Wall clock time and date at job start Wed Apr 1 2020 01:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46950 * 2 1 4 4 O 1.42896 * 109.47211 * 120.00630 * 2 1 3 5 5 C 1.42901 * 113.99813 * 150.00462 * 4 2 1 6 6 C 1.50704 * 109.46651 * 179.97438 * 5 4 2 7 7 O 1.21275 * 120.00263 * 0.02562 * 6 5 4 8 8 N 1.34784 * 119.99481 * 179.97438 * 6 5 4 9 9 C 1.47027 * 125.64406 * 179.97438 * 8 6 5 10 10 C 1.54321 * 107.26617 * 178.90815 * 9 8 6 11 11 H 1.09005 * 110.72064 * 96.35188 * 10 9 8 12 12 C 1.53006 * 110.71843 * 219.44610 * 10 9 8 13 13 N 1.46901 * 109.47014 * 293.54624 * 12 10 9 14 14 C 1.46902 * 110.99983 * 179.97438 * 13 12 10 15 15 C 1.50696 * 109.46978 * 180.02562 * 14 13 12 16 16 O 1.21295 * 120.00238 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00076 * 180.02562 * 15 14 13 18 18 C 1.37105 * 120.00244 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99708 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00017 * 179.97438 * 18 17 15 21 21 N 1.31413 * 119.99901 * 359.71836 * 20 18 17 22 22 Si 1.86800 * 120.00194 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72210 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72333 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72143 * 22 20 18 26 26 C 1.55151 * 102.94663 * 337.80988 * 10 9 8 27 27 H 1.09005 * 111.00606 * 277.42945 * 26 10 9 28 28 C 1.53003 * 111.00683 * 153.57675 * 26 10 9 29 29 C 1.47421 * 125.64984 * 359.96412 * 8 6 5 30 30 H 1.09003 * 109.46919 * 299.99226 * 1 2 3 31 31 H 1.08996 * 109.47730 * 59.99759 * 1 2 3 32 32 H 1.09000 * 109.46807 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46919 * 240.00774 * 2 1 3 34 34 H 1.09003 * 109.46677 * 60.00626 * 3 2 1 35 35 H 1.08993 * 109.47112 * 180.02562 * 3 2 1 36 36 H 1.08996 * 109.47101 * 300.00626 * 3 2 1 37 37 H 1.08994 * 109.47353 * 59.99791 * 5 4 2 38 38 H 1.08998 * 109.46550 * 299.98987 * 5 4 2 39 39 H 1.09002 * 109.87786 * 59.49172 * 9 8 6 40 40 H 1.08997 * 110.01531 * 298.40139 * 9 8 6 41 41 H 1.09002 * 109.47001 * 173.54915 * 12 10 9 42 42 H 1.08992 * 109.47083 * 53.54606 * 12 10 9 43 43 H 1.00903 * 110.99970 * 303.95843 * 13 12 10 44 44 H 1.08999 * 109.46697 * 60.00741 * 14 13 12 45 45 H 1.08993 * 109.47253 * 300.00391 * 14 13 12 46 46 H 0.97004 * 119.99652 * 359.97438 * 17 15 14 47 47 H 0.97000 * 120.00371 * 0.28325 * 21 20 18 48 48 H 1.08998 * 109.46842 * 59.99987 * 28 26 10 49 49 H 1.09002 * 109.46908 * 180.02562 * 28 26 10 50 50 H 1.08998 * 109.46552 * 300.00190 * 28 26 10 51 51 H 1.08998 * 110.36629 * 322.99596 * 29 8 6 52 52 H 1.08997 * 110.36491 * 85.21098 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2661 -1.3245 0.9884 6 6 3.6699 -1.9979 2.2747 7 8 2.9498 -1.9279 3.2479 8 7 4.8311 -2.6789 2.3430 9 6 5.3451 -3.3793 3.5292 10 6 6.6846 -4.0336 3.1302 11 1 7.5238 -3.3996 3.4164 12 6 6.8178 -5.4216 3.7600 13 7 6.9205 -5.2893 5.2194 14 6 7.0496 -6.6051 5.8596 15 6 7.1515 -6.4295 7.3528 16 8 7.1203 -5.3174 7.8362 17 7 7.2785 -7.5079 8.1511 18 6 7.3707 -7.3482 9.5097 19 1 7.3421 -6.3581 9.9401 20 6 7.5010 -8.4600 10.3327 21 7 7.5303 -9.6651 9.8093 22 14 7.6275 -8.2424 12.1837 23 1 7.7511 -9.5730 12.8313 24 1 8.8231 -7.4223 12.5051 25 1 6.4087 -7.5587 12.6860 26 6 6.5733 -4.1397 1.5863 27 1 6.0075 -5.0248 1.2952 28 6 7.9579 -4.1382 0.9352 29 6 5.7960 -2.8448 1.2409 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.6767 1.9563 0.8901 35 1 3.1299 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 4.0200 -0.5873 0.7123 38 1 3.1809 -2.0706 0.1984 39 1 4.6367 -4.1462 3.8426 40 1 5.5062 -2.6698 4.3408 41 1 7.7130 -5.9105 3.3756 42 1 5.9415 -6.0196 3.5102 43 1 7.6879 -4.6857 5.4747 44 1 7.9462 -7.1026 5.4899 45 1 6.1746 -7.2110 5.6243 46 1 7.3038 -8.3972 7.7645 47 1 7.4650 -9.7782 8.8482 48 1 8.5334 -4.9875 1.3033 49 1 7.8506 -4.2131 -0.1469 50 1 8.4759 -3.2124 1.1855 51 1 5.2720 -2.9586 0.2919 52 1 6.4743 -1.9927 1.1991 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105901272.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:24:53 Heat of formation + Delta-G solvation = -122.827193 kcal Electronic energy + Delta-G solvation = -29485.449616 eV Core-core repulsion = 25291.735259 eV Total energy + Delta-G solvation = -4193.714356 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.48831 -38.98259 -38.37958 -37.74040 -35.50037 -34.18629 -33.23938 -33.06779 -31.16077 -30.71626 -28.61487 -27.62254 -26.77705 -26.51307 -24.67621 -23.50323 -21.78412 -21.74053 -20.58434 -19.69823 -19.56690 -17.88692 -17.51210 -17.11771 -16.86479 -16.40237 -15.96974 -15.57886 -15.33741 -14.94859 -14.92756 -14.33473 -14.21105 -14.01838 -13.85432 -13.71886 -13.59140 -13.28889 -13.16377 -13.00400 -12.76487 -12.69257 -12.58047 -12.52169 -12.22263 -12.08515 -11.83921 -11.79033 -11.66687 -11.20191 -11.16948 -11.10802 -10.94365 -10.91539 -10.83775 -10.18531 -10.07327 -9.91419 -9.84426 -9.52423 -8.84245 -8.51164 -8.13133 -8.00849 -6.73372 -3.86367 2.40357 2.42547 3.33263 3.37115 3.47207 3.57368 3.85628 3.90906 4.09213 4.16135 4.32013 4.40584 4.52681 4.55351 4.63353 4.66700 4.73251 4.80539 4.92275 4.97202 4.99598 5.01441 5.12365 5.17087 5.20477 5.26513 5.27190 5.30586 5.36487 5.42241 5.47045 5.53734 5.62361 5.67770 5.73492 5.75782 5.80272 5.83115 5.86369 5.97441 6.01891 6.05224 6.13188 6.73696 7.08730 7.27005 7.56569 7.83064 7.99587 8.10342 8.62228 8.82157 9.49740 9.90024 10.70120 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016261 B = 0.001756 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.508885 B =15945.344504 C =17191.489426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.177 4.177 4 O -0.357 6.357 5 C 0.051 3.949 6 C 0.525 3.475 7 O -0.512 6.512 8 N -0.622 5.622 9 C 0.124 3.876 10 C -0.091 4.091 11 H 0.087 0.913 12 C 0.070 3.930 13 N -0.668 5.668 14 C 0.052 3.948 15 C 0.443 3.557 16 O -0.575 6.575 17 N -0.576 5.576 18 C -0.382 4.382 19 H 0.099 0.901 20 C -0.010 4.010 21 N -0.902 5.902 22 Si 1.091 2.909 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.100 4.100 27 H 0.089 0.911 28 C -0.141 4.141 29 C 0.101 3.899 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.033 0.967 42 H 0.074 0.926 43 H 0.350 0.650 44 H 0.042 0.958 45 H 0.085 0.915 46 H 0.375 0.625 47 H 0.261 0.739 48 H 0.063 0.937 49 H 0.058 0.942 50 H 0.059 0.941 51 H 0.074 0.926 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.833 14.183 -28.750 32.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 C -0.234 4.234 4 O -0.276 6.276 5 C -0.029 4.029 6 C 0.312 3.688 7 O -0.386 6.386 8 N -0.359 5.359 9 C 0.002 3.998 10 C -0.110 4.110 11 H 0.106 0.894 12 C -0.060 4.060 13 N -0.301 5.301 14 C -0.081 4.081 15 C 0.229 3.771 16 O -0.459 6.459 17 N -0.214 5.214 18 C -0.511 4.511 19 H 0.117 0.883 20 C -0.212 4.212 21 N -0.541 5.541 22 Si 0.917 3.083 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.120 4.120 27 H 0.107 0.893 28 C -0.199 4.199 29 C -0.022 4.022 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.051 0.949 42 H 0.092 0.908 43 H 0.169 0.831 44 H 0.060 0.940 45 H 0.103 0.897 46 H 0.208 0.792 47 H 0.072 0.928 48 H 0.082 0.918 49 H 0.078 0.922 50 H 0.078 0.922 51 H 0.093 0.907 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.983 14.244 -26.133 30.177 hybrid contribution 1.010 0.039 -2.323 2.533 sum -3.973 14.283 -28.455 32.086 Atomic orbital electron populations 1.21857 0.93172 1.02996 1.02704 1.22181 0.95456 0.92481 0.87747 1.22318 1.01467 0.96723 1.02896 1.88085 1.34535 1.69668 1.35277 1.22184 0.88168 0.96885 0.95686 1.19868 0.80059 0.79001 0.89832 1.90778 1.50884 1.59261 1.37703 1.48481 1.19971 1.53203 1.14231 1.21924 0.94484 0.96385 0.86988 1.22303 0.97677 0.97201 0.93856 0.89438 1.21956 1.00724 0.95110 0.88225 1.60045 1.51834 1.12361 1.05857 1.21655 1.00801 0.91302 0.94336 1.19734 0.84425 0.85526 0.87455 1.90536 1.54974 1.24502 1.75848 1.41936 1.65196 1.06938 1.07367 1.20541 1.51391 0.97639 0.81561 0.88326 1.26507 0.95538 0.91322 1.07820 1.70903 1.47256 1.22357 1.13570 0.83131 0.77061 0.75898 0.72169 1.20428 1.21044 1.20976 1.22395 0.97035 0.97614 0.94922 0.89311 1.21718 0.95173 1.02630 1.00392 1.22458 0.91448 0.98054 0.90219 0.91480 0.91113 0.91828 0.92115 0.91454 0.92536 0.91474 0.90532 0.90491 0.90494 0.90719 0.94866 0.90800 0.83060 0.93955 0.89667 0.79174 0.92809 0.91807 0.92244 0.92185 0.90738 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.56 37.16 0.36 -0.64 16 2 C 0.08 0.58 3.34 -26.73 -0.09 0.49 16 3 C -0.18 -1.09 9.53 37.16 0.35 -0.73 16 4 O -0.36 -4.01 9.52 -55.14 -0.52 -4.54 16 5 C 0.05 0.45 5.23 36.01 0.19 0.64 16 6 C 0.53 6.82 7.93 -10.98 -0.09 6.74 16 7 O -0.51 -9.40 16.83 -14.35 -0.24 -9.64 16 8 N -0.62 -6.70 3.33 -170.51 -0.57 -7.27 16 9 C 0.12 1.53 6.28 -3.06 -0.02 1.52 16 10 C -0.09 -0.86 2.60 -88.79 -0.23 -1.09 16 11 H 0.09 0.81 8.04 -51.93 -0.42 0.39 16 12 C 0.07 0.77 5.00 -3.82 -0.02 0.75 16 13 N -0.67 -10.37 5.93 -115.06 -0.68 -11.06 16 14 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 15 C 0.44 10.57 7.82 -10.99 -0.09 10.49 16 16 O -0.58 -15.96 15.78 5.54 0.09 -15.88 16 17 N -0.58 -14.68 5.28 -10.96 -0.06 -14.74 16 18 C -0.38 -10.92 9.68 -14.93 -0.14 -11.06 16 19 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 20 C -0.01 -0.26 5.50 -17.47 -0.10 -0.36 16 21 N -0.90 -25.50 13.68 55.50 0.76 -24.74 16 22 Si 1.09 24.65 29.92 -169.99 -5.09 19.56 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 C -0.10 -0.66 3.09 -88.46 -0.27 -0.93 16 27 H 0.09 0.59 8.05 -51.93 -0.42 0.17 16 28 C -0.14 -0.72 9.31 37.16 0.35 -0.37 16 29 C 0.10 0.66 6.16 -2.52 -0.02 0.65 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.32 7.79 -51.93 -0.40 -0.08 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.33 7.87 -51.93 -0.41 -0.08 16 36 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.08 0.50 7.87 -51.93 -0.41 0.09 16 38 H 0.08 0.49 7.79 -51.93 -0.40 0.08 16 39 H 0.08 1.12 7.77 -51.93 -0.40 0.71 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 43 H 0.35 5.59 8.43 -39.29 -0.33 5.26 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.38 8.79 6.73 -40.82 -0.27 8.52 16 47 H 0.26 7.07 6.78 -40.82 -0.28 6.80 16 48 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 50 H 0.06 0.30 8.07 -51.93 -0.42 -0.12 16 51 H 0.07 0.33 7.47 -51.93 -0.39 -0.05 16 52 H 0.07 0.40 7.99 -51.93 -0.41 -0.02 16 LS Contribution 424.23 15.07 6.39 6.39 Total: -1.00 -37.30 424.23 -8.98 -46.28 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -9.21 Total: 8.68 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 0.15 Total: 6.94 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: -0.55 Total: -57.80 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.68 Total: -30.06 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.09 Total: 19.56 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -37.30 -8.98 -46.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105901272.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.545 kcal (2) G-P(sol) polarization free energy of solvation -37.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds