Wall clock time and date at job start Wed Apr 1 2020 01:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 114.00012 * 2 1 4 4 C 1.50703 * 109.46748 * 180.02562 * 3 2 1 5 5 O 1.21278 * 120.00247 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99583 * 180.02562 * 4 3 2 7 7 C 1.46500 * 120.00126 * 359.97438 * 6 4 3 8 8 C 1.46505 * 119.99834 * 179.97438 * 6 4 3 9 9 C 1.50701 * 109.46903 * 89.99802 * 8 6 4 10 10 O 1.21281 * 120.00382 * 0.02562 * 9 8 6 11 11 N 1.34774 * 120.00149 * 180.02562 * 9 8 6 12 12 C 1.47431 * 125.64341 * 0.03974 * 11 9 8 13 13 C 1.54912 * 104.82949 * 204.09147 * 12 11 9 14 14 H 1.09000 * 111.00254 * 81.07017 * 13 12 11 15 15 C 1.53004 * 111.00695 * 204.91801 * 13 12 11 16 16 C 1.55156 * 101.58604 * 322.99608 * 13 12 11 17 17 H 1.09000 * 110.86864 * 277.06858 * 16 13 12 18 18 C 1.52992 * 110.72497 * 153.86469 * 16 13 12 19 19 C 1.52997 * 109.47482 * 180.02562 * 18 16 13 20 20 N 1.46505 * 109.47212 * 179.97438 * 19 18 16 21 21 C 1.36936 * 119.99992 * 179.97438 * 20 19 18 22 22 H 1.08006 * 119.99834 * 0.02562 * 21 20 19 23 23 C 1.38801 * 120.00093 * 180.02562 * 21 20 19 24 24 N 1.31619 * 120.00176 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00265 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46968 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47299 * 119.99957 * 25 23 21 28 28 H 1.48495 * 109.47075 * 240.00117 * 25 23 21 29 29 C 1.47023 * 125.65069 * 180.02562 * 11 9 8 30 30 H 1.08999 * 109.46903 * 59.99508 * 1 2 3 31 31 H 1.08994 * 109.47168 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46795 * 299.99845 * 1 2 3 33 33 H 1.08995 * 109.47115 * 60.00501 * 3 2 1 34 34 H 1.08993 * 109.47137 * 299.99732 * 3 2 1 35 35 H 1.08997 * 109.47012 * 269.99963 * 7 6 4 36 36 H 1.08997 * 109.46836 * 30.00162 * 7 6 4 37 37 H 1.09001 * 109.46968 * 150.00453 * 7 6 4 38 38 H 1.08998 * 109.46940 * 330.00206 * 8 6 4 39 39 H 1.08998 * 109.47129 * 209.99598 * 8 6 4 40 40 H 1.08992 * 110.37314 * 322.93281 * 12 11 9 41 41 H 1.09008 * 110.36286 * 85.14824 * 12 11 9 42 42 H 1.08997 * 109.47132 * 172.19914 * 15 13 12 43 43 H 1.09005 * 109.47105 * 292.20409 * 15 13 12 44 44 H 1.09001 * 109.46710 * 52.19730 * 15 13 12 45 45 H 1.09002 * 109.47103 * 60.02094 * 18 16 13 46 46 H 1.08998 * 109.46862 * 300.02906 * 18 16 13 47 47 H 1.09002 * 109.47153 * 59.99783 * 19 18 16 48 48 H 1.09001 * 109.46832 * 299.99974 * 19 18 16 49 49 H 0.96996 * 119.99606 * 0.02562 * 20 19 18 50 50 H 0.97001 * 120.00803 * 179.97438 * 24 23 21 51 51 H 1.08996 * 109.87920 * 59.56468 * 29 11 9 52 52 H 1.08996 * 109.88311 * 298.39002 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 8 4.0341 0.0914 -0.0006 6 7 4.2766 2.2967 -0.0002 7 6 3.6465 3.6193 0.0003 8 6 5.7370 2.1810 -0.0003 9 6 6.2377 2.1418 -1.4211 10 8 5.4521 2.2049 -2.3430 11 7 7.5586 2.0367 -1.6675 12 6 8.6188 1.9509 -0.6467 13 6 9.8962 2.4631 -1.3578 14 1 9.9251 3.5526 -1.3723 15 6 11.1553 1.8921 -0.7021 16 6 9.7066 1.8927 -2.7882 17 1 10.0391 0.8559 -2.8400 18 6 10.4493 2.7492 -3.8155 19 6 10.2429 2.1626 -5.2134 20 7 10.9536 2.9833 -6.1972 21 6 10.9131 2.6494 -7.5246 22 1 10.3569 1.7812 -7.8463 23 6 11.5869 3.4265 -8.4566 24 7 12.2652 4.4841 -8.0645 25 14 11.5311 2.9715 -10.2675 26 1 10.7068 1.7491 -10.4455 27 1 10.9318 4.0888 -11.0405 28 1 12.9097 2.7150 -10.7561 29 6 8.1807 1.9884 -2.9988 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8463 -0.8899 35 1 3.4903 3.9477 -1.0272 36 1 2.6869 3.5644 0.5141 37 1 4.2938 4.3299 0.5143 38 1 6.0289 1.2649 0.5132 39 1 6.1695 3.0393 0.5138 40 1 8.3779 2.5870 0.2050 41 1 8.7509 0.9185 -0.3229 42 1 12.0274 2.1537 -1.3012 43 1 11.2641 2.3085 0.2994 44 1 11.0710 0.8073 -0.6374 45 1 11.5133 2.7592 -3.5790 46 1 10.0615 3.7675 -3.7878 47 1 9.1789 2.1527 -5.4498 48 1 10.6307 1.1443 -5.2410 49 1 11.4534 3.7627 -5.9081 50 1 12.7364 5.0271 -8.7157 51 1 7.9392 2.8947 -3.5539 52 1 7.8261 1.1126 -3.5421 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104258153.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:23:45 Heat of formation + Delta-G solvation = -96.932701 kcal Electronic energy + Delta-G solvation = -30026.369038 eV Core-core repulsion = 25833.777551 eV Total energy + Delta-G solvation = -4192.591487 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.74720 -39.85751 -38.23968 -37.60281 -35.72162 -35.13217 -33.33293 -32.06277 -30.81507 -30.02499 -28.56599 -27.20192 -26.69183 -26.54352 -25.52448 -24.00346 -22.45909 -20.83493 -20.48077 -19.90472 -19.20652 -17.80572 -17.51203 -17.17055 -17.02808 -16.59173 -16.39066 -15.94791 -15.34761 -15.00317 -14.82027 -14.66529 -14.41581 -14.16289 -13.79330 -13.53258 -13.36033 -13.30680 -13.25818 -13.08476 -12.92160 -12.72908 -12.69604 -12.61390 -12.28451 -12.13332 -11.84873 -11.72938 -11.44595 -11.15111 -11.02400 -10.83742 -10.59971 -10.43381 -10.26239 -10.25651 -10.21229 -10.10228 -9.92446 -9.64108 -9.04895 -8.84201 -8.72103 -6.88475 -5.73656 -3.01942 2.08331 2.33547 2.50693 2.94012 3.45893 3.48696 3.51703 3.54029 4.15014 4.21809 4.32509 4.47902 4.53619 4.64374 4.66379 4.70587 4.74099 4.76615 4.88151 4.94247 4.98171 5.04961 5.12794 5.20290 5.24544 5.25809 5.30980 5.33573 5.50156 5.55282 5.61654 5.73277 5.79924 5.82452 5.89796 6.01143 6.01744 6.10675 6.18043 6.31407 6.39857 6.41699 6.51828 6.87301 6.88629 6.91468 7.39278 7.74316 7.79075 8.05324 8.45628 9.56690 10.15024 10.49586 11.49443 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013092 B = 0.002021 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.178190 B =13849.204557 C =15268.097118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.048 3.952 4 C 0.521 3.479 5 O -0.514 6.514 6 N -0.601 5.601 7 C 0.076 3.924 8 C 0.104 3.896 9 C 0.510 3.490 10 O -0.530 6.530 11 N -0.617 5.617 12 C 0.100 3.900 13 C -0.101 4.101 14 H 0.087 0.913 15 C -0.141 4.141 16 C -0.089 4.089 17 H 0.086 0.914 18 C -0.114 4.114 19 C 0.150 3.850 20 N -0.734 5.734 21 C -0.237 4.237 22 H 0.071 0.929 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.907 3.093 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 C 0.112 3.888 30 H 0.045 0.955 31 H 0.092 0.908 32 H 0.043 0.957 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.114 0.886 39 H 0.109 0.891 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.019 0.981 48 H 0.018 0.982 49 H 0.383 0.617 50 H 0.254 0.746 51 H 0.074 0.926 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.692 -1.770 26.866 32.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.032 4.032 4 C 0.308 3.692 5 O -0.387 6.387 6 N -0.337 5.337 7 C -0.067 4.067 8 C -0.022 4.022 9 C 0.296 3.704 10 O -0.406 6.406 11 N -0.352 5.352 12 C -0.023 4.023 13 C -0.120 4.120 14 H 0.106 0.894 15 C -0.198 4.198 16 C -0.109 4.109 17 H 0.105 0.895 18 C -0.152 4.152 19 C 0.023 3.977 20 N -0.378 5.378 21 C -0.368 4.368 22 H 0.089 0.911 23 C -0.212 4.212 24 N -0.584 5.584 25 Si 0.738 3.262 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.010 4.010 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.132 0.868 39 H 0.127 0.873 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.037 0.963 48 H 0.036 0.964 49 H 0.216 0.784 50 H 0.064 0.936 51 H 0.093 0.907 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.908 -2.606 26.229 31.866 hybrid contribution 0.013 0.473 -1.061 1.162 sum -17.894 -2.132 25.168 30.955 Atomic orbital electron populations 1.22850 0.80192 1.03459 1.00155 1.88023 1.19927 1.25152 1.95417 1.22245 0.91274 0.87078 1.02618 1.20239 0.88865 0.83971 0.76105 1.90737 1.74423 1.26154 1.47409 1.47310 1.05166 1.06793 1.74387 1.21927 0.98553 0.83263 1.02948 1.21289 0.80835 1.05607 0.94510 1.20778 0.80830 0.76766 0.92001 1.90723 1.54279 1.49425 1.46193 1.48537 1.05192 1.72787 1.08725 1.22497 0.87180 1.01324 0.91259 1.22424 0.93738 1.01050 0.94764 0.89417 1.21702 0.96900 1.00925 1.00311 1.22290 0.93365 1.00924 0.94303 0.89520 1.21721 1.00136 0.98776 0.94580 1.20691 0.95455 0.94138 0.87424 1.42367 1.60487 1.31809 1.03132 1.19300 1.25592 1.08345 0.83567 0.91138 1.24741 1.00549 0.97806 0.98092 1.69669 1.37503 1.18175 1.33026 0.86111 0.77157 0.77508 0.85428 1.20540 1.21882 1.21878 1.22118 0.92268 1.02791 0.83809 0.93655 0.88976 0.93804 0.90166 0.89857 0.91580 0.90770 0.90504 0.86813 0.87300 0.90788 0.90947 0.91537 0.92493 0.92328 0.91286 0.91733 0.96306 0.96411 0.78356 0.93628 0.90735 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.37 -4.01 10.24 -55.14 -0.56 -4.58 16 3 C 0.05 0.40 4.97 36.01 0.18 0.58 16 4 C 0.52 6.22 7.75 -10.98 -0.09 6.13 16 5 O -0.51 -8.46 16.08 -14.35 -0.23 -8.69 16 6 N -0.60 -5.66 2.36 -182.95 -0.43 -6.09 16 7 C 0.08 0.41 10.29 59.85 0.62 1.03 16 8 C 0.10 0.96 4.94 -5.19 -0.03 0.93 16 9 C 0.51 6.81 7.92 -10.99 -0.09 6.72 16 10 O -0.53 -9.40 16.76 5.56 0.09 -9.31 16 11 N -0.62 -7.49 3.33 -170.51 -0.57 -8.06 16 12 C 0.10 0.85 6.16 -2.52 -0.02 0.83 16 13 C -0.10 -0.93 3.09 -88.47 -0.27 -1.20 16 14 H 0.09 0.83 8.05 -51.93 -0.42 0.41 16 15 C -0.14 -1.10 9.31 37.16 0.35 -0.76 16 16 C -0.09 -1.09 2.45 -88.79 -0.22 -1.31 16 17 H 0.09 1.04 8.04 -51.93 -0.42 0.63 16 18 C -0.11 -1.76 4.71 -26.74 -0.13 -1.89 16 19 C 0.15 3.07 6.11 -4.04 -0.02 3.04 16 20 N -0.73 -19.07 5.60 -59.91 -0.34 -19.41 16 21 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 22 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 23 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 24 N -0.93 -28.76 13.06 55.49 0.72 -28.03 16 25 Si 0.91 22.97 29.55 -169.99 -5.02 17.95 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 28 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 29 C 0.11 1.57 5.61 -3.06 -0.02 1.55 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.08 0.39 7.40 -51.93 -0.38 0.01 16 34 H 0.08 0.58 8.11 -51.93 -0.42 0.16 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.21 6.44 -51.93 -0.33 -0.13 16 37 H 0.08 0.26 7.89 -51.93 -0.41 -0.15 16 38 H 0.11 1.06 7.42 -51.93 -0.39 0.67 16 39 H 0.11 0.59 7.60 -51.93 -0.39 0.19 16 40 H 0.07 0.43 7.48 -51.93 -0.39 0.04 16 41 H 0.07 0.57 7.99 -51.92 -0.41 0.15 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 45 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.06 1.03 8.06 -51.93 -0.42 0.61 16 47 H 0.02 0.40 7.49 -51.93 -0.39 0.01 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.38 10.35 7.67 -40.82 -0.31 10.03 16 50 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 51 H 0.07 1.17 7.76 -51.93 -0.40 0.77 16 52 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 422.98 15.07 6.37 6.37 Total: -1.00 -39.68 422.98 -8.09 -47.77 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -9.26 Total: 2.69 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 1.13 Total: 9.39 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: -0.61 Total: -61.59 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.70 Total: -22.58 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -39.68 -8.09 -47.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104258153.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.164 kcal (2) G-P(sol) polarization free energy of solvation -39.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds