33444 5.36755 5.39268 5.48717 5.55062 5.61697 5.66782 5.79368 5.82809 5.86888 5.91016 6.00055 6.12275 6.13952 6.29410 6.64695 7.09702 7.24090 7.56815 7.68392 7.75804 8.08207 8.62984 9.19508 9.56134 10.07597 10.77589 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017994 B = 0.001536 C = 0.001445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.723628 B =18224.955841 C =19367.900134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.396 6.396 3 C 0.075 3.925 4 C -0.135 4.135 5 C 0.531 3.469 6 O -0.540 6.540 7 N -0.618 5.618 8 C 0.100 3.900 9 C -0.100 4.100 10 H 0.088 0.912 11 C -0.142 4.142 12 C -0.093 4.093 13 H 0.089 0.911 14 C -0.106 4.106 15 C 0.057 3.943 16 N -0.670 5.670 17 C 0.051 3.949 18 C 0.441 3.559 19 O -0.584 6.584 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 C 0.110 3.890 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.026 0.974 45 H 0.071 0.929 46 H 0.349 0.651 47 H 0.043 0.957 48 H 0.085 0.915 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.072 0.928 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.783 -28.541 -5.745 32.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C -0.002 4.002 4 C -0.174 4.174 5 C 0.320 3.680 6 O -0.417 6.417 7 N -0.352 5.352 8 C -0.023 4.023 9 C -0.119 4.119 10 H 0.107 0.893 11 C -0.199 4.199 12 C -0.113 4.113 13 H 0.107 0.893 14 C -0.144 4.144 15 C -0.073 4.073 16 N -0.302 5.302 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.012 4.012 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.044 0.956 45 H 0.089 0.911 46 H 0.168 0.832 47 H 0.061 0.939 48 H 0.104 0.896 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.090 0.910 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.217 -28.427 -5.368 31.806 hybrid contribution -0.888 1.428 0.021 1.682 sum -14.105 -26.999 -5.347 30.928 Atomic orbital electron populations 1.22749 0.80422 1.02814 1.00333 1.87789 1.20214 1.27936 1.95598 1.22168 0.91779 0.84290 1.01932 1.21441 0.95455 0.94932 1.05611 1.20071 0.80589 0.91171 0.76186 1.90748 1.60013 1.40974 1.49994 1.48462 1.04833 1.08600 1.73317 1.22537 0.88513 0.89923 1.01279 1.22451 0.94025 0.94502 1.00952 0.89345 1.21706 0.96841 1.00008 1.01366 1.22330 0.93610 0.94603 1.00749 0.89285 1.21547 1.01262 0.93525 0.98041 1.22009 0.95940 0.92114 0.97218 1.60071 1.57808 1.06673 1.05671 1.21665 0.98919 0.88973 0.98653 1.19831 0.85961 0.83130 0.88443 1.90517 1.53468 1.76054 1.26741 1.41876 1.49601 1.06873 1.21753 1.19762 1.30581 0.89417 1.03094 0.87866 1.25263 0.97995 0.97660 0.97048 1.69619 1.45735 1.16209 1.22774 0.85799 0.78866 0.79686 0.79989 1.19208 1.20751 1.20786 1.22116 0.90841 0.85663 1.02594 0.93853 0.93868 0.89461 0.92273 0.92308 0.88036 0.88009 0.90361 0.90918 0.91452 0.92267 0.92282 0.90077 0.91638 0.95558 0.91098 0.83234 0.93908 0.89648 0.77460 0.91940 0.90994 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.40 -3.31 10.70 -35.23 -0.38 -3.69 16 3 C 0.08 0.62 5.23 37.16 0.19 0.81 16 4 C -0.13 -0.95 5.07 -27.88 -0.14 -1.10 16 5 C 0.53 5.38 7.85 -10.98 -0.09 5.29 16 6 O -0.54 -7.65 16.31 5.55 0.09 -7.56 16 7 N -0.62 -5.31 3.33 -170.39 -0.57 -5.88 16 8 C 0.10 0.56 6.18 -2.42 -0.01 0.54 16 9 C -0.10 -0.58 3.10 -88.36 -0.27 -0.86 16 10 H 0.09 0.56 8.05 -51.93 -0.42 0.14 16 11 C -0.14 -0.68 9.32 37.16 0.35 -0.34 16 12 C -0.09 -0.69 2.42 -88.78 -0.21 -0.90 16 13 H 0.09 0.62 8.04 -51.93 -0.42 0.20 16 14 C -0.11 -0.98 4.87 -26.73 -0.13 -1.11 16 15 C 0.06 0.67 5.55 -3.83 -0.02 0.64 16 16 N -0.67 -10.79 6.13 -115.06 -0.71 -11.49 16 17 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 18 C 0.44 10.58 7.82 -10.98 -0.09 10.50 16 19 O -0.58 -16.06 15.77 5.55 0.09 -15.97 16 20 N -0.56 -14.52 5.29 -10.96 -0.06 -14.58 16 21 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 22 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.78 13.05 55.50 0.72 -24.06 16 25 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 C 0.11 1.01 5.73 -3.07 -0.02 0.99 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 34 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 0.58 7.85 -51.93 -0.41 0.17 16 37 H 0.08 0.32 7.48 -51.93 -0.39 -0.07 16 38 H 0.07 0.34 7.99 -51.93 -0.41 -0.08 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 41 H 0.06 0.26 8.08 -51.93 -0.42 -0.16 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.63 8.01 -51.93 -0.42 0.22 16 44 H 0.03 0.30 7.58 -51.93 -0.39 -0.09 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.35 5.83 8.43 -39.29 -0.33 5.49 16 47 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 49 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 50 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 51 H 0.07 0.76 7.73 -51.93 -0.40 0.36 16 52 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 425.28 15.07 6.41 6.41 Total: -1.00 -34.47 425.28 -8.35 -42.83 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -9.33 Total: 9.24 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 0.40 Total: 8.56 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.61 Total: -56.01 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.20 Total: -27.22 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -34.47 -8.35 -42.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103801539.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.040 kcal (2) G-P(sol) polarization free energy of solvation -34.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds