Wall clock time and date at job start Wed Apr 1 2020 00:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47322 * 2 1 4 4 O 1.42896 * 109.47138 * 180.02562 * 3 2 1 5 5 C 1.42901 * 113.99813 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.46651 * 179.97438 * 5 4 3 7 7 O 1.21275 * 120.00263 * 0.02562 * 6 5 4 8 8 N 1.34784 * 119.99481 * 179.97438 * 6 5 4 9 9 C 1.47027 * 125.64406 * 179.97438 * 8 6 5 10 10 C 1.54321 * 107.26617 * 178.90815 * 9 8 6 11 11 H 1.09005 * 110.72064 * 96.35188 * 10 9 8 12 12 C 1.53006 * 110.71843 * 219.44610 * 10 9 8 13 13 N 1.46901 * 109.47014 * 293.54624 * 12 10 9 14 14 C 1.46902 * 110.99983 * 179.97438 * 13 12 10 15 15 C 1.50696 * 109.46978 * 180.02562 * 14 13 12 16 16 O 1.21295 * 120.00238 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00076 * 180.02562 * 15 14 13 18 18 C 1.37105 * 120.00244 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99708 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00017 * 179.97438 * 18 17 15 21 21 N 1.31413 * 119.99901 * 359.71836 * 20 18 17 22 22 Si 1.86800 * 120.00194 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72210 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72333 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72143 * 22 20 18 26 26 C 1.55151 * 102.94663 * 337.80988 * 10 9 8 27 27 H 1.09005 * 111.00606 * 277.42945 * 26 10 9 28 28 C 1.53003 * 111.00683 * 153.57675 * 26 10 9 29 29 C 1.47421 * 125.64984 * 359.96412 * 8 6 5 30 30 H 1.08993 * 109.47265 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46964 * 300.00407 * 1 2 3 32 32 H 1.08999 * 109.46544 * 59.99700 * 1 2 3 33 33 H 1.09003 * 109.47169 * 239.99941 * 2 1 3 34 34 H 1.08994 * 109.47090 * 119.99831 * 2 1 3 35 35 H 1.09003 * 109.47047 * 59.99866 * 3 2 1 36 36 H 1.09003 * 109.46851 * 300.00255 * 3 2 1 37 37 H 1.08994 * 109.47353 * 59.99791 * 5 4 3 38 38 H 1.08998 * 109.46550 * 299.98987 * 5 4 3 39 39 H 1.09002 * 109.87786 * 59.49172 * 9 8 6 40 40 H 1.08997 * 110.01531 * 298.40139 * 9 8 6 41 41 H 1.09002 * 109.47001 * 173.54915 * 12 10 9 42 42 H 1.08992 * 109.47083 * 53.54606 * 12 10 9 43 43 H 1.00903 * 110.99970 * 303.95843 * 13 12 10 44 44 H 1.08999 * 109.46697 * 60.00741 * 14 13 12 45 45 H 1.08993 * 109.47253 * 300.00391 * 14 13 12 46 46 H 0.97004 * 119.99652 * 359.97438 * 17 15 14 47 47 H 0.97000 * 120.00371 * 0.28325 * 21 20 18 48 48 H 1.08998 * 109.46842 * 59.99987 * 28 26 10 49 49 H 1.09002 * 109.46908 * 180.02562 * 28 26 10 50 50 H 1.08998 * 109.46552 * 300.00190 * 28 26 10 51 51 H 1.08998 * 110.36629 * 322.99596 * 29 8 6 52 52 H 1.08997 * 110.36491 * 85.21098 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4425 -0.0006 5 6 4.0503 2.7479 -0.0001 6 6 5.5526 2.6288 -0.0001 7 8 6.0741 1.5339 -0.0011 8 7 6.3166 3.7392 -0.0002 9 6 7.7866 3.7678 0.0003 10 6 8.2159 5.2499 -0.0281 11 1 8.4308 5.6085 0.9786 12 6 9.4286 5.4448 -0.9405 13 7 10.5922 4.7603 -0.3612 14 6 11.7779 4.9258 -1.2125 15 6 12.9484 4.2113 -0.5877 16 8 12.8088 3.6226 0.4636 17 7 14.1508 4.2273 -1.1965 18 6 15.2156 3.5768 -0.6284 19 1 15.0910 3.0520 0.3073 20 6 16.4550 3.5928 -1.2563 21 7 16.6051 4.2268 -2.3976 22 14 17.9060 2.7072 -0.4819 23 1 19.1030 2.8688 -1.3459 24 1 18.1809 3.2854 0.8581 25 1 17.5875 1.2636 -0.3423 26 6 6.9681 5.9620 -0.6139 27 1 6.9587 5.9015 -1.7023 28 6 6.8976 7.4174 -0.1472 29 6 5.8167 5.1261 -0.0010 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.7291 3.2883 0.8903 38 1 3.7284 3.2892 -0.8897 39 1 8.1676 3.2545 -0.8826 40 1 8.1688 3.2883 0.9014 41 1 9.6437 6.5090 -1.0365 42 1 9.2140 5.0273 -1.9241 43 1 10.7722 5.0845 0.5772 44 1 12.0095 5.9863 -1.3107 45 1 11.5794 4.5044 -2.1979 46 1 14.2625 4.6984 -2.0371 47 1 15.8518 4.6870 -2.7996 48 1 7.7903 7.9485 -0.4774 49 1 6.0135 7.8928 -0.5720 50 1 6.8386 7.4475 0.9408 51 1 4.9207 5.2060 -0.6164 52 1 5.6074 5.4544 1.0171 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105907354.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:47 Heat of formation + Delta-G solvation = -153.290108 kcal Electronic energy + Delta-G solvation = -29197.257741 eV Core-core repulsion = 25002.222414 eV Total energy + Delta-G solvation = -4195.035328 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.34761 -40.34390 -39.52235 -38.50552 -36.85831 -36.11186 -34.61695 -33.98733 -33.14822 -31.72314 -29.82685 -28.15175 -27.28778 -26.73989 -26.03761 -24.86249 -22.65757 -22.42123 -21.68510 -21.04517 -20.49179 -19.98182 -18.44970 -18.15594 -17.80804 -17.51412 -16.96838 -16.94533 -16.72318 -16.44345 -15.85038 -15.66819 -15.52008 -15.31217 -15.07713 -14.87302 -14.69189 -14.35975 -14.11825 -13.88754 -13.69300 -13.38778 -13.30188 -13.22900 -13.07591 -12.95323 -12.90643 -12.89276 -12.71658 -12.44588 -11.92647 -11.90580 -11.89447 -11.83885 -11.81511 -11.67531 -11.53886 -11.49334 -10.94042 -10.71313 -10.42809 -10.12231 -9.77063 -9.36387 -8.94177 -6.08031 1.46824 1.51410 1.53577 1.61228 1.81814 1.99601 2.39256 2.76938 2.83497 3.15420 3.28239 3.45199 3.51840 3.69575 3.84949 4.01212 4.04719 4.11040 4.15155 4.19001 4.21449 4.31644 4.36518 4.39725 4.42137 4.47179 4.50676 4.54152 4.62404 4.63591 4.66494 4.72097 4.82667 4.89675 4.91426 5.07685 5.13294 5.15315 5.18948 5.21294 5.34090 5.34484 5.50979 5.57619 5.91897 5.98004 6.08309 6.34385 6.43716 6.57024 6.73449 7.05243 7.42933 7.91731 8.53696 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015633 B = 0.001687 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.627627 B =16597.448615 C =18024.699579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.056 3.944 4 O -0.407 6.407 5 C 0.058 3.942 6 C 0.513 3.487 7 O -0.585 6.585 8 N -0.618 5.618 9 C 0.123 3.877 10 C -0.082 4.082 11 H 0.092 0.908 12 C 0.073 3.927 13 N -0.689 5.689 14 C 0.068 3.932 15 C 0.439 3.561 16 O -0.619 6.619 17 N -0.586 5.586 18 C -0.413 4.413 19 H 0.071 0.929 20 C -0.040 4.040 21 N -0.915 5.915 22 Si 1.133 2.867 23 H -0.271 1.271 24 H -0.271 1.271 25 H -0.276 1.276 26 C -0.089 4.089 27 H 0.094 0.906 28 C -0.137 4.137 29 C 0.096 3.904 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.047 0.953 40 H 0.041 0.959 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.345 0.655 44 H 0.073 0.927 45 H 0.101 0.899 46 H 0.385 0.615 47 H 0.259 0.741 48 H 0.061 0.939 49 H 0.078 0.922 50 H 0.062 0.938 51 H 0.108 0.892 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.192 9.603 1.119 35.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C -0.019 4.019 4 O -0.326 6.326 5 C -0.021 4.021 6 C 0.302 3.698 7 O -0.465 6.465 8 N -0.352 5.352 9 C 0.000 4.000 10 C -0.102 4.102 11 H 0.110 0.890 12 C -0.056 4.056 13 N -0.322 5.322 14 C -0.065 4.065 15 C 0.227 3.773 16 O -0.505 6.505 17 N -0.225 5.225 18 C -0.542 4.542 19 H 0.089 0.911 20 C -0.239 4.239 21 N -0.555 5.555 22 Si 0.953 3.047 23 H -0.195 1.195 24 H -0.197 1.197 25 H -0.202 1.202 26 C -0.108 4.108 27 H 0.112 0.888 28 C -0.194 4.194 29 C -0.025 4.025 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.164 0.836 44 H 0.091 0.909 45 H 0.119 0.881 46 H 0.219 0.781 47 H 0.070 0.930 48 H 0.080 0.920 49 H 0.097 0.903 50 H 0.081 0.919 51 H 0.126 0.874 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -32.520 7.425 1.352 33.385 hybrid contribution -0.891 1.116 -0.025 1.428 sum -33.412 8.541 1.327 34.511 Atomic orbital electron populations 1.21658 0.92663 1.02853 1.02858 1.21506 0.97271 0.95453 1.02416 1.22841 0.78520 0.98604 1.01960 1.87984 1.21879 1.26950 1.95800 1.22263 0.87974 0.86609 1.05285 1.20837 0.90267 0.82750 0.75901 1.90736 1.75936 1.28499 1.51293 1.48586 1.07021 1.07084 1.72527 1.21775 0.79307 0.98277 1.00610 1.22254 0.94852 0.92411 1.00646 0.89005 1.22034 0.88439 0.97162 0.97921 1.60036 1.03710 1.62787 1.05684 1.21510 0.88372 0.99004 0.97582 1.20970 0.84634 0.85119 0.86587 1.90506 1.84630 1.49254 1.26114 1.41986 1.08931 1.48615 1.23011 1.20528 0.91067 1.33533 1.09083 0.91081 1.27804 1.02222 0.98191 0.95655 1.70970 1.34050 1.32845 1.17595 0.82641 0.71823 0.75175 0.75090 1.19520 1.19674 1.20167 1.22391 0.91614 0.95716 1.01096 0.88797 1.21700 1.03185 0.92697 1.01857 1.22836 0.98460 0.78207 1.03000 0.91733 0.91586 0.91555 0.92336 0.92371 0.91296 0.91238 0.87218 0.87029 0.93466 0.94084 0.92304 0.90722 0.83583 0.90903 0.88074 0.78065 0.92965 0.92040 0.90302 0.91863 0.87367 0.89105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.91 71.98 0.71 -0.43 16 2 C -0.13 -1.76 6.30 30.60 0.19 -1.57 16 3 C 0.06 0.73 5.94 71.98 0.43 1.16 16 4 O -0.41 -9.05 9.88 -129.94 -1.28 -10.33 16 5 C 0.06 0.91 5.42 71.24 0.39 1.30 16 6 C 0.51 13.46 7.93 87.66 0.69 14.15 16 7 O -0.59 -23.07 16.83 16.02 0.27 -22.80 16 8 N -0.62 -12.88 3.33 -811.75 -2.70 -15.58 16 9 C 0.12 3.18 6.28 86.73 0.54 3.72 16 10 C -0.08 -1.44 2.60 -9.61 -0.03 -1.46 16 11 H 0.09 1.56 8.04 -2.38 -0.02 1.54 16 12 C 0.07 1.49 5.00 86.31 0.43 1.92 16 13 N -0.69 -21.18 5.93 -517.94 -3.07 -24.25 16 14 C 0.07 2.28 6.17 85.56 0.53 2.80 16 15 C 0.44 21.30 7.82 87.66 0.69 21.99 16 16 O -0.62 -35.58 15.78 -3.08 -0.05 -35.63 16 17 N -0.59 -30.38 5.28 -306.98 -1.62 -32.00 16 18 C -0.41 -24.19 9.68 84.04 0.81 -23.38 16 19 H 0.07 4.49 7.16 -2.91 -0.02 4.47 16 20 C -0.04 -2.23 5.50 84.92 0.47 -1.77 16 21 N -0.92 -51.67 13.68 21.66 0.30 -51.37 16 22 Si 1.13 49.58 29.92 68.60 2.05 51.64 16 23 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 25 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 26 C -0.09 -0.87 3.09 -9.40 -0.03 -0.90 16 27 H 0.09 0.89 8.05 -2.38 -0.02 0.87 16 28 C -0.14 -0.80 9.31 71.98 0.67 -0.13 16 29 C 0.10 0.91 6.16 86.86 0.53 1.45 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 35 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.11 1.00 8.14 -2.39 -0.02 0.99 16 38 H 0.11 0.97 7.84 -2.39 -0.02 0.95 16 39 H 0.05 1.48 7.77 -2.39 -0.02 1.46 16 40 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.07 1.53 8.06 -2.39 -0.02 1.51 16 43 H 0.35 11.07 8.43 -89.69 -0.76 10.31 16 44 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 46 H 0.39 18.17 6.73 -92.71 -0.62 17.55 16 47 H 0.26 14.12 6.78 -92.71 -0.63 13.49 16 48 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 49 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 50 H 0.06 0.36 8.07 -2.39 -0.02 0.34 16 51 H 0.11 0.39 7.47 -2.39 -0.02 0.37 16 52 H 0.09 0.61 7.99 -2.39 -0.02 0.59 16 Total: -1.00 -87.63 425.45 0.60 -87.04 By element: Atomic # 1 Polarization: 34.79 SS G_CDS: -0.33 Total: 34.46 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: 7.04 Total: 18.84 kcal Atomic # 7 Polarization: -116.11 SS G_CDS: -7.10 Total: -123.21 kcal Atomic # 8 Polarization: -67.70 SS G_CDS: -1.06 Total: -68.76 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 2.05 Total: 51.64 kcal Total: -87.63 0.60 -87.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105907354.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.253 kcal (2) G-P(sol) polarization free energy of solvation -87.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds