Wall clock time and date at job start Wed Apr 1 2020 01:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00174 * 2 1 4 4 C 1.50700 * 109.47352 * 180.02562 * 3 2 1 5 5 O 1.21284 * 119.99886 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00459 * 179.97438 * 4 3 2 7 7 C 1.46493 * 120.00351 * 179.97438 * 6 4 3 8 8 H 1.09008 * 109.46998 * 324.99690 * 7 6 4 9 9 C 1.52997 * 109.47468 * 84.99958 * 7 6 4 10 10 C 1.50701 * 109.47091 * 205.00152 * 7 6 4 11 11 O 1.21277 * 120.00262 * 359.97438 * 10 7 6 12 12 N 1.34775 * 119.99972 * 179.97438 * 10 7 6 13 13 C 1.47422 * 125.64792 * 359.95602 * 12 10 7 14 14 C 1.54914 * 104.83142 * 204.16300 * 13 12 10 15 15 H 1.09002 * 111.00272 * 81.06676 * 14 13 12 16 16 C 1.53004 * 111.00725 * 204.91542 * 14 13 12 17 17 C 1.55151 * 101.58213 * 322.99175 * 14 13 12 18 18 H 1.08999 * 110.87407 * 277.06551 * 17 14 13 19 19 C 1.53003 * 110.72070 * 153.86248 * 17 14 13 20 20 C 1.52999 * 109.47240 * 180.02562 * 19 17 14 21 21 N 1.46498 * 109.47072 * 180.02562 * 20 19 17 22 22 C 1.36943 * 119.99727 * 180.02562 * 21 20 19 23 23 H 1.07998 * 120.00392 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99586 * 179.97438 * 22 21 20 25 25 N 1.31618 * 120.00460 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99694 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47297 * 179.97438 * 26 24 22 28 28 H 1.48503 * 109.47261 * 60.00129 * 26 24 22 29 29 H 1.48500 * 109.47454 * 300.00122 * 26 24 22 30 30 C 1.47021 * 125.64821 * 179.97438 * 12 10 7 31 31 H 1.09000 * 109.47317 * 60.00068 * 1 2 3 32 32 H 1.08998 * 109.47250 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46940 * 299.99976 * 1 2 3 34 34 H 1.08990 * 109.47439 * 59.99882 * 3 2 1 35 35 H 1.09002 * 109.47119 * 299.99725 * 3 2 1 36 36 H 0.97004 * 119.99302 * 359.97438 * 6 4 3 37 37 H 1.08997 * 109.47463 * 180.02562 * 9 7 6 38 38 H 1.09005 * 109.46950 * 299.99992 * 9 7 6 39 39 H 1.09000 * 109.47193 * 59.99534 * 9 7 6 40 40 H 1.08996 * 110.37117 * 322.99866 * 13 12 10 41 41 H 1.09002 * 110.37023 * 85.32825 * 13 12 10 42 42 H 1.08996 * 109.47037 * 172.19658 * 16 14 13 43 43 H 1.09006 * 109.46585 * 292.20174 * 16 14 13 44 44 H 1.09001 * 109.46621 * 52.19135 * 16 14 13 45 45 H 1.09009 * 109.46821 * 60.02447 * 19 17 14 46 46 H 1.08994 * 109.47410 * 300.02646 * 19 17 14 47 47 H 1.09000 * 109.46925 * 60.00140 * 20 19 17 48 48 H 1.09007 * 109.47238 * 300.00165 * 20 19 17 49 49 H 0.96998 * 120.00095 * 359.97438 * 21 20 19 50 50 H 0.97001 * 119.99952 * 359.97438 * 25 24 22 51 51 H 1.09001 * 109.88031 * 59.48542 * 30 12 10 52 52 H 1.08999 * 109.88558 * 298.32218 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0341 0.0915 -0.0006 6 7 4.2766 2.2968 -0.0013 7 6 5.7369 2.1811 -0.0013 8 1 6.0327 1.3135 0.5886 9 6 6.2354 2.0147 -1.4382 10 6 6.3394 3.4254 0.5985 11 8 5.6198 4.3209 0.9873 12 7 7.6779 3.5431 0.7029 13 6 8.6651 2.5360 0.2733 14 6 9.9236 2.8239 1.1294 15 1 9.8293 2.3849 2.1227 16 6 11.1892 2.3243 0.4296 17 6 9.9031 4.3736 1.2021 18 1 10.3543 4.8101 0.3111 19 6 10.6152 4.8658 2.4636 20 6 10.5777 6.3948 2.5068 21 7 11.2601 6.8661 3.7144 22 6 11.3524 8.2085 3.9689 23 1 10.9225 8.9197 3.2791 24 6 11.9985 8.6551 5.1134 25 7 12.5228 7.7884 5.9538 26 14 12.1250 10.4862 5.4602 27 1 12.8557 10.6992 6.7354 28 1 10.7617 11.0648 5.5690 29 1 12.8577 11.1504 4.3524 30 6 8.3954 4.6970 1.2644 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.6887 1.8464 0.8899 35 1 1.6887 1.8464 -0.8900 36 1 3.8593 3.1725 -0.0017 37 1 7.3219 1.9282 -1.4382 38 1 5.7996 1.1147 -1.8720 39 1 5.9396 2.8822 -2.0281 40 1 8.2929 1.5310 0.4721 41 1 8.8918 2.6548 -0.7863 42 1 12.0666 2.6599 0.9823 43 1 11.1778 1.2350 0.3923 44 1 11.2245 2.7222 -0.5847 45 1 11.6516 4.5280 2.4511 46 1 10.1131 4.4651 3.3441 47 1 9.5414 6.7325 2.5193 48 1 11.0799 6.7956 1.6262 49 1 11.6458 6.2273 4.3341 50 1 12.4575 6.8375 5.7736 51 1 8.0926 4.8538 2.2997 52 1 8.1827 5.5886 0.6747 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104226856.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:23:38 Heat of formation + Delta-G solvation = -107.314094 kcal Electronic energy + Delta-G solvation = -29940.698461 eV Core-core repulsion = 25747.656803 eV Total energy + Delta-G solvation = -4193.041658 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.96765 -39.94911 -38.45005 -37.76351 -35.45821 -35.29252 -33.65780 -32.23833 -31.69443 -30.02836 -28.94325 -27.18525 -26.73988 -26.34610 -24.83210 -23.58978 -22.54028 -21.03940 -20.83946 -20.34334 -19.76766 -18.21092 -17.43028 -17.28336 -16.80470 -16.75108 -16.34889 -15.82056 -15.77126 -15.17563 -14.84521 -14.76450 -14.56314 -14.22025 -13.94389 -13.75911 -13.62674 -13.49169 -13.38321 -13.13533 -12.94384 -12.83491 -12.64255 -12.45127 -12.33274 -11.98314 -11.94870 -11.81973 -11.58344 -11.33925 -10.82424 -10.78615 -10.54329 -10.49944 -10.35017 -10.30551 -10.24894 -10.13875 -9.96044 -9.58473 -9.15102 -8.91245 -8.86895 -6.99506 -6.09673 -3.09069 2.10734 2.18376 2.29192 2.78175 3.52422 3.56290 3.58807 3.73623 3.94488 4.20796 4.26748 4.44700 4.53080 4.57014 4.63029 4.66203 4.70189 4.72546 4.84241 4.88941 4.94793 5.09415 5.12142 5.18647 5.19810 5.23654 5.31871 5.37438 5.44689 5.59259 5.63577 5.65192 5.69057 5.76402 5.84063 5.90091 5.91410 5.93763 6.03798 6.16436 6.18487 6.28260 6.45543 6.73807 6.78021 7.04403 7.18255 7.74333 7.80579 7.81919 8.76913 9.24457 10.10759 10.25488 11.39075 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016011 B = 0.001874 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.323440 B =14935.328079 C =16142.682400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.518 3.482 5 O -0.519 6.519 6 N -0.713 5.713 7 C 0.132 3.868 8 H 0.115 0.885 9 C -0.166 4.166 10 C 0.524 3.476 11 O -0.535 6.535 12 N -0.610 5.610 13 C 0.097 3.903 14 C -0.102 4.102 15 H 0.088 0.912 16 C -0.141 4.141 17 C -0.089 4.089 18 H 0.088 0.912 19 C -0.116 4.116 20 C 0.157 3.843 21 N -0.745 5.745 22 C -0.332 4.332 23 H 0.064 0.936 24 C -0.046 4.046 25 N -0.944 5.944 26 Si 1.080 2.920 27 H -0.285 1.285 28 H -0.295 1.295 29 H -0.295 1.295 30 C 0.112 3.888 31 H 0.044 0.956 32 H 0.092 0.908 33 H 0.045 0.955 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.411 0.589 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.020 0.980 48 H 0.019 0.981 49 H 0.366 0.634 50 H 0.254 0.746 51 H 0.076 0.924 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.887 -16.806 -18.099 30.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.036 4.036 4 C 0.304 3.696 5 O -0.393 6.393 6 N -0.369 5.369 7 C 0.024 3.976 8 H 0.132 0.868 9 C -0.225 4.225 10 C 0.312 3.688 11 O -0.412 6.412 12 N -0.344 5.344 13 C -0.026 4.026 14 C -0.121 4.121 15 H 0.107 0.893 16 C -0.198 4.198 17 C -0.108 4.108 18 H 0.106 0.894 19 C -0.154 4.154 20 C 0.029 3.971 21 N -0.391 5.391 22 C -0.463 4.463 23 H 0.082 0.918 24 C -0.244 4.244 25 N -0.590 5.590 26 Si 0.911 3.089 27 H -0.210 1.210 28 H -0.223 1.223 29 H -0.223 1.223 30 C -0.010 4.010 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.248 0.752 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.038 0.962 48 H 0.037 0.963 49 H 0.199 0.801 50 H 0.065 0.935 51 H 0.094 0.906 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.413 -15.988 -16.975 29.102 hybrid contribution -0.924 -0.571 -0.921 1.424 sum -18.336 -16.559 -17.896 30.507 Atomic orbital electron populations 1.22859 0.80112 1.03452 1.00277 1.88008 1.19988 1.25029 1.95469 1.22194 0.91110 0.87184 1.03075 1.20251 0.88828 0.84246 0.76297 1.90740 1.74529 1.26365 1.47713 1.45620 1.05397 1.09846 1.76010 1.20668 0.81061 0.97205 0.98682 0.86764 1.22274 1.02586 1.03495 0.94122 1.20165 0.81116 0.88468 0.79096 1.90725 1.59441 1.41648 1.49420 1.48396 1.04575 1.20264 1.61153 1.22660 0.88745 0.92184 0.98985 1.22458 0.94013 0.95868 0.99798 0.89340 1.21702 0.96726 1.00926 1.00493 1.22281 0.93695 0.94556 1.00269 0.89389 1.21750 1.00378 0.97591 0.95706 1.20620 0.95576 0.90524 0.90365 1.42369 1.68141 1.04901 1.23666 1.20043 1.34744 0.83520 1.07973 0.91795 1.25789 0.98123 1.06940 0.93516 1.70885 1.47859 1.02173 1.38093 0.83239 0.75874 0.73818 0.75963 1.21002 1.22268 1.22258 1.22166 0.91035 0.88057 0.99764 0.93705 0.88965 0.93641 0.89808 0.89948 0.75199 0.90227 0.90637 0.91655 0.90295 0.90513 0.91542 0.92321 0.92294 0.91321 0.91774 0.96239 0.96346 0.80072 0.93456 0.90565 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.37 -3.49 10.24 -55.14 -0.56 -4.06 16 3 C 0.04 0.32 6.42 36.01 0.23 0.55 16 4 C 0.52 5.26 7.87 -10.99 -0.09 5.18 16 5 O -0.52 -7.30 16.16 -14.35 -0.23 -7.53 16 6 N -0.71 -6.41 4.95 -54.93 -0.27 -6.69 16 7 C 0.13 1.24 2.33 -69.09 -0.16 1.08 16 8 H 0.11 1.13 7.28 -51.92 -0.38 0.75 16 9 C -0.17 -1.23 9.29 37.16 0.35 -0.88 16 10 C 0.52 6.18 7.28 -10.99 -0.08 6.10 16 11 O -0.54 -8.07 16.16 5.56 0.09 -7.98 16 12 N -0.61 -6.61 3.32 -170.52 -0.57 -7.18 16 13 C 0.10 0.76 4.60 -2.53 -0.01 0.75 16 14 C -0.10 -0.90 3.09 -88.47 -0.27 -1.18 16 15 H 0.09 0.84 8.05 -51.93 -0.42 0.42 16 16 C -0.14 -1.04 9.31 37.16 0.35 -0.70 16 17 C -0.09 -1.00 2.45 -88.79 -0.22 -1.22 16 18 H 0.09 0.95 8.04 -51.93 -0.42 0.53 16 19 C -0.12 -1.73 4.72 -26.73 -0.13 -1.85 16 20 C 0.16 3.12 6.11 -4.04 -0.02 3.09 16 21 N -0.75 -19.08 5.60 -59.91 -0.34 -19.42 16 22 C -0.33 -9.59 9.99 -15.06 -0.15 -9.74 16 23 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 24 C -0.05 -1.37 5.50 -17.43 -0.10 -1.47 16 25 N -0.94 -29.57 13.70 55.49 0.76 -28.81 16 26 Si 1.08 26.28 29.92 -169.99 -5.09 21.20 16 27 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.30 -6.89 7.11 56.52 0.40 -6.48 16 29 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16 30 C 0.11 1.41 5.61 -3.06 -0.02 1.39 16 31 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.41 3.25 7.79 -40.82 -0.32 2.93 16 37 H 0.08 0.48 5.00 -51.93 -0.26 0.22 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.52 7.36 -51.93 -0.38 0.14 16 41 H 0.08 0.49 6.92 -51.93 -0.36 0.13 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.40 8.07 -51.93 -0.42 -0.02 16 45 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 46 H 0.06 0.99 8.06 -51.93 -0.42 0.57 16 47 H 0.02 0.40 7.49 -51.93 -0.39 0.02 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.37 9.51 6.50 -40.82 -0.27 9.25 16 50 H 0.25 7.82 6.77 -40.82 -0.28 7.54 16 51 H 0.08 1.12 7.76 -51.93 -0.40 0.72 16 52 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 417.58 15.07 6.29 6.29 Total: -1.00 -37.77 417.58 -8.11 -45.87 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -8.98 Total: 5.92 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 0.79 Total: 2.38 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: -0.41 Total: -62.09 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.71 Total: -19.57 kcal Atomic # 14 Polarization: 26.28 SS G_CDS: -5.09 Total: 21.20 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -37.77 -8.11 -45.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104226856.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.441 kcal (2) G-P(sol) polarization free energy of solvation -37.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds