Wall clock time and date at job start Wed Apr 1 2020 01:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99978 * 2 1 4 4 H 1.09002 * 109.47303 * 329.99879 * 3 2 1 5 5 C 1.52999 * 109.46956 * 90.00352 * 3 2 1 6 6 C 1.50701 * 109.47032 * 209.99976 * 3 2 1 7 7 O 1.21285 * 119.99937 * 350.63339 * 6 3 2 8 8 N 1.34774 * 119.99869 * 170.62807 * 6 3 2 9 9 C 1.48150 * 127.84018 * 354.86956 * 8 6 3 10 10 C 1.54390 * 104.61602 * 140.41243 * 9 8 6 11 11 H 1.09001 * 110.43261 * 142.78536 * 10 9 8 12 12 C 1.53001 * 110.34055 * 264.99882 * 10 9 8 13 13 C 1.54289 * 104.96121 * 23.87021 * 10 9 8 14 14 H 1.09000 * 110.34189 * 241.02330 * 13 10 9 15 15 C 1.53000 * 110.34276 * 118.87107 * 13 10 9 16 16 C 1.52999 * 109.46985 * 176.47597 * 15 13 10 17 17 N 1.46897 * 109.46917 * 180.02562 * 16 15 13 18 18 C 1.46900 * 110.99946 * 180.02562 * 17 16 15 19 19 C 1.50696 * 109.47283 * 179.97438 * 18 17 16 20 20 O 1.21295 * 120.00082 * 359.72318 * 19 18 17 21 21 N 1.34776 * 120.00247 * 179.97438 * 19 18 17 22 22 C 1.37096 * 120.00248 * 179.72290 * 21 19 18 23 23 H 1.08003 * 119.99906 * 0.02562 * 22 21 19 24 24 C 1.38950 * 120.00222 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00128 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 120.00045 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47140 * 89.99514 * 26 24 22 28 28 H 1.48501 * 109.47176 * 210.00076 * 26 24 22 29 29 H 1.48498 * 109.46908 * 329.99791 * 26 24 22 30 30 C 1.48317 * 127.76807 * 174.79719 * 8 6 3 31 31 H 1.08998 * 109.47282 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47053 * 300.00010 * 1 2 3 33 33 H 1.09001 * 109.46747 * 59.99481 * 1 2 3 34 34 H 1.08999 * 109.47274 * 65.47196 * 5 3 2 35 35 H 1.09003 * 109.47216 * 185.47333 * 5 3 2 36 36 H 1.09002 * 109.47302 * 305.46844 * 5 3 2 37 37 H 1.09000 * 110.40110 * 21.63343 * 9 8 6 38 38 H 1.08997 * 110.41079 * 259.19725 * 9 8 6 39 39 H 1.09011 * 109.46893 * 175.53905 * 12 10 9 40 40 H 1.08992 * 109.47467 * 295.53552 * 12 10 9 41 41 H 1.09001 * 109.47215 * 55.54369 * 12 10 9 42 42 H 1.09000 * 109.47051 * 56.47245 * 15 13 10 43 43 H 1.08998 * 109.46894 * 296.47220 * 15 13 10 44 44 H 1.09000 * 109.47514 * 59.99931 * 16 15 13 45 45 H 1.08998 * 109.46996 * 299.99559 * 16 15 13 46 46 H 1.00904 * 110.99989 * 303.94767 * 17 16 15 47 47 H 1.08998 * 109.47661 * 59.99524 * 18 17 16 48 48 H 1.09001 * 109.46808 * 299.99303 * 18 17 16 49 49 H 0.96998 * 119.99940 * 359.72325 * 21 19 18 50 50 H 0.97002 * 119.99979 * 180.02562 * 25 24 22 51 51 H 1.09008 * 110.38424 * 100.79497 * 30 8 6 52 52 H 1.08996 * 110.51067 * 338.31423 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2177 1.7713 1.4425 6 6 3.3386 1.2639 -0.7104 7 8 3.8272 0.1981 -1.0209 8 7 3.9837 2.4110 -1.0007 9 6 3.5055 3.7987 -0.7994 10 6 4.7489 4.5722 -0.3103 11 1 4.7591 5.5791 -0.7276 12 6 4.7716 4.6307 1.2184 13 6 5.9533 3.7624 -0.8341 14 1 6.5620 3.4079 -0.0023 15 6 6.7964 4.6166 -1.7829 16 6 8.0306 3.8254 -2.2208 17 7 8.8404 4.6458 -3.1313 18 6 10.0364 3.9166 -3.5739 19 6 10.8400 4.7877 -4.5047 20 8 10.4519 5.9041 -4.7770 21 7 11.9875 4.3243 -5.0387 22 6 12.7157 5.1147 -5.8899 23 1 12.3700 6.1087 -6.1324 24 6 13.8984 4.6368 -6.4408 25 7 14.5967 5.3945 -7.2564 26 14 14.4960 2.9172 -6.0221 27 1 13.9395 1.9480 -7.0000 28 1 15.9795 2.8812 -6.0787 29 1 14.0438 2.5554 -4.6547 30 6 5.3343 2.5689 -1.5930 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 2.9575 1.1342 1.9272 35 1 2.5697 2.8029 1.4441 36 1 1.2737 1.7087 1.9839 37 1 2.7205 3.8241 -0.0436 38 1 3.1435 4.2161 -1.7389 39 1 5.6932 5.1094 1.5500 40 1 3.9160 5.2052 1.5728 41 1 4.7223 3.6191 1.6215 42 1 7.1106 5.5261 -1.2708 43 1 6.2036 4.8793 -2.6590 44 1 7.7164 2.9160 -2.7330 45 1 8.6234 3.5627 -1.3447 46 1 8.2941 4.9565 -3.9207 47 1 9.7357 3.0082 -4.0959 48 1 10.6431 3.6538 -2.7073 49 1 12.2981 3.4317 -4.8206 50 1 15.4221 5.0608 -7.6413 51 1 5.2584 2.7932 -2.6571 52 1 5.9282 1.6687 -1.4350 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103945936.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:23:28 Heat of formation + Delta-G solvation = -112.998272 kcal Electronic energy + Delta-G solvation = -29678.372814 eV Core-core repulsion = 25485.084672 eV Total energy + Delta-G solvation = -4193.288142 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.80086 -39.04798 -38.44080 -37.62161 -35.94537 -33.99808 -33.51747 -32.26579 -31.76816 -31.54790 -28.40133 -27.33616 -26.99338 -26.38267 -24.78100 -23.66169 -22.92389 -21.38313 -20.31072 -19.89837 -19.34832 -18.31286 -17.86448 -17.07393 -16.44355 -16.14552 -16.03380 -15.78731 -15.66751 -15.10895 -14.78300 -14.60116 -14.30015 -14.22472 -13.97765 -13.70661 -13.63106 -13.45912 -13.28322 -13.11476 -13.00239 -12.65988 -12.45686 -12.44084 -12.33974 -12.16853 -11.99208 -11.91939 -11.66135 -11.54974 -11.45536 -11.15850 -10.95872 -10.85445 -10.75987 -10.58015 -10.47621 -9.96463 -9.89008 -9.56097 -9.11872 -8.57949 -8.18557 -8.12095 -6.30142 -3.81528 2.21787 2.25486 3.04326 3.08268 3.16409 3.37956 3.75612 3.87857 4.05046 4.06481 4.11739 4.27992 4.31180 4.43658 4.47042 4.68765 4.76328 4.83380 4.84781 4.85976 4.90104 5.00779 5.08262 5.09845 5.12615 5.18402 5.19521 5.19974 5.24546 5.34700 5.42240 5.52922 5.55315 5.57536 5.60701 5.66567 5.67970 5.73867 5.83322 5.92639 5.96496 6.05384 6.12226 6.51978 7.10949 7.12160 7.58473 7.60158 7.78953 8.15605 8.60989 8.96007 9.43666 9.84037 10.82964 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021150 B = 0.001689 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.559842 B =16576.371521 C =17403.068126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.074 3.926 4 H 0.083 0.917 5 C -0.172 4.172 6 C 0.535 3.465 7 O -0.518 6.518 8 N -0.623 5.623 9 C 0.097 3.903 10 C -0.103 4.103 11 H 0.093 0.907 12 C -0.146 4.146 13 C -0.096 4.096 14 H 0.085 0.915 15 C -0.107 4.107 16 C 0.056 3.944 17 N -0.669 5.669 18 C 0.048 3.952 19 C 0.450 3.550 20 O -0.565 6.565 21 N -0.591 5.591 22 C -0.305 4.305 23 H 0.120 0.880 24 C 0.042 3.958 25 N -0.882 5.882 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.269 1.269 30 C 0.110 3.890 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.027 0.973 45 H 0.071 0.929 46 H 0.350 0.650 47 H 0.044 0.956 48 H 0.087 0.913 49 H 0.371 0.629 50 H 0.273 0.727 51 H 0.075 0.925 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.986 -6.918 19.494 35.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.013 3.987 4 H 0.101 0.899 5 C -0.230 4.230 6 C 0.322 3.678 7 O -0.392 6.392 8 N -0.359 5.359 9 C -0.026 4.026 10 C -0.122 4.122 11 H 0.111 0.889 12 C -0.203 4.203 13 C -0.116 4.116 14 H 0.104 0.896 15 C -0.145 4.145 16 C -0.073 4.073 17 N -0.302 5.302 18 C -0.085 4.085 19 C 0.236 3.764 20 O -0.447 6.447 21 N -0.230 5.230 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.161 4.161 25 N -0.522 5.522 26 Si 0.706 3.294 27 H -0.197 1.197 28 H -0.202 1.202 29 H -0.195 1.195 30 C -0.012 4.012 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.045 0.955 45 H 0.089 0.911 46 H 0.169 0.831 47 H 0.062 0.938 48 H 0.105 0.895 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.093 0.907 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -28.419 -6.684 19.523 35.121 hybrid contribution 0.096 -1.731 -0.416 1.782 sum -28.323 -8.415 19.107 35.187 Atomic orbital electron populations 1.22903 0.80430 1.03431 1.00068 1.88061 1.19787 1.25052 1.94935 1.21860 0.93228 0.86840 0.96779 0.89879 1.22303 1.03677 1.02235 0.94778 1.19988 0.86196 0.82598 0.79000 1.90750 1.67414 1.28773 1.52297 1.48944 1.18618 1.05327 1.63000 1.22662 0.97360 0.81231 1.01338 1.22178 0.93691 0.99613 0.96705 0.88882 1.21887 1.02328 1.01892 0.94196 1.22209 0.95908 0.94808 0.98635 0.89642 1.21626 0.95217 0.98787 0.98883 1.22022 0.94005 0.94267 0.97040 1.60071 1.08234 1.39614 1.22264 1.21702 0.93142 0.94962 0.98708 1.19725 0.83237 0.88561 0.84906 1.90560 1.70412 1.20519 1.63244 1.42212 1.21583 1.15939 1.43300 1.19437 1.03029 1.00523 1.20431 0.86286 1.25036 0.96228 0.98194 0.96679 1.69623 1.15639 1.36511 1.30382 0.86671 0.79473 0.84456 0.78795 1.19653 1.20158 1.19463 1.22531 0.82379 0.99016 0.97273 0.88973 0.93737 0.93782 0.91022 0.90528 0.91026 0.90074 0.90561 0.91843 0.92439 0.92587 0.90145 0.91527 0.95486 0.91094 0.83092 0.93771 0.89526 0.79677 0.91625 0.90709 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.25 16 2 O -0.36 -3.54 9.90 -54.97 -0.54 -4.09 16 3 C 0.07 0.57 2.39 -27.88 -0.07 0.51 16 4 H 0.08 0.43 7.63 -51.93 -0.40 0.04 16 5 C -0.17 -0.94 9.34 37.16 0.35 -0.59 16 6 C 0.53 5.82 7.23 -10.99 -0.08 5.74 16 7 O -0.52 -8.15 16.83 -14.18 -0.24 -8.39 16 8 N -0.62 -5.21 3.32 -169.16 -0.56 -5.77 16 9 C 0.10 0.49 6.21 -2.41 -0.01 0.48 16 10 C -0.10 -0.53 3.31 -89.22 -0.30 -0.83 16 11 H 0.09 0.44 7.71 -51.93 -0.40 0.04 16 12 C -0.15 -0.68 8.79 37.16 0.33 -0.36 16 13 C -0.10 -0.67 2.73 -89.22 -0.24 -0.91 16 14 H 0.09 0.63 7.71 -51.93 -0.40 0.23 16 15 C -0.11 -0.90 4.65 -26.73 -0.12 -1.02 16 16 C 0.06 0.61 5.54 -3.83 -0.02 0.59 16 17 N -0.67 -10.08 6.13 -115.06 -0.71 -10.79 16 18 C 0.05 0.79 6.17 -4.98 -0.03 0.76 16 19 C 0.45 10.29 7.82 -10.99 -0.09 10.21 16 20 O -0.57 -15.24 15.77 5.54 0.09 -15.16 16 21 N -0.59 -14.22 5.09 -10.96 -0.06 -14.28 16 22 C -0.31 -8.72 10.16 -14.93 -0.15 -8.87 16 23 H 0.12 3.87 7.39 -52.48 -0.39 3.49 16 24 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 25 N -0.88 -25.89 13.96 55.50 0.77 -25.12 16 26 Si 0.88 19.56 27.74 -169.99 -4.71 14.84 16 27 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 28 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 29 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 30 C 0.11 0.94 5.78 -2.31 -0.01 0.93 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.04 0.16 7.78 -51.93 -0.40 -0.24 16 33 H 0.04 0.19 8.08 -51.93 -0.42 -0.23 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.30 5.59 -51.93 -0.29 0.01 16 36 H 0.07 0.29 7.78 -51.93 -0.40 -0.12 16 37 H 0.08 0.27 5.19 -51.93 -0.27 0.00 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 40 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.06 0.30 7.81 -51.93 -0.41 -0.11 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.55 8.02 -51.93 -0.42 0.13 16 44 H 0.03 0.28 7.53 -51.93 -0.39 -0.11 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.35 5.43 8.43 -39.29 -0.33 5.10 16 47 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 49 H 0.37 7.84 5.76 -40.82 -0.24 7.61 16 50 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 51 H 0.07 0.64 7.78 -51.92 -0.40 0.23 16 52 H 0.08 0.85 7.93 -51.93 -0.41 0.44 16 LS Contribution 415.58 15.07 6.26 6.26 Total: -1.00 -36.83 415.58 -8.09 -44.92 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -8.94 Total: 8.63 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: 0.54 Total: 8.93 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.55 Total: -55.95 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.70 Total: -27.63 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.71 Total: 14.84 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -36.83 -8.09 -44.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103945936.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.075 kcal (2) G-P(sol) polarization free energy of solvation -36.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds