Wall clock time and date at job start Wed Apr 1 2020 01:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99817 * 2 1 4 4 C 1.53000 * 109.47153 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47280 * 179.97438 * 4 3 2 6 6 O 1.21287 * 120.00122 * 359.97438 * 5 4 3 7 7 N 1.34781 * 120.00384 * 180.02562 * 5 4 3 8 8 C 1.47418 * 125.64367 * 0.03844 * 7 5 4 9 9 C 1.55121 * 104.94346 * 203.96891 * 8 7 5 10 10 H 1.09001 * 110.93359 * 81.21201 * 9 8 7 11 11 C 1.53002 * 111.16716 * 205.13030 * 9 8 7 12 12 C 1.55153 * 101.48305 * 323.22625 * 9 8 7 13 13 H 1.09005 * 110.71603 * 276.82277 * 12 9 8 14 14 C 1.53005 * 110.72093 * 153.73623 * 12 9 8 15 15 C 1.52998 * 109.47042 * 177.43990 * 14 12 9 16 16 N 1.46898 * 109.47159 * 179.97438 * 15 14 12 17 17 C 1.46904 * 111.00201 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.46892 * 179.97438 * 17 16 15 19 19 O 1.21291 * 120.00763 * 359.72740 * 18 17 16 20 20 N 1.34784 * 119.99774 * 179.97438 * 18 17 16 21 21 C 1.37092 * 119.99968 * 179.72830 * 20 18 17 22 22 H 1.08005 * 120.00127 * 359.97438 * 21 20 18 23 23 C 1.38955 * 120.00107 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99828 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00407 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46887 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47066 * 120.00183 * 25 23 21 28 28 H 1.48499 * 109.47339 * 240.00683 * 25 23 21 29 29 C 1.47017 * 125.64807 * 179.97438 * 7 5 4 30 30 H 1.09007 * 109.46901 * 299.99665 * 1 2 3 31 31 H 1.08998 * 109.47370 * 60.00317 * 1 2 3 32 32 H 1.09006 * 109.46661 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47297 * 59.99886 * 3 2 1 34 34 H 1.09003 * 109.47040 * 299.99886 * 3 2 1 35 35 H 1.09000 * 109.47322 * 59.99644 * 4 3 2 36 36 H 1.09003 * 109.46845 * 299.99749 * 4 3 2 37 37 H 1.09000 * 110.36873 * 322.93399 * 8 7 5 38 38 H 1.09002 * 110.37137 * 85.25831 * 8 7 5 39 39 H 1.08997 * 109.47032 * 172.16918 * 11 9 8 40 40 H 1.09002 * 109.47115 * 292.17345 * 11 9 8 41 41 H 1.08998 * 109.46891 * 52.16879 * 11 9 8 42 42 H 1.08999 * 109.47398 * 57.43379 * 14 12 9 43 43 H 1.08999 * 109.46477 * 297.43624 * 14 12 9 44 44 H 1.08999 * 109.47523 * 59.99466 * 15 14 12 45 45 H 1.09004 * 109.47198 * 299.99675 * 15 14 12 46 46 H 1.00907 * 110.99840 * 303.94876 * 16 15 14 47 47 H 1.09001 * 109.46900 * 60.00109 * 17 16 15 48 48 H 1.08993 * 109.47169 * 299.99830 * 17 16 15 49 49 H 0.97005 * 119.99846 * 359.72750 * 20 18 17 50 50 H 0.96990 * 120.00373 * 180.02562 * 24 23 21 51 51 H 1.09000 * 109.88279 * 59.56136 * 29 7 5 52 52 H 1.09000 * 109.88665 * 298.38774 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1484 2.5614 -0.0013 6 8 3.4355 3.5426 -0.0017 7 7 5.4888 2.7024 -0.0024 8 6 6.4685 1.6008 -0.0040 9 6 7.7582 2.2117 0.6040 10 1 7.7050 2.2295 1.6926 11 6 9.0028 1.4583 0.1303 12 6 7.7231 3.6494 0.0220 13 1 8.1389 3.6678 -0.9855 14 6 8.4754 4.6211 0.9336 15 6 8.4777 6.0147 0.3023 16 7 9.1995 6.9477 1.1778 17 6 9.2227 8.2990 0.6021 18 6 9.9692 9.2260 1.5264 19 8 10.4317 8.8039 2.5652 20 7 10.1186 10.5255 1.2012 21 6 10.7928 11.3700 2.0447 22 1 11.2040 10.9942 2.9700 23 6 10.9473 12.7096 1.7092 24 7 10.4466 13.1670 0.5835 25 14 11.8655 13.8606 2.8587 26 1 12.3269 13.1050 4.0510 27 1 13.0389 14.4339 2.1519 28 1 10.9610 14.9577 3.2871 29 6 6.2159 3.9801 -0.0037 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.8568 0.6439 -0.8908 36 1 3.8574 0.6436 0.8892 37 1 6.1119 0.7751 0.6118 38 1 6.6566 1.2617 -1.0227 39 1 9.8960 1.9900 0.4582 40 1 9.0022 0.4536 0.5530 41 1 8.9967 1.3947 -0.9578 42 1 9.5022 4.2783 1.0615 43 1 7.9828 4.6630 1.9050 44 1 7.4510 6.3574 0.1744 45 1 8.9703 5.9727 -0.6692 46 1 8.8004 6.9560 2.1046 47 1 8.2011 8.6576 0.4757 48 1 9.7210 8.2726 -0.3668 49 1 9.7490 10.8631 0.3703 50 1 10.5547 14.1019 0.3491 51 1 5.9487 4.5596 0.8800 52 1 5.9751 4.5429 -0.9055 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103801539.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:23:24 Heat of formation + Delta-G solvation = -156.569879 kcal Electronic energy + Delta-G solvation = -28950.856171 eV Core-core repulsion = 24755.678622 eV Total energy + Delta-G solvation = -4195.177549 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.35286 -40.17838 -39.43976 -38.60560 -37.05897 -35.90424 -34.41352 -33.29537 -32.90010 -32.52193 -29.55381 -27.94743 -27.30132 -27.19436 -25.92177 -24.54749 -23.66013 -22.02855 -21.21479 -20.88017 -20.28098 -19.90772 -18.39809 -17.80714 -17.69436 -17.29870 -17.04417 -16.82306 -16.48173 -16.24028 -16.02398 -15.79942 -15.54067 -15.33944 -15.26165 -14.87329 -14.63162 -14.40599 -14.21236 -13.78274 -13.61587 -13.52107 -13.45785 -13.31922 -13.09700 -12.90725 -12.82864 -12.68417 -12.49052 -12.42034 -12.41117 -12.19111 -12.13020 -12.11711 -11.60372 -11.55446 -11.51544 -11.28468 -11.04177 -10.71875 -10.36152 -10.02947 -9.74114 -9.34056 -8.47879 -5.96899 1.36114 1.41388 1.49529 1.55897 1.78564 2.03299 2.28549 2.80538 2.91114 3.19248 3.40867 3.50255 3.53817 3.71393 3.81562 3.97115 4.06728 4.21338 4.22710 4.29251 4.35412 4.41363 4.42426 4.48942 4.49243 4.50374 4.54006 4.61085 4.62655 4.67287 4.70376 4.75895 4.78660 4.83705 4.86583 4.92476 4.95508 5.12982 5.19107 5.26359 5.28533 5.39959 5.43036 5.54944 5.88661 6.09088 6.10127 6.38923 6.42763 6.58605 7.02003 7.11198 7.54444 8.09587 8.69811 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017994 B = 0.001536 C = 0.001445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.723628 B =18224.955841 C =19367.900134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.077 3.923 4 C -0.124 4.124 5 C 0.525 3.475 6 O -0.591 6.591 7 N -0.617 5.617 8 C 0.098 3.902 9 C -0.095 4.095 10 H 0.084 0.916 11 C -0.138 4.138 12 C -0.082 4.082 13 H 0.100 0.900 14 C -0.097 4.097 15 C 0.058 3.942 16 N -0.683 5.683 17 C 0.064 3.936 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.271 1.271 29 C 0.108 3.892 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.105 0.895 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.058 0.942 44 H 0.029 0.971 45 H 0.081 0.919 46 H 0.342 0.658 47 H 0.062 0.938 48 H 0.105 0.895 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.052 0.948 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.531 -30.314 -6.579 33.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.001 4.001 4 C -0.163 4.163 5 C 0.315 3.685 6 O -0.473 6.473 7 N -0.350 5.350 8 C -0.023 4.023 9 C -0.114 4.114 10 H 0.102 0.898 11 C -0.195 4.195 12 C -0.102 4.102 13 H 0.119 0.881 14 C -0.135 4.135 15 C -0.070 4.070 16 N -0.315 5.315 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.562 5.562 25 Si 0.818 3.182 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.196 1.196 29 C -0.015 4.015 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.123 0.877 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.077 0.923 44 H 0.048 0.952 45 H 0.099 0.901 46 H 0.160 0.840 47 H 0.079 0.921 48 H 0.123 0.877 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.070 0.930 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.956 -30.237 -6.237 33.481 hybrid contribution -0.997 1.938 0.271 2.196 sum -13.953 -28.299 -5.965 32.111 Atomic orbital electron populations 1.22949 0.79248 1.04131 1.00735 1.87761 1.21597 1.27707 1.95625 1.22100 0.92766 0.84259 1.00932 1.21405 0.94324 0.93164 1.07452 1.20638 0.80805 0.91763 0.75286 1.90722 1.61273 1.42759 1.52502 1.48569 1.04927 1.09309 1.72149 1.22784 0.87344 0.89372 1.02824 1.22427 0.94907 0.93342 1.00686 0.89809 1.21681 0.95622 1.00317 1.01911 1.22238 0.91802 0.95159 1.00985 0.88133 1.21455 1.01438 0.92582 0.98024 1.22120 0.95650 0.92254 0.97009 1.60112 1.59139 1.06179 1.06061 1.21533 0.98993 0.88684 0.97597 1.20894 0.84993 0.83132 0.88566 1.90483 1.54977 1.76735 1.28771 1.41947 1.49878 1.07496 1.21708 1.19726 1.32627 0.90767 1.03349 0.90290 1.26058 0.98243 0.98447 0.98491 1.69678 1.45885 1.16934 1.23660 0.84854 0.77988 0.77541 0.77844 1.19740 1.19508 1.19611 1.22070 0.92196 0.86078 1.01156 0.93550 0.93434 0.87712 0.93472 0.93295 0.85930 0.86094 0.88219 0.89119 0.92279 0.91020 0.91492 0.90140 0.92311 0.95241 0.90064 0.83971 0.92055 0.87698 0.76988 0.91279 0.93003 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.41 -6.35 10.70 -148.98 -1.59 -7.94 16 3 C 0.08 1.23 5.23 71.98 0.38 1.61 16 4 C -0.12 -1.55 5.07 29.85 0.15 -1.40 16 5 C 0.52 10.35 7.85 87.66 0.69 11.04 16 6 O -0.59 -17.32 16.31 -3.05 -0.05 -17.37 16 7 N -0.62 -9.84 3.33 -811.38 -2.70 -12.54 16 8 C 0.10 0.80 6.18 86.93 0.54 1.34 16 9 C -0.09 -0.88 3.10 -9.33 -0.03 -0.91 16 10 H 0.08 0.89 8.05 -2.39 -0.02 0.87 16 11 C -0.14 -0.94 9.32 71.98 0.67 -0.27 16 12 C -0.08 -1.08 2.42 -9.60 -0.02 -1.11 16 13 H 0.10 1.15 8.04 -2.38 -0.02 1.13 16 14 C -0.10 -1.71 4.87 30.60 0.15 -1.56 16 15 C 0.06 1.30 5.55 86.30 0.48 1.78 16 16 N -0.68 -21.67 6.13 -517.94 -3.17 -24.85 16 17 C 0.06 2.27 6.17 85.56 0.53 2.79 16 18 C 0.44 21.27 7.82 87.65 0.69 21.96 16 19 O -0.62 -35.20 15.77 -3.06 -0.05 -35.25 16 20 N -0.57 -30.03 5.29 -306.97 -1.62 -31.65 16 21 C -0.34 -19.36 9.68 84.04 0.81 -18.55 16 22 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 23 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 24 N -0.92 -50.26 13.05 21.66 0.28 -49.98 16 25 Si 0.99 43.38 29.55 68.60 2.03 45.41 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 28 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 29 C 0.11 1.94 5.73 86.73 0.50 2.43 16 30 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 34 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 35 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.12 1.07 7.85 -2.39 -0.02 1.05 16 37 H 0.10 0.44 7.48 -2.39 -0.02 0.43 16 38 H 0.09 0.49 7.99 -2.39 -0.02 0.47 16 39 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.07 0.37 8.08 -2.39 -0.02 0.35 16 42 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.06 1.12 8.01 -2.39 -0.02 1.10 16 44 H 0.03 0.65 7.58 -2.39 -0.02 0.64 16 45 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 46 H 0.34 11.55 8.43 -89.69 -0.76 10.79 16 47 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 48 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 49 H 0.40 19.71 7.90 -92.70 -0.73 18.98 16 50 H 0.28 14.13 8.31 -92.72 -0.77 13.36 16 51 H 0.05 1.13 7.73 -2.39 -0.02 1.12 16 52 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -76.28 425.28 -0.22 -76.50 By element: Atomic # 1 Polarization: 37.79 SS G_CDS: -0.58 Total: 37.21 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: 7.24 Total: 20.45 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -7.21 Total: -119.02 kcal Atomic # 8 Polarization: -58.87 SS G_CDS: -1.69 Total: -60.56 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -76.28 -0.22 -76.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103801539.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.065 kcal (2) G-P(sol) polarization free energy of solvation -76.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds