Wall clock time and date at job start Wed Apr 1 2020 00:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47322 * 2 1 4 4 O 1.42896 * 109.47138 * 180.02562 * 3 2 1 5 5 C 1.42901 * 113.99813 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.46651 * 179.97438 * 5 4 3 7 7 O 1.21275 * 120.00263 * 0.02562 * 6 5 4 8 8 N 1.34784 * 119.99481 * 179.97438 * 6 5 4 9 9 C 1.47027 * 125.64406 * 179.97438 * 8 6 5 10 10 C 1.54321 * 107.26617 * 178.90815 * 9 8 6 11 11 H 1.09005 * 110.72064 * 96.35188 * 10 9 8 12 12 C 1.53006 * 110.71843 * 219.44610 * 10 9 8 13 13 N 1.46901 * 109.47014 * 293.54624 * 12 10 9 14 14 C 1.46902 * 110.99983 * 179.97438 * 13 12 10 15 15 C 1.50696 * 109.46978 * 180.02562 * 14 13 12 16 16 O 1.21295 * 120.00238 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00076 * 180.02562 * 15 14 13 18 18 C 1.37105 * 120.00244 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99708 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00017 * 179.97438 * 18 17 15 21 21 N 1.31413 * 119.99901 * 359.71836 * 20 18 17 22 22 Si 1.86800 * 120.00194 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72210 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72333 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72143 * 22 20 18 26 26 C 1.55151 * 102.94663 * 337.80988 * 10 9 8 27 27 H 1.09005 * 111.00606 * 277.42945 * 26 10 9 28 28 C 1.53003 * 111.00683 * 153.57675 * 26 10 9 29 29 C 1.47421 * 125.64984 * 359.96412 * 8 6 5 30 30 H 1.08993 * 109.47265 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46964 * 300.00407 * 1 2 3 32 32 H 1.08999 * 109.46544 * 59.99700 * 1 2 3 33 33 H 1.09003 * 109.47169 * 239.99941 * 2 1 3 34 34 H 1.08994 * 109.47090 * 119.99831 * 2 1 3 35 35 H 1.09003 * 109.47047 * 59.99866 * 3 2 1 36 36 H 1.09003 * 109.46851 * 300.00255 * 3 2 1 37 37 H 1.08994 * 109.47353 * 59.99791 * 5 4 3 38 38 H 1.08998 * 109.46550 * 299.98987 * 5 4 3 39 39 H 1.09002 * 109.87786 * 59.49172 * 9 8 6 40 40 H 1.08997 * 110.01531 * 298.40139 * 9 8 6 41 41 H 1.09002 * 109.47001 * 173.54915 * 12 10 9 42 42 H 1.08992 * 109.47083 * 53.54606 * 12 10 9 43 43 H 1.00903 * 110.99970 * 303.95843 * 13 12 10 44 44 H 1.08999 * 109.46697 * 60.00741 * 14 13 12 45 45 H 1.08993 * 109.47253 * 300.00391 * 14 13 12 46 46 H 0.97004 * 119.99652 * 359.97438 * 17 15 14 47 47 H 0.97000 * 120.00371 * 0.28325 * 21 20 18 48 48 H 1.08998 * 109.46842 * 59.99987 * 28 26 10 49 49 H 1.09002 * 109.46908 * 180.02562 * 28 26 10 50 50 H 1.08998 * 109.46552 * 300.00190 * 28 26 10 51 51 H 1.08998 * 110.36629 * 322.99596 * 29 8 6 52 52 H 1.08997 * 110.36491 * 85.21098 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4425 -0.0006 5 6 4.0503 2.7479 -0.0001 6 6 5.5526 2.6288 -0.0001 7 8 6.0741 1.5339 -0.0011 8 7 6.3166 3.7392 -0.0002 9 6 7.7866 3.7678 0.0003 10 6 8.2159 5.2499 -0.0281 11 1 8.4308 5.6085 0.9786 12 6 9.4286 5.4448 -0.9405 13 7 10.5922 4.7603 -0.3612 14 6 11.7779 4.9258 -1.2125 15 6 12.9484 4.2113 -0.5877 16 8 12.8088 3.6226 0.4636 17 7 14.1508 4.2273 -1.1965 18 6 15.2156 3.5768 -0.6284 19 1 15.0910 3.0520 0.3073 20 6 16.4550 3.5928 -1.2563 21 7 16.6051 4.2268 -2.3976 22 14 17.9060 2.7072 -0.4819 23 1 19.1030 2.8688 -1.3459 24 1 18.1809 3.2854 0.8581 25 1 17.5875 1.2636 -0.3423 26 6 6.9681 5.9620 -0.6139 27 1 6.9587 5.9015 -1.7023 28 6 6.8976 7.4174 -0.1472 29 6 5.8167 5.1261 -0.0010 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.7291 3.2883 0.8903 38 1 3.7284 3.2892 -0.8897 39 1 8.1676 3.2545 -0.8826 40 1 8.1688 3.2883 0.9014 41 1 9.6437 6.5090 -1.0365 42 1 9.2140 5.0273 -1.9241 43 1 10.7722 5.0845 0.5772 44 1 12.0095 5.9863 -1.3107 45 1 11.5794 4.5044 -2.1979 46 1 14.2625 4.6984 -2.0371 47 1 15.8518 4.6870 -2.7996 48 1 7.7903 7.9485 -0.4774 49 1 6.0135 7.8928 -0.5720 50 1 6.8386 7.4475 0.9408 51 1 4.9207 5.2060 -0.6164 52 1 5.6074 5.4544 1.0171 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105907354.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:48 Heat of formation + Delta-G solvation = -125.472036 kcal Electronic energy + Delta-G solvation = -29196.051459 eV Core-core repulsion = 25002.222414 eV Total energy + Delta-G solvation = -4193.829045 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.47991 -38.86003 -38.33884 -37.62571 -35.50164 -34.18837 -34.08055 -33.14265 -31.16993 -30.76184 -28.94588 -26.94347 -26.74910 -25.89584 -24.60457 -23.49252 -22.02848 -21.73249 -20.57838 -19.65284 -19.55811 -17.88678 -17.57702 -17.08326 -16.81817 -16.59663 -16.09834 -15.63042 -15.56350 -15.07727 -14.92192 -14.47931 -14.26133 -14.12380 -13.97416 -13.84117 -13.62820 -13.33097 -13.17811 -12.98177 -12.70826 -12.66668 -12.49738 -12.41734 -12.23131 -12.06424 -11.79132 -11.66782 -11.36507 -11.31239 -11.19909 -11.11975 -10.94439 -10.91542 -10.83898 -10.18502 -10.10623 -9.92960 -9.84386 -9.52379 -8.84774 -8.51163 -8.13162 -8.00807 -6.73341 -3.86336 2.39229 2.41703 3.33286 3.37155 3.45343 3.57392 3.85602 3.90767 4.09066 4.16278 4.32116 4.45378 4.50221 4.57912 4.61983 4.68931 4.76820 4.86465 4.92046 4.96772 4.99345 4.99497 5.02301 5.03546 5.12291 5.20387 5.26772 5.27418 5.30253 5.46949 5.53590 5.56236 5.62246 5.67692 5.69230 5.73400 5.78411 5.83008 5.86353 5.97196 6.01523 6.04888 6.12970 6.67816 7.08671 7.26281 7.56509 7.83093 7.98717 8.10384 8.62261 8.82192 9.49774 9.90054 10.70167 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015633 B = 0.001687 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.627627 B =16597.448615 C =18024.699579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.060 3.940 4 O -0.364 6.364 5 C 0.051 3.949 6 C 0.525 3.475 7 O -0.513 6.513 8 N -0.622 5.622 9 C 0.124 3.876 10 C -0.091 4.091 11 H 0.087 0.913 12 C 0.070 3.930 13 N -0.668 5.668 14 C 0.052 3.948 15 C 0.443 3.557 16 O -0.575 6.575 17 N -0.576 5.576 18 C -0.382 4.382 19 H 0.099 0.901 20 C -0.009 4.009 21 N -0.902 5.902 22 Si 1.091 2.909 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.100 4.100 27 H 0.089 0.911 28 C -0.141 4.141 29 C 0.101 3.899 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.033 0.967 42 H 0.074 0.926 43 H 0.350 0.650 44 H 0.043 0.957 45 H 0.085 0.915 46 H 0.375 0.625 47 H 0.261 0.739 48 H 0.063 0.937 49 H 0.059 0.941 50 H 0.059 0.941 51 H 0.074 0.926 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.745 6.768 1.661 32.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.016 4.016 4 O -0.282 6.282 5 C -0.029 4.029 6 C 0.312 3.688 7 O -0.386 6.386 8 N -0.359 5.359 9 C 0.002 3.998 10 C -0.110 4.110 11 H 0.106 0.894 12 C -0.060 4.060 13 N -0.301 5.301 14 C -0.081 4.081 15 C 0.228 3.772 16 O -0.459 6.459 17 N -0.214 5.214 18 C -0.511 4.511 19 H 0.117 0.883 20 C -0.212 4.212 21 N -0.541 5.541 22 Si 0.917 3.083 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.120 4.120 27 H 0.107 0.893 28 C -0.199 4.199 29 C -0.022 4.022 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.051 0.949 42 H 0.092 0.908 43 H 0.169 0.831 44 H 0.060 0.940 45 H 0.103 0.897 46 H 0.208 0.792 47 H 0.072 0.928 48 H 0.082 0.918 49 H 0.078 0.922 50 H 0.078 0.922 51 H 0.093 0.907 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -30.020 4.505 1.922 30.417 hybrid contribution -1.576 1.987 -0.207 2.545 sum -31.596 6.493 1.716 32.302 Atomic orbital electron populations 1.21695 0.94624 1.02388 1.01936 1.21459 0.95604 0.95343 1.03830 1.22642 0.80415 0.98414 1.00179 1.88022 1.19607 1.25202 1.95401 1.22140 0.91547 0.86875 1.02290 1.19855 0.88206 0.83395 0.77306 1.90779 1.74375 1.25717 1.47773 1.48477 1.07848 1.05444 1.74099 1.21927 0.77705 0.96458 1.03694 1.22303 0.94052 0.94380 1.00304 0.89430 1.21956 0.89870 0.96253 0.97939 1.60046 1.03203 1.60979 1.05870 1.21655 0.90522 0.98317 0.97602 1.19735 0.83675 0.86342 0.87399 1.90536 1.83729 1.47573 1.24023 1.41935 1.08774 1.48247 1.22467 1.20542 0.89311 1.32075 1.09211 0.88329 1.26502 1.00255 0.98456 0.95941 1.70903 1.33863 1.32216 1.17111 0.83134 0.74322 0.75704 0.75117 1.20426 1.21042 1.20974 1.22395 0.93771 0.94886 1.00917 0.89309 1.21718 1.02338 0.94318 1.01538 1.22463 0.97446 0.81233 1.01051 0.91884 0.92541 0.92536 0.90879 0.90879 0.93169 0.93185 0.90435 0.90456 0.90485 0.90704 0.94863 0.90799 0.83061 0.93953 0.89666 0.79175 0.92808 0.91806 0.92242 0.92181 0.90718 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.91 37.16 0.37 -0.34 16 2 C -0.12 -0.87 6.30 -26.73 -0.17 -1.04 16 3 C 0.06 0.44 5.94 37.16 0.22 0.66 16 4 O -0.36 -4.15 9.88 -55.14 -0.54 -4.69 16 5 C 0.05 0.46 5.42 36.01 0.20 0.66 16 6 C 0.53 6.83 7.93 -10.98 -0.09 6.74 16 7 O -0.51 -9.41 16.83 -14.35 -0.24 -9.66 16 8 N -0.62 -6.69 3.33 -170.51 -0.57 -7.26 16 9 C 0.12 1.53 6.28 -3.06 -0.02 1.51 16 10 C -0.09 -0.86 2.60 -88.79 -0.23 -1.09 16 11 H 0.09 0.81 8.04 -51.93 -0.42 0.39 16 12 C 0.07 0.77 5.00 -3.82 -0.02 0.75 16 13 N -0.67 -10.37 5.93 -115.06 -0.68 -11.05 16 14 C 0.05 0.90 6.17 -4.98 -0.03 0.86 16 15 C 0.44 10.56 7.82 -10.99 -0.09 10.48 16 16 O -0.58 -15.96 15.78 5.54 0.09 -15.87 16 17 N -0.58 -14.67 5.28 -10.96 -0.06 -14.72 16 18 C -0.38 -10.92 9.68 -14.93 -0.14 -11.06 16 19 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 20 C -0.01 -0.25 5.50 -17.47 -0.10 -0.35 16 21 N -0.90 -25.49 13.68 55.50 0.76 -24.73 16 22 Si 1.09 24.63 29.92 -169.99 -5.09 19.55 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 C -0.10 -0.66 3.09 -88.46 -0.27 -0.93 16 27 H 0.09 0.59 8.05 -51.93 -0.42 0.17 16 28 C -0.14 -0.72 9.31 37.16 0.35 -0.37 16 29 C 0.10 0.66 6.16 -2.52 -0.02 0.64 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.49 7.84 -51.93 -0.41 0.08 16 39 H 0.08 1.12 7.77 -51.93 -0.40 0.71 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 43 H 0.35 5.58 8.43 -39.29 -0.33 5.25 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.38 8.79 6.73 -40.82 -0.27 8.51 16 47 H 0.26 7.07 6.78 -40.82 -0.28 6.80 16 48 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 50 H 0.06 0.30 8.07 -51.93 -0.42 -0.12 16 51 H 0.07 0.33 7.47 -51.93 -0.39 -0.06 16 52 H 0.07 0.40 7.99 -51.93 -0.41 -0.02 16 LS Contribution 425.45 15.07 6.41 6.41 Total: -1.00 -37.31 425.45 -9.22 -46.53 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -9.26 Total: 8.35 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -0.04 Total: 7.13 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: -0.55 Total: -57.76 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.70 Total: -30.21 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -5.09 Total: 19.55 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -37.31 -9.22 -46.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105907354.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.937 kcal (2) G-P(sol) polarization free energy of solvation -37.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds