Wall clock time and date at job start Wed Apr 1 2020 01:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46950 * 2 1 4 4 O 1.42896 * 109.47211 * 120.00630 * 2 1 3 5 5 C 1.42901 * 113.99813 * 150.00462 * 4 2 1 6 6 C 1.50704 * 109.46651 * 179.97438 * 5 4 2 7 7 O 1.21275 * 120.00263 * 0.02562 * 6 5 4 8 8 N 1.34784 * 119.99481 * 179.97438 * 6 5 4 9 9 C 1.47027 * 125.64406 * 179.97438 * 8 6 5 10 10 C 1.54321 * 107.26617 * 178.90815 * 9 8 6 11 11 H 1.09005 * 110.72064 * 96.35188 * 10 9 8 12 12 C 1.53006 * 110.71843 * 219.44610 * 10 9 8 13 13 N 1.46901 * 109.47014 * 293.54624 * 12 10 9 14 14 C 1.46902 * 110.99983 * 179.97438 * 13 12 10 15 15 C 1.50696 * 109.46978 * 180.02562 * 14 13 12 16 16 O 1.21295 * 120.00238 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00076 * 180.02562 * 15 14 13 18 18 C 1.37105 * 120.00244 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99708 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00017 * 179.97438 * 18 17 15 21 21 N 1.31413 * 119.99901 * 359.71836 * 20 18 17 22 22 Si 1.86800 * 120.00194 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72210 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72333 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72143 * 22 20 18 26 26 C 1.55151 * 102.94663 * 337.80988 * 10 9 8 27 27 H 1.09005 * 111.00606 * 277.42945 * 26 10 9 28 28 C 1.53003 * 111.00683 * 153.57675 * 26 10 9 29 29 C 1.47421 * 125.64984 * 359.96412 * 8 6 5 30 30 H 1.09003 * 109.46919 * 299.99226 * 1 2 3 31 31 H 1.08996 * 109.47730 * 59.99759 * 1 2 3 32 32 H 1.09000 * 109.46807 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46919 * 240.00774 * 2 1 3 34 34 H 1.09003 * 109.46677 * 60.00626 * 3 2 1 35 35 H 1.08993 * 109.47112 * 180.02562 * 3 2 1 36 36 H 1.08996 * 109.47101 * 300.00626 * 3 2 1 37 37 H 1.08994 * 109.47353 * 59.99791 * 5 4 2 38 38 H 1.08998 * 109.46550 * 299.98987 * 5 4 2 39 39 H 1.09002 * 109.87786 * 59.49172 * 9 8 6 40 40 H 1.08997 * 110.01531 * 298.40139 * 9 8 6 41 41 H 1.09002 * 109.47001 * 173.54915 * 12 10 9 42 42 H 1.08992 * 109.47083 * 53.54606 * 12 10 9 43 43 H 1.00903 * 110.99970 * 303.95843 * 13 12 10 44 44 H 1.08999 * 109.46697 * 60.00741 * 14 13 12 45 45 H 1.08993 * 109.47253 * 300.00391 * 14 13 12 46 46 H 0.97004 * 119.99652 * 359.97438 * 17 15 14 47 47 H 0.97000 * 120.00371 * 0.28325 * 21 20 18 48 48 H 1.08998 * 109.46842 * 59.99987 * 28 26 10 49 49 H 1.09002 * 109.46908 * 180.02562 * 28 26 10 50 50 H 1.08998 * 109.46552 * 300.00190 * 28 26 10 51 51 H 1.08998 * 110.36629 * 322.99596 * 29 8 6 52 52 H 1.08997 * 110.36491 * 85.21098 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2661 -1.3245 0.9884 6 6 3.6699 -1.9979 2.2747 7 8 2.9498 -1.9279 3.2479 8 7 4.8311 -2.6789 2.3430 9 6 5.3451 -3.3793 3.5292 10 6 6.6846 -4.0336 3.1302 11 1 7.5238 -3.3996 3.4164 12 6 6.8178 -5.4216 3.7600 13 7 6.9205 -5.2893 5.2194 14 6 7.0496 -6.6051 5.8596 15 6 7.1515 -6.4295 7.3528 16 8 7.1203 -5.3174 7.8362 17 7 7.2785 -7.5079 8.1511 18 6 7.3707 -7.3482 9.5097 19 1 7.3421 -6.3581 9.9401 20 6 7.5010 -8.4600 10.3327 21 7 7.5303 -9.6651 9.8093 22 14 7.6275 -8.2424 12.1837 23 1 7.7511 -9.5730 12.8313 24 1 8.8231 -7.4223 12.5051 25 1 6.4087 -7.5587 12.6860 26 6 6.5733 -4.1397 1.5863 27 1 6.0075 -5.0248 1.2952 28 6 7.9579 -4.1382 0.9352 29 6 5.7960 -2.8448 1.2409 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.6767 1.9563 0.8901 35 1 3.1299 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 4.0200 -0.5873 0.7123 38 1 3.1809 -2.0706 0.1984 39 1 4.6367 -4.1462 3.8426 40 1 5.5062 -2.6698 4.3408 41 1 7.7130 -5.9105 3.3756 42 1 5.9415 -6.0196 3.5102 43 1 7.6879 -4.6857 5.4747 44 1 7.9462 -7.1026 5.4899 45 1 6.1746 -7.2110 5.6243 46 1 7.3038 -8.3972 7.7645 47 1 7.4650 -9.7782 8.8482 48 1 8.5334 -4.9875 1.3033 49 1 7.8506 -4.2131 -0.1469 50 1 8.4759 -3.2124 1.1855 51 1 5.2720 -2.9586 0.2919 52 1 6.4743 -1.9927 1.1991 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105901272.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:24:52 Heat of formation + Delta-G solvation = -150.733131 kcal Electronic energy + Delta-G solvation = -29486.659708 eV Core-core repulsion = 25291.735259 eV Total energy + Delta-G solvation = -4194.924449 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.35339 -40.34826 -39.62385 -38.65686 -36.85895 -36.11261 -34.05124 -33.68176 -33.14968 -31.68051 -29.56235 -28.18812 -27.86726 -27.21538 -26.24203 -24.90694 -22.58493 -22.28099 -21.68569 -21.04739 -20.55068 -19.98391 -18.38871 -18.13802 -17.88157 -17.47225 -16.99056 -16.78350 -16.67109 -16.19156 -15.67380 -15.61970 -15.53023 -15.30929 -14.95151 -14.83709 -14.48907 -14.22555 -14.06085 -13.79349 -13.69307 -13.49361 -13.38599 -13.24633 -13.16750 -13.07341 -12.92094 -12.85831 -12.71968 -12.44839 -12.38001 -11.92745 -11.90709 -11.87604 -11.67671 -11.66610 -11.54037 -11.49405 -10.92557 -10.67569 -10.42954 -10.12406 -9.76696 -9.36416 -8.94323 -6.08181 1.47496 1.51307 1.53456 1.62370 1.81732 1.99490 2.39148 2.77030 2.85730 3.15209 3.28364 3.45372 3.51901 3.69289 3.84406 3.98693 4.06770 4.09636 4.11157 4.18892 4.24042 4.28048 4.31587 4.36558 4.42083 4.47171 4.50616 4.62126 4.66410 4.71647 4.73504 4.79616 4.89488 4.89654 4.91404 4.92403 5.07688 5.13891 5.19931 5.27873 5.31604 5.34080 5.50929 5.57481 5.91795 5.97906 6.15149 6.34375 6.44736 6.56872 6.73292 7.06050 7.42783 7.91589 8.53514 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016261 B = 0.001756 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.508885 B =15945.344504 C =17191.489426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.072 3.928 3 C -0.174 4.174 4 O -0.399 6.399 5 C 0.057 3.943 6 C 0.513 3.487 7 O -0.585 6.585 8 N -0.618 5.618 9 C 0.123 3.877 10 C -0.082 4.082 11 H 0.091 0.909 12 C 0.073 3.927 13 N -0.689 5.689 14 C 0.068 3.932 15 C 0.439 3.561 16 O -0.619 6.619 17 N -0.586 5.586 18 C -0.413 4.413 19 H 0.071 0.929 20 C -0.041 4.041 21 N -0.915 5.915 22 Si 1.133 2.867 23 H -0.271 1.271 24 H -0.271 1.271 25 H -0.276 1.276 26 C -0.089 4.089 27 H 0.094 0.906 28 C -0.137 4.137 29 C 0.096 3.904 30 H 0.047 0.953 31 H 0.096 0.904 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.047 0.953 40 H 0.040 0.960 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.345 0.655 44 H 0.073 0.927 45 H 0.101 0.899 46 H 0.385 0.615 47 H 0.259 0.741 48 H 0.061 0.939 49 H 0.078 0.922 50 H 0.062 0.938 51 H 0.108 0.892 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.594 14.031 -32.402 35.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.015 3.985 3 C -0.232 4.232 4 O -0.318 6.318 5 C -0.022 4.022 6 C 0.303 3.697 7 O -0.464 6.464 8 N -0.353 5.353 9 C 0.000 4.000 10 C -0.102 4.102 11 H 0.110 0.890 12 C -0.056 4.056 13 N -0.322 5.322 14 C -0.065 4.065 15 C 0.227 3.773 16 O -0.505 6.505 17 N -0.226 5.226 18 C -0.542 4.542 19 H 0.089 0.911 20 C -0.239 4.239 21 N -0.554 5.554 22 Si 0.953 3.047 23 H -0.195 1.195 24 H -0.197 1.197 25 H -0.202 1.202 26 C -0.108 4.108 27 H 0.112 0.888 28 C -0.194 4.194 29 C -0.025 4.025 30 H 0.067 0.933 31 H 0.114 0.886 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.124 0.876 38 H 0.129 0.871 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.164 0.836 44 H 0.091 0.909 45 H 0.119 0.881 46 H 0.219 0.781 47 H 0.070 0.930 48 H 0.080 0.920 49 H 0.097 0.903 50 H 0.081 0.919 51 H 0.126 0.874 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.707 14.069 -29.877 33.231 hybrid contribution 0.609 0.133 -1.261 1.406 sum -3.098 14.203 -31.138 34.364 Atomic orbital electron populations 1.21906 0.93302 1.02616 1.03042 1.22438 0.95509 0.92998 0.87518 1.22311 1.01820 0.96094 1.02956 1.88056 1.35633 1.70414 1.37722 1.22297 0.88255 0.98071 0.93576 1.20842 0.79742 0.78522 0.90615 1.90736 1.53242 1.62034 1.40402 1.48591 1.20000 1.51812 1.14848 1.21772 0.95674 0.95105 0.87409 1.22253 0.95602 0.96013 0.96292 0.89024 1.22034 1.01822 0.96310 0.85385 1.60036 1.51992 1.11433 1.08760 1.21510 1.02877 0.92801 0.89277 1.20968 0.81816 0.84324 0.90178 1.90506 1.56261 1.26221 1.77516 1.41989 1.65910 1.07933 1.06740 1.20526 1.53348 0.96862 0.83459 0.91077 1.27815 0.94208 0.90557 1.11363 1.70970 1.47981 1.22704 1.13786 0.82636 0.77804 0.76437 0.67817 1.19519 1.19678 1.20170 1.22391 0.98390 0.97935 0.92089 0.88783 1.21700 0.93609 1.02739 1.01391 1.22830 0.91057 0.98703 0.89903 0.93335 0.88563 0.92561 0.89339 0.93467 0.91943 0.89321 0.87557 0.87062 0.93468 0.94121 0.92299 0.90716 0.83584 0.90902 0.88073 0.78061 0.92967 0.92031 0.90296 0.91879 0.87394 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.56 71.98 0.69 -1.20 16 2 C 0.07 0.92 3.34 30.60 0.10 1.03 16 3 C -0.17 -1.85 9.53 71.98 0.69 -1.16 16 4 O -0.40 -8.77 9.52 -129.94 -1.24 -10.01 16 5 C 0.06 0.91 5.23 71.24 0.37 1.28 16 6 C 0.51 13.49 7.93 87.66 0.69 14.18 16 7 O -0.58 -23.06 16.83 16.02 0.27 -22.79 16 8 N -0.62 -12.94 3.33 -811.75 -2.70 -15.64 16 9 C 0.12 3.19 6.28 86.73 0.54 3.74 16 10 C -0.08 -1.44 2.60 -9.61 -0.03 -1.47 16 11 H 0.09 1.57 8.04 -2.38 -0.02 1.55 16 12 C 0.07 1.49 5.00 86.31 0.43 1.92 16 13 N -0.69 -21.20 5.93 -517.94 -3.07 -24.27 16 14 C 0.07 2.28 6.17 85.56 0.53 2.81 16 15 C 0.44 21.32 7.82 87.66 0.69 22.01 16 16 O -0.62 -35.61 15.78 -3.08 -0.05 -35.66 16 17 N -0.59 -30.42 5.28 -306.98 -1.62 -32.05 16 18 C -0.41 -24.20 9.68 84.04 0.81 -23.38 16 19 H 0.07 4.49 7.16 -2.91 -0.02 4.47 16 20 C -0.04 -2.28 5.50 84.92 0.47 -1.81 16 21 N -0.92 -51.68 13.68 21.66 0.30 -51.39 16 22 Si 1.13 49.63 29.92 68.60 2.05 51.68 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 25 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 26 C -0.09 -0.88 3.09 -9.40 -0.03 -0.90 16 27 H 0.09 0.89 8.05 -2.38 -0.02 0.87 16 28 C -0.14 -0.81 9.31 71.98 0.67 -0.14 16 29 C 0.10 0.92 6.16 86.86 0.53 1.46 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.09 0.63 7.79 -2.39 -0.02 0.61 16 34 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.58 7.87 -2.39 -0.02 0.56 16 36 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.11 1.03 7.87 -2.39 -0.02 1.01 16 38 H 0.11 0.97 7.79 -2.39 -0.02 0.95 16 39 H 0.05 1.48 7.77 -2.39 -0.02 1.46 16 40 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.07 1.53 8.06 -2.39 -0.02 1.51 16 43 H 0.35 11.08 8.43 -89.69 -0.76 10.33 16 44 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 46 H 0.39 18.19 6.73 -92.71 -0.62 17.56 16 47 H 0.26 14.13 6.78 -92.71 -0.63 13.50 16 48 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 49 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 50 H 0.06 0.37 8.07 -2.39 -0.02 0.35 16 51 H 0.11 0.40 7.47 -2.39 -0.02 0.38 16 52 H 0.09 0.62 7.99 -2.39 -0.02 0.60 16 Total: -1.00 -87.80 424.23 0.77 -87.02 By element: Atomic # 1 Polarization: 35.08 SS G_CDS: -0.33 Total: 34.75 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: 7.17 Total: 18.35 kcal Atomic # 7 Polarization: -116.24 SS G_CDS: -7.10 Total: -123.34 kcal Atomic # 8 Polarization: -67.44 SS G_CDS: -1.02 Total: -68.45 kcal Atomic # 14 Polarization: 49.63 SS G_CDS: 2.05 Total: 51.68 kcal Total: -87.80 0.77 -87.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105901272.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.711 kcal (2) G-P(sol) polarization free energy of solvation -87.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds