Wall clock time and date at job start Wed Apr 1 2020 01:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42906 * 114.00278 * 2 1 4 4 H 1.08997 * 109.47033 * 30.00166 * 3 2 1 5 5 C 1.53001 * 109.46939 * 270.00306 * 3 2 1 6 6 C 1.50695 * 109.47158 * 150.00072 * 3 2 1 7 7 O 1.21287 * 120.00253 * 5.00388 * 6 3 2 8 8 N 1.34779 * 119.99955 * 185.00192 * 6 3 2 9 9 C 1.48147 * 127.83874 * 359.97135 * 8 6 3 10 10 C 1.54382 * 104.61909 * 140.42108 * 9 8 6 11 11 H 1.08993 * 110.34875 * 142.73921 * 10 9 8 12 12 C 1.53006 * 110.34260 * 265.00037 * 10 9 8 13 13 C 1.54285 * 104.95753 * 23.86868 * 10 9 8 14 14 H 1.08999 * 110.34323 * 241.02114 * 13 10 9 15 15 C 1.53005 * 110.34139 * 118.87509 * 13 10 9 16 16 C 1.52998 * 109.47042 * 176.47599 * 15 13 10 17 17 N 1.46898 * 109.47159 * 179.97438 * 16 15 13 18 18 C 1.46904 * 111.00201 * 179.97438 * 17 16 15 19 19 C 1.50697 * 109.46892 * 179.97438 * 18 17 16 20 20 O 1.21291 * 120.00763 * 359.72740 * 19 18 17 21 21 N 1.34784 * 119.99774 * 179.97438 * 19 18 17 22 22 C 1.37092 * 119.99968 * 179.72830 * 21 19 18 23 23 H 1.08005 * 120.00127 * 359.97438 * 22 21 19 24 24 C 1.38955 * 120.00107 * 179.97438 * 22 21 19 25 25 N 1.31413 * 119.99828 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00407 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46887 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47066 * 120.00183 * 26 24 22 29 29 H 1.48499 * 109.47339 * 240.00683 * 26 24 22 30 30 C 1.48317 * 127.77109 * 179.91438 * 8 6 3 31 31 H 1.08995 * 109.46786 * 299.99820 * 1 2 3 32 32 H 1.08998 * 109.46665 * 60.00007 * 1 2 3 33 33 H 1.08995 * 109.46830 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47230 * 59.99391 * 5 3 2 35 35 H 1.08997 * 109.47101 * 179.97438 * 5 3 2 36 36 H 1.09010 * 109.47032 * 299.99618 * 5 3 2 37 37 H 1.09006 * 110.40390 * 21.63921 * 9 8 6 38 38 H 1.08998 * 110.41093 * 259.20952 * 9 8 6 39 39 H 1.09005 * 109.46973 * 175.53448 * 12 10 9 40 40 H 1.08997 * 109.47115 * 295.53351 * 12 10 9 41 41 H 1.08999 * 109.47062 * 55.53737 * 12 10 9 42 42 H 1.08999 * 109.47398 * 56.46988 * 15 13 10 43 43 H 1.08999 * 109.46477 * 296.47233 * 15 13 10 44 44 H 1.08999 * 109.47523 * 59.99466 * 16 15 13 45 45 H 1.09004 * 109.47198 * 299.99675 * 16 15 13 46 46 H 1.00907 * 110.99840 * 303.94876 * 17 16 15 47 47 H 1.09001 * 109.46900 * 60.00109 * 18 17 16 48 48 H 1.08993 * 109.47169 * 299.99830 * 18 17 16 49 49 H 0.97005 * 119.99846 * 359.72750 * 21 19 18 50 50 H 0.96990 * 120.00373 * 180.02562 * 25 24 22 51 51 H 1.08991 * 110.38797 * 100.78531 * 30 8 6 52 52 H 1.09003 * 110.50642 * 338.29482 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3387 1.2639 0.7104 7 8 3.7898 0.2044 1.0913 8 7 4.0255 2.4040 0.9224 9 6 3.6423 3.7814 0.5342 10 6 4.0724 4.6572 1.7305 11 1 4.4572 5.6149 1.3801 12 6 2.8944 4.8724 2.6830 13 6 5.1886 3.8546 2.4307 14 1 4.8985 3.6153 3.4538 15 6 6.4983 4.6456 2.4216 16 6 7.5669 3.8716 3.1961 17 7 8.8245 4.6307 3.1868 18 6 9.8760 3.9166 3.9234 19 6 11.1482 4.7238 3.8916 20 8 11.1778 5.7867 3.3081 21 7 12.2547 4.2621 4.5073 22 6 13.4136 4.9937 4.4736 23 1 13.4401 5.9398 3.9534 24 6 14.5543 4.5181 5.1089 25 7 14.5222 3.3666 5.7414 26 14 16.1336 5.5145 5.0624 27 1 15.9082 6.7636 4.2915 28 1 16.5444 5.8559 6.4481 29 1 17.2034 4.7166 4.4113 30 6 5.3360 2.5627 1.5985 31 1 -0.3633 0.5138 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.2569 1.8014 -1.9563 35 1 2.6606 2.7673 -1.4426 36 1 2.8830 1.0774 -1.9564 37 1 2.5648 3.8476 0.3827 38 1 4.1732 4.0836 -0.3685 39 1 3.2325 5.4243 3.5601 40 1 2.1152 5.4401 2.1746 41 1 2.4966 3.9061 2.9929 42 1 6.3400 5.6160 2.8919 43 1 6.8283 4.7899 1.3928 44 1 7.7252 2.9011 2.7257 45 1 7.2369 3.7272 4.2249 46 1 9.1178 4.8331 2.2427 47 1 10.0501 2.9462 3.4586 48 1 9.5620 3.7733 4.9572 49 1 12.2311 3.4122 4.9743 50 1 15.3183 3.0347 6.1852 51 1 6.1321 2.6736 0.8624 52 1 5.5352 1.7117 2.2498 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103945937.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:23:31 Heat of formation + Delta-G solvation = -147.194591 kcal Electronic energy + Delta-G solvation = -29569.170191 eV Core-core repulsion = 25374.399185 eV Total energy + Delta-G solvation = -4194.771006 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.45546 -40.17874 -39.61286 -38.33683 -37.05238 -35.89731 -34.41138 -33.28943 -32.66081 -32.38463 -29.36432 -27.81244 -27.57941 -27.43914 -26.07231 -24.78567 -23.79850 -22.11017 -21.13721 -20.81792 -20.51900 -19.90411 -18.49781 -17.82073 -17.63544 -17.15146 -17.09061 -16.55604 -16.44969 -16.21223 -15.99201 -15.84713 -15.27039 -15.17249 -14.94748 -14.83248 -14.49919 -14.35663 -14.08251 -13.81204 -13.62571 -13.56836 -13.40075 -13.35819 -13.23199 -12.98589 -12.85724 -12.79971 -12.73743 -12.41187 -12.32648 -12.21386 -12.11067 -11.99478 -11.56584 -11.52049 -11.48796 -11.39055 -11.06562 -10.56914 -10.35321 -10.02564 -9.80891 -9.32462 -8.47378 -5.96513 1.36685 1.41872 1.47186 1.56473 1.64475 2.03873 2.28950 2.86757 2.93472 3.19756 3.35514 3.52395 3.57963 3.74301 3.80813 3.86973 3.98423 4.17856 4.26726 4.30843 4.34092 4.38300 4.42613 4.50790 4.52230 4.52524 4.58365 4.60721 4.62821 4.66727 4.71345 4.76500 4.84004 4.88118 4.90399 4.94415 5.05371 5.15325 5.16850 5.27794 5.31849 5.36958 5.40540 5.55109 5.89187 6.05551 6.10468 6.43174 6.46987 6.58909 7.04818 7.11549 7.54985 8.09850 8.70309 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024322 B = 0.001587 C = 0.001535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.935776 B =17638.546031 C =18239.171475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.400 6.400 3 C 0.076 3.924 4 H 0.115 0.885 5 C -0.167 4.167 6 C 0.524 3.476 7 O -0.583 6.583 8 N -0.618 5.618 9 C 0.096 3.904 10 C -0.098 4.098 11 H 0.107 0.893 12 C -0.142 4.142 13 C -0.086 4.086 14 H 0.079 0.921 15 C -0.096 4.096 16 C 0.057 3.943 17 N -0.681 5.681 18 C 0.064 3.936 19 C 0.438 3.562 20 O -0.622 6.622 21 N -0.574 5.574 22 C -0.335 4.335 23 H 0.080 0.920 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.995 3.005 27 H -0.272 1.272 28 H -0.271 1.271 29 H -0.271 1.271 30 C 0.105 3.895 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.050 0.950 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.043 0.957 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.031 0.969 45 H 0.072 0.928 46 H 0.345 0.655 47 H 0.062 0.938 48 H 0.101 0.899 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.077 0.923 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.319 -0.653 -12.055 34.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.319 6.319 3 C 0.015 3.985 4 H 0.132 0.868 5 C -0.225 4.225 6 C 0.313 3.687 7 O -0.463 6.463 8 N -0.352 5.352 9 C -0.025 4.025 10 C -0.117 4.117 11 H 0.125 0.875 12 C -0.199 4.199 13 C -0.105 4.105 14 H 0.098 0.902 15 C -0.134 4.134 16 C -0.072 4.072 17 N -0.314 5.314 18 C -0.069 4.069 19 C 0.225 3.775 20 O -0.508 6.508 21 N -0.211 5.211 22 C -0.464 4.464 23 H 0.098 0.902 24 C -0.214 4.214 25 N -0.562 5.562 26 Si 0.819 3.181 27 H -0.197 1.197 28 H -0.196 1.196 29 H -0.196 1.196 30 C -0.018 4.018 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.069 0.931 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.049 0.951 45 H 0.091 0.909 46 H 0.163 0.837 47 H 0.080 0.920 48 H 0.119 0.881 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.095 0.905 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -32.062 -0.502 -11.626 34.109 hybrid contribution 1.285 -1.007 0.010 1.632 sum -30.778 -1.510 -11.616 32.931 Atomic orbital electron populations 1.23097 0.78454 1.04202 1.01587 1.88015 1.22115 1.26598 1.95199 1.21995 0.91689 0.86846 0.97929 0.86785 1.22284 1.04434 1.02581 0.93152 1.20773 0.86874 0.82125 0.78921 1.90710 1.71005 1.31300 1.53260 1.49037 1.21445 1.07224 1.57506 1.22922 1.02697 0.78692 0.98193 1.22198 0.95276 0.99175 0.95073 0.87461 1.21842 0.97444 1.01318 0.99309 1.22080 0.95352 0.93560 0.99557 0.90241 1.21530 0.92166 0.98945 1.00740 1.22122 0.89088 0.94788 1.01208 1.60094 1.03177 1.46929 1.21176 1.21530 0.89357 0.94664 1.01338 1.20866 0.85907 0.87829 0.82859 1.90480 1.85566 1.25834 1.48961 1.41959 1.09242 1.21677 1.48238 1.19737 0.88667 1.04476 1.33561 0.90181 1.26076 1.02277 0.97460 0.95539 1.69682 1.31618 1.19984 1.34946 0.84839 0.76994 0.77971 0.78330 1.19651 1.19603 1.19612 1.22531 0.85086 0.98175 0.95965 0.92744 0.91576 0.88796 0.88932 0.88731 0.93128 0.87691 0.88819 0.92351 0.90534 0.93823 0.90328 0.90913 0.95055 0.90932 0.83679 0.91998 0.88058 0.77037 0.91302 0.90483 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.82 113.37 1.23 1.45 16 2 O -0.40 -7.92 9.89 -129.99 -1.29 -9.21 16 3 C 0.08 1.10 2.43 29.85 0.07 1.18 16 4 H 0.11 0.91 7.37 -2.39 -0.02 0.89 16 5 C -0.17 -1.52 9.35 71.98 0.67 -0.85 16 6 C 0.52 11.74 7.29 87.66 0.64 12.38 16 7 O -0.58 -19.88 16.78 15.94 0.27 -19.62 16 8 N -0.62 -10.12 3.32 -807.52 -2.68 -12.80 16 9 C 0.10 0.73 4.93 86.53 0.43 1.16 16 10 C -0.10 -0.83 3.31 -9.89 -0.03 -0.86 16 11 H 0.11 0.69 7.71 -2.39 -0.02 0.67 16 12 C -0.14 -1.10 8.90 71.98 0.64 -0.46 16 13 C -0.09 -1.17 2.73 -9.89 -0.03 -1.20 16 14 H 0.08 1.21 7.71 -2.39 -0.02 1.19 16 15 C -0.10 -1.56 4.65 30.60 0.14 -1.42 16 16 C 0.06 1.26 5.54 86.30 0.48 1.74 16 17 N -0.68 -21.19 6.13 -517.94 -3.17 -24.37 16 18 C 0.06 2.24 6.17 85.56 0.53 2.77 16 19 C 0.44 21.20 7.82 87.65 0.69 21.89 16 20 O -0.62 -34.75 15.77 -3.06 -0.05 -34.79 16 21 N -0.57 -30.04 5.29 -306.97 -1.62 -31.66 16 22 C -0.33 -19.29 9.68 84.04 0.81 -18.48 16 23 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 24 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 25 N -0.92 -50.42 13.05 21.66 0.28 -50.14 16 26 Si 1.00 43.30 29.55 68.60 2.03 45.32 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 28 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 29 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 30 C 0.10 1.87 5.80 86.50 0.50 2.37 16 31 H 0.05 0.40 8.08 -2.39 -0.02 0.38 16 32 H 0.07 0.34 7.87 -2.39 -0.02 0.32 16 33 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.09 0.45 7.87 -2.39 -0.02 0.43 16 35 H 0.09 0.46 5.98 -2.39 -0.01 0.45 16 36 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.10 0.29 6.43 -2.38 -0.02 0.28 16 38 H 0.09 0.48 8.07 -2.39 -0.02 0.46 16 39 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 40 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.07 1.12 8.02 -2.39 -0.02 1.10 16 44 H 0.03 0.68 7.53 -2.39 -0.02 0.66 16 45 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 46 H 0.34 11.09 8.43 -89.69 -0.76 10.33 16 47 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 49 H 0.40 19.75 7.90 -92.70 -0.73 19.02 16 50 H 0.28 14.17 8.31 -92.72 -0.77 13.40 16 51 H 0.08 1.34 7.78 -2.39 -0.02 1.32 16 52 H 0.06 1.35 7.89 -2.39 -0.02 1.33 16 Total: -1.00 -80.74 419.39 0.44 -80.30 By element: Atomic # 1 Polarization: 36.15 SS G_CDS: -0.57 Total: 35.58 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: 7.23 Total: 21.37 kcal Atomic # 7 Polarization: -111.77 SS G_CDS: -7.19 Total: -118.96 kcal Atomic # 8 Polarization: -62.55 SS G_CDS: -1.07 Total: -63.62 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -80.74 0.44 -80.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103945937.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.891 kcal (2) G-P(sol) polarization free energy of solvation -80.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds